| 2002 |
Dot1 (yeast ortholog of DOT1L) methylates lysine 79 of histone H3 within the globular domain of the nucleosome, not the tail. Mutations abolishing Dot1 catalytic activity impair telomeric silencing, and this correlates with weakened interaction of Sir2 and Sir3 with telomeric regions in vivo, establishing H3K79 methylation as the mechanism by which Dot1 mediates telomeric silencing. |
In vivo mutagenesis of H3-K79 and Dot1 catalytic residues; Sir protein ChIP; telomeric silencing reporter assays |
Genes & development |
High |
12080090
|
| 2000 |
Yeast Dot1 is required for meiotic pachytene checkpoint function: in dot1 mutants, synapsis-defective (zip1, dmc1) cells bypass the checkpoint and produce inviable meiotic products. Dot1 is also required for proper nucleolar concentration of checkpoint proteins Pch2 and Sir2, and for preventing sister-chromatid repair by the Rad54 pathway during meiosis. |
Genetic deletion of DOT1; meiotic progression assays; fluorescence microscopy of Pch2/Sir2 localization |
Molecular biology of the cell |
High |
11029058
|
| 2005 |
Dot1-dependent H3K79 methylation is required for DNA damage checkpoint activation in S. cerevisiae: loss of H3K79 methylation does not affect Mec1 activation but prevents phosphorylation of the checkpoint adaptor Rad9, thereby blocking Rad53 kinase activation and causing checkpoint deficiency. |
Genetic deletion/mutation of DOT1, H3-K79, H2B-K123; Rad53 kinase phosphorylation assays; cell cycle arrest assays after genotoxic stress |
The Journal of biological chemistry |
High |
15632126 16166626
|
| 2005 |
Dot1/H3K79 methylation mediates G1 and intra-S phase checkpoint activation after ionizing radiation by enabling Rad9 (yeast 53BP1 ortholog) binding to double-strand break sites via its Tudor domain; Tudor domain mutations in Rad9 that abrogate methylated K79 binding phenocopy dot1 deletion and block Rad53 phosphorylation. In human cells, DOT1L-mediated H3K79 methylation similarly mediates 53BP1 recruitment to DSBs via its paired Tudor domains. |
Genetic screen; Rad9 Tudor domain mutagenesis; Rad53 phosphorylation assays; ChIP for Rad9 at DSBs |
Molecular and cellular biology |
High |
16166626
|
| 2007 |
Dot1 requires the basic patch residues R17-H18-R19 of the histone H4 N-terminal tail for H3K79 methyltransferase activity in vitro and in vivo. Dot1 physically interacts with the H4 tail via its own C-terminal acidic patch. This defines a novel trans-histone pathway whereby H4 tail charge is required for modification of H3K79. |
In vitro methyltransferase assay with histone mutants; in vitro binding assay (H4 tail pulldown); in vivo mutagenesis of H4 basic patch and Dot1 acidic patch; telomere silencing assays |
Genes & development |
High |
17675446
|
| 2008 |
Dot1-dependent H3K79 methylation promotes Rad9 binding to chromatin at DSBs and uncapped telomeres, and Rad9/H3K79me together inhibit resection of DSBs by a Rad50-dependent nuclease, controlling ssDNA accumulation and thereby modulating Mec1 checkpoint kinase activation. |
Genetic deletion (dot1Δ, rad9Δ); ssDNA accumulation assays at DSBs and uncapped telomeres; Mec1 activation assays |
The EMBO journal |
High |
18418382
|
| 2008 |
DOT1L is the sole H3K79 di- and trimethyltransferase in mammalian cells; Dot1l mutant fibroblasts lack H3K79 di- and trimethylation at all loci. DOT1L occupancy is ubiquitously coupled with active transcription, preferentially at the proximal transcribed region of active genes, and H3K79 methylation levels dynamically respond to changes in gene activity. |
ChIP-chip tiling arrays; ChIP in Dot1l mutant fibroblasts; western blot for H3K79 methylation states |
Molecular and cellular biology |
High |
18285465
|
| 2009 |
H2B monoubiquitination at K123 is required for both H3K4 trimethylation by COMPASS and H3K79 trimethylation by Dot1; this dependency is intrinsic to H2BK123 monoubiquitination regardless of additional H2B sequence alterations or epitope tags. |
Systematic alanine-scanning mutagenesis of histone H2A/H2B; in vivo methylation assays |
The Journal of cell biology |
High |
19667127
|
| 2009 |
Dot1 and its H3K79 methylation promote sister chromatid recombination (SCR) repair of replication-dependent DSBs in yeast; Dot1 and Rad9 promote DSB-induced loading of cohesin onto chromatin, suggesting that Rad9 recruitment via gammaH2A and H3K79me at DSBs contributes to SCR by regulating cohesin binding. |
Genetic epistasis; SCR assays; cohesin ChIP at DSBs |
Genetics |
Medium |
19332880
|
| 2010 |
DOT1L forms a multisubunit complex (DotCom) with MLL fusion partners ENL, AF9/MLLT3, AF17/MLLT6, and AF10/MLLT10, as well as Wnt pathway components TRRAP, Skp1, and beta-catenin. DotCom trimethylates H3K79 and is required for Wnt/Wingless target gene expression in Drosophila; depletion of Bre1 (H2B ubiquitin E3 ligase) specifically reduces H3K79 trimethylation and Wingless target gene expression. |
Mass spectrometry of purified complex; H3K79 trimethylation in vitro assay; Drosophila RNAi knockdown; gene expression assays |
Genes & development |
High |
20203130
|
| 2011 |
Cardiac-specific knockout of Dot1L in mice results in dilated cardiomyopathy. Mechanistically, DOT1L regulates transcription of the Dystrophin (Dmd) gene; loss of DOT1L reduces H3K79 methylation at the Dmd locus, decreasing Dystrophin expression and destabilizing the Dystrophin-glycoprotein complex. Re-expression of miniDmd rescues the DCM phenotype, establishing Dmd as a primary downstream target. |
Conditional cardiac-specific Dot1L knockout mice; ChIP for H3K79me at Dmd locus; mini-Dmd rescue experiment; protein complex analysis |
Genes & development |
High |
21289070
|
| 2011 |
Conditional deletion of Dot1l in postnatal mouse hematopoiesis causes pancytopenia and failure of hematopoietic homeostasis; Dot1l-deficient cells fail to reconstitute recipient bone marrow. MLL-AF9 leukemic cells specifically require Dot1l for oncogenic transformation, whereas cells driven by Hoxa9/Meis1 or E2A-HLF do not. |
Conditional Dot1l knockout mouse model; competitive bone marrow transplantation; MLL-AF9, Hoxa9/Meis1, and E2A-HLF transformation assays |
Blood |
High |
21398221
|
| 2011 |
DOT1L deficiency in lung cancer cells causes multinucleated phenotype, abnormal mitotic spindle formation, and centrosome number abnormalities leading to chromosomal missegregation, G1 arrest, and senescence. Re-expression of catalytically active but not inactive DOT1L rescues these phenotypes, establishing the requirement for H3K79 methyltransferase activity. |
siRNA knockdown of DOT1L; catalytically active vs. inactive DOT1L re-expression; cell cycle analysis; mitotic spindle immunofluorescence; senescence-associated β-galactosidase assay |
The Journal of biological chemistry |
High |
22190683
|
| 2011 |
Dot1 displays histone chaperone activity independent of its methyltransferase activity: Dot1 can assemble core histones into nucleosomes and facilitate ATP-dependent chromatin-remodeling activity via its nucleosome-binding domain in vitro; this chaperone function regulates histone exchange and nucleosome dynamics at transcribed regions of long genes in vivo. |
In vitro nucleosome assembly assay; in vitro chromatin remodeling assay; global histone exchange analysis; genetic analysis of cryptic transcription |
Nature communications |
Medium |
29339748
|
| 2013 |
DOT1L interacts with MLL fusion partners AF9 and ENL through a specific 10-amino acid region (DOT1L865-874) containing four conserved hydrophobic residues; the entire intact C-terminal domain of AF9/ENL is required for optimal interaction. This interaction is essential for immortalization by MLL-AF9, as alanine mutations at the binding site abrogate transformation. |
Alanine scanning mutagenesis; biochemical/biophysical binding studies; functional immortalization assays |
The Journal of biological chemistry |
High |
23996074
|
| 2013 |
Dot1-dependent H3K79 methylation is required for Mek1 meiotic checkpoint kinase autophosphorylation (but not Mec1/Tel1-dependent phosphorylation) during meiosis; H3K79me promotes Hop1 activation and proper distribution along meiotic chromosomes at least partly by regulating Pch2 localization. HOP1 overexpression bypasses the Dot1 requirement for checkpoint activation. |
Genetic manipulation of Dot1 catalytic activity; H3-K79 mutagenesis; Mek1 kinase activity assays; meiotic chromosome spreads; HOP1 overexpression epistasis |
PLoS genetics |
High |
23382701
|
| 2018 |
Structural analysis by cryo-EM of DOT1L bound to a nucleosome containing site-specifically ubiquitylated H2BK120 reveals that DOT1L engages the nucleosome acidic patch using a variant arginine anchor and adopts a conformation poised for methylation; DOT1L and ubiquitin interact directly through complementary hydrophobic surfaces, explaining how H2BK120ub stimulates DOT1L activity. |
Cryo-EM structure determination; site-specific ubiquitylation of H2BK120 in reconstituted nucleosomes |
Cell reports |
High |
30759380
|
| 2018 |
Crystal structure of apo AF10OM-LZ and its complex with the coiled-coil domain of DOT1L reveals the molecular basis for DOT1L-AF10 interaction; zinc stabilizes the complex. Disruption of the DOT1L-AF10 interface abrogates MLL-AF10-associated leukemic transformation. |
X-ray crystallography; structure-guided mutagenesis; leukemic transformation assay |
Genes & development |
High |
29563185
|
| 2019 |
DOT1L functions as a cofactor of ERα in breast cancer cell chromatin, where the two proteins co-localize to regulate estrogen target gene transcription. DOT1L blockade reduces H3K79 methylation and ERα/FOXA1 gene expression, blocking proliferation of hormone-responsive and antiestrogen-resistant breast cancer cells. |
ChIP-seq co-localization; siRNA knockdown and pharmacological inhibition; gene expression analysis; in vivo xenograft |
Science advances |
Medium |
30775443
|
| 2020 |
DOT1L loss (KO), but not catalytic inactivation, causes defects in neural progenitor cell gene expression signature and glial cell specification in ESC differentiation, and exacerbates transcription elongation defects induced by a super elongation complex inhibitor; revealing a catalytic-independent role of DOT1L in transcription elongation and cell-fate determination. |
DOT1L knockout vs. catalytic-dead knock-in ESCs; neural differentiation assays; transcriptome analysis; super elongation complex inhibitor (KL-2) epistasis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
33077595
|
| 2020 |
DOT1L protein stability is regulated by O-GlcNAcylation at evolutionarily conserved S1511, mediated by OGT. O-GlcNAcylation at S1511 prevents binding of the E3 ubiquitin ligase UBE3C, which otherwise promotes DOT1L proteasomal degradation. HBP-enhanced O-GlcNAcylation increases H3K79 methylation and expression of HOXA9/MEIS1 target genes. |
Affinity purification-mass spectrometry; site-directed mutagenesis of S1511; co-immunoprecipitation of UBE3C-DOT1L; OGT inhibition/HBP pathway manipulation; ChIP for H3K79me |
Cell reports |
High |
34551297
|
| 2020 |
CBP mediates DOT1L acetylation at K358, stabilizing DOT1L by preventing RNF8 E3 ubiquitin ligase binding and subsequent proteasomal degradation without affecting enzymatic activity. Stabilized DOT1L then catalyzes H3K79 methylation at promoters of SNAIL and ZEB1, promoting EMT and cancer metastasis. |
Affinity purification-mass spectrometry; co-IP of RNF8-DOT1L; DOT1L K358 acetylation-mimic mutant; ChIP for H3K79me at EMT gene promoters; in vivo metastasis assay |
Theranostics |
High |
32042335
|
| 2020 |
Dot1L interacts directly with the transcription factor Zc3h10 and is recruited to promoters of thermogenic genes including Ucp1 in brown adipose tissue; Dot1L methylates H3K79 at these promoters to coactivate gene expression. Dot1L ablation in brown adipocytes (Ucp1-Cre) prevents Ucp1 and other thermogenic gene activation, reduces thermogenic capacity, and promotes adiposity. |
Co-immunoprecipitation; ChIP; conditional Dot1L KO (Ucp1-Cre); thermogenic gene expression; metabolic phenotyping |
eLife |
High |
33107819
|
| 2021 |
DOT1L depletion in erythroleukemic cells reduces TBP occupancy on thousands of genes and reduces Pol II occupancy at a significant fraction of direct DOT1L-bound target genes, indicating a role in transcription initiation rather than elongation (no effect on Pol II traveling ratio or elongation rate). Mechanistically, the DOT1L complex may regulate initiation by facilitating TFIID recruitment/stabilization; DOT1L also limits SAGA deubiquitinase recruitment to maintain H2Bub1 levels. |
DOT1L depletion; 4sUDRB-seq (elongation rate); TBP/Pol II ChIP; proteomic and biochemical studies; SAGA complex recruitment assays |
Proceedings of the National Academy of Sciences of the United States of America |
High |
34187895
|
| 2021 |
H4K16 acetylation allosterically stimulates yeast Dot1 H3K79 methyltransferase activity in a manner distinct from but coordinating with H2B ubiquitination (H2BUb). H4K16ac and H2BUb play crucial roles specifically in H3K79 di- and trimethylation in vitro and in vivo. |
In vitro methyltransferase assay with H4K16ac-modified nucleosomes; in vivo methylation state analysis; mechanistic structural/biochemical analysis |
Science (New York, N.Y.) |
High |
33479126
|
| 2021 |
AF10 (MLLT10) interacts with DOT1L and is required for higher-order H3K79 methylation in somatic cells; AF10-DOT1L interaction (but not a DOT1L-binding-impaired AF10 mutant) maintains H3K79 methylation and acts as a barrier to somatic cell reprogramming by sustaining fibroblast-specific gene programs. |
Proximity-based labeling proteomics; AF10 KO and re-expression; DOT1L-binding-impaired AF10 mutant rescue; H3K79 methylation western blot; transcriptomic analysis during reprogramming |
Epigenetics & chromatin |
High |
34215314
|
| 2021 |
Dot1 promotes H2B monoubiquitination through its N-terminus in a methyltransferase-independent manner; increased Dot1 dosage elevates H2Bub1 levels and this is exacerbated by loss of SAGA-DUB deubiquitinase activity, establishing bidirectional crosstalk between Dot1 and H2Bub1. |
Genetic interaction mapping with increased-dosage DOT1 alleles; H2Bub1 western blot; N-terminal deletion mutants of Dot1 |
Nucleic acids research |
Medium |
30203048
|
| 2022 |
Cryo-EM structures of Dot1L bound to H2BK34ub nucleosomes reveal that H2BK34-anchored ubiquitin does not directly contact Dot1L (unlike H2BK120ub), but instead induces DNA and histone distortion around the modified site to position Dot1L in a productive conformation, establishing nucleosome distortion as a distinct mechanism by which ubiquitination stimulates Dot1L. |
Cryo-EM structure determination of Dot1L-H2BK34ub nucleosome complex and H2BK34ub nucleosome alone; site-specific ubiquitylation |
Nature chemical biology |
High |
35739357
|
| 2022 |
DOT1L activity requires ubiquitin and nucleosome acidic patch binding for productive nucleosome engagement; these interactions drive conformational changes that stimulate DOT1L activity. Structure-guided mutations abolishing either ubiquitin or acidic patch binding impair cell proliferation in MV4;11 MLL-rearranged leukemia cells. |
Bulk and single-molecule biophysical measurements; structure-guided mutagenesis; cancer cell proliferation assays |
Cell reports |
High |
35172132
|
| 2022 |
H3K79me2 in DOT1L-regulated gene bodies and regulatory elements synergizes to promote expression of chamber-specific genes during cardiogenesis (particularly left ventricle-specific genes); H3K79me2 at specific regulatory elements also contributes to silencing of genes normally not expressed in cardiomyocytes. Embryonic cardiomyocyte-specific Dot1l ablation impairs postnatal cardiomyocyte cell cycle withdrawal. |
Embryonic cardiomyocyte-specific Dot1l conditional KO; H3K79me2 ChIP-seq; transcriptome analysis; cardiomyocyte cell cycle analysis |
Nature communications |
High |
36460641
|
| 2022 |
DOT1L directly regulates the transcription of NF-κB1 and NF-κB2 in vascular smooth muscle cells via H3K79me2 enrichment at their loci, which in turn induces expression of CCL5 and CXCL10, promoting atherosclerosis. VSMC-specific Dot1l KO in ApoE-/- mice significantly reduces atherosclerosis progression. |
VSMC-specific inducible KO mouse crossed with ApoE-/- model; RNA-seq; H3K79me2 ChIP-seq; VSMC phenotyping |
European heart journal |
High |
35292818
|
| 2018 |
Dot1 binding to chromatin can deregulate heterochromatin-mediated silencing by both H3K79 methylation-dependent and methylation-independent mechanisms; the methylation-independent mechanism requires histone acetyltransferase Gcn5 and can relocalize telomeres away from the nuclear periphery. |
Targeted Dot1 tethering; H3K79 methylation-dead Dot1 mutant; live-cell telomere imaging; genetic epistasis with Gcn5 |
Epigenetics & chromatin |
Medium |
21291527
|
| 2011 |
H3K79 methylation by Dot1 is required for global genomic repair (GGR) but not transcription-coupled repair (TCR) of UV damage in yeast; both mono/di/trimethylation states contribute to GGR, and the mechanism is independent of checkpoint activation or Rad16 expression regulation, suggesting methylated H3K79 serves as a docking site for GGR machinery. |
Dot1 deletion and H3K79 mutation; GGR vs. TCR assays; checkpoint activation analysis; Rad16 expression analysis |
The Journal of biological chemistry |
Medium |
21460225
|
| 2018 |
DOT1L-methylated H3K79 is involved in binding and recruiting XPC to UV-damage sites for nucleotide excision repair (NER); DOT1L loss impairs NER, leading to accumulation of UV-induced DNA damage and promotion of melanoma development in mice exposed to UV radiation. |
DOT1L KO mice + UVR; ChIP showing H3K79me at damage sites; XPC recruitment assay; NER efficiency measurement |
Nature communications |
Medium |
29343685
|
| 2017 |
DOT1L is recruited by the ENL-containing DOT1L complex to maintain transcription of MLL fusion target genes; MLL-ENL and MLL-AF10 constitutively activate transcription by inducing both AEP (AF4-ENL-P-TEFb)-dependent transcriptional activation and DOT1L-dependent transcriptional maintenance, mostly in the absence of PRC1. |
Genetic and biochemical analysis of complex membership; gene expression analysis; transformation assays with MLL-ENL and MLL-AF10 |
The Journal of clinical investigation |
Medium |
28394257
|
| 2016 |
DOT1L, via H3K79 dimethylation, facilitates histone H4 acetylation, which in turn regulates BRD4 binding to chromatin; BRD4 and DOT1L exist in separate protein complexes but functionally collaborate, especially at highly transcribed genes near superenhancers in MLL leukemia. |
Quantitative proteomics; chemoproteomics; biochemical fractionation; genetic disruption and small-molecule inhibition of BRD4 and DOT1L; H4 acetylation ChIP |
Nature structural & molecular biology |
High |
27294782
|
| 2020 |
DOT1L inhibition in AR-positive prostate cancer cells reduces MYC expression by loss of H3K79 methylation at a distal MYC enhancer bound by AR and DOT1L; reduced MYC upregulates E3 ubiquitin ligases HECTD4 and MYCBP2, which promote AR and MYC proteasomal degradation in a negative feedforward loop. |
DOT1L knockdown/inhibition in AR+ vs AR- cells; ChIP for H3K79me at MYC enhancer; MYC expression; E3 ligase identification; AR/MYC protein stability assays |
Nature communications |
High |
32814769
|
| 2022 |
SESAME complex-catalyzed H3T11 phosphorylation directly reduces Dot1 binding to chromatin and inhibits Dot1-catalyzed H3K79 trimethylation, thereby repressing autophagy gene transcription; the Reb1 telomere-associated factor recruits SESAME to telomeres to phosphorylate H3T11, preventing invasion of H3K79me3 into heterochromatin to maintain telomere silencing. |
Chromatin binding assays; H3K79me3 in vitro/in vivo methylation assays; autophagy gene expression assays; ChIP; Reb1 tethering at telomeres |
Nature communications |
Medium |
36473858
|
| 2022 |
H3K79me3 is selectively enriched at pericentromeric repetitive elements relative to H3K79me2 in mouse ESCs; DOT1L loss compromises pericentromeric satellite repeat transcription, destabilizes pericentromeric heterochromatin, and impairs preimplantation viability. This involves possible coordination between DOT1L and the chromatin remodeler SMARCA5. |
H3K79me2/me3 ChIP-seq; DOT1L KO ESCs and cleavage-stage embryos; satellite repeat transcription assays; heterochromatin marker analysis |
EMBO reports |
Medium |
37317657
|
| 2022 |
DOT1L directly regulates macrophage lipid biosynthesis gene programs including central regulators SREBP1 and SREBP2; DOT1L inhibition leads to macrophage hyperactivation, and myeloid-specific Dot1l deficiency reduces atherosclerotic plaque stability in vivo. |
Selective DOT1L inhibitor in mouse and human macrophages; myeloid-specific Dot1l KO mice; RNA-seq; SREBP pathway analysis; atherosclerosis plaque analysis |
Cell reports |
Medium |
36417856
|
| 2021 |
DOT1L promotes expression of HoxC transcription factors (HoxC9, HoxC10) in spermatogonial stem cells; H3K79me2 accumulates at HoxC9 and HoxC10 loci, and DOT1L is required for spermatogonial stem cell self-renewal and lifelong spermatogenesis. |
Conditional DOT1L KO in male germline; H3K79me2 ChIP at HoxC9/HoxC10; spermatogonial stem cell transplantation assay; gene expression analysis |
Genes & development |
High |
35738678
|
| 2023 |
DOT1L inhibition in apical progenitors (neural stem cells) increases neurogenic symmetric consumptive divisions over self-renewing asymmetric divisions, reduces activity of EZH2/PRC2 pathway, and converges on increased expression of asparagine synthetase (ASNS); ASNS overexpression phenocopies DOT1L inhibition, linking DOT1L activity to asparagine metabolism and neural stem cell lineage progression. |
Lineage tracing combined with single-cell RNA-seq of clonally related cells; DOT1L inhibition; ASNS overexpression; PRC2 pathway analysis |
EMBO reports |
Medium |
37382163
|
| 2021 |
DOT1L epigenetically promotes c-Myc transcription via H3K79me2 enrichment at the c-Myc promoter region (-682 to +284); H3K79me2 enrichment at this region is reduced after DOT1L knockdown, and c-Myc restoration rescues cell cycle arrest caused by DOT1L silencing in colorectal cancer cells. |
ChIP for H3K79me2 at c-Myc promoter; DOT1L siRNA knockdown; c-Myc rescue experiments; cell cycle analysis |
Clinical epigenetics |
Medium |
31888761
|
| 2010 |
Tandem affinity purification of DOT1L-containing complexes revealed that AF9, ENL, and NPM1 are major DOT1L-interacting proteins in mammalian cells; separate purification of AF9-, ENL-, and NPM1-containing complexes by mass spectrometry further defined a DOT1L interaction network suggesting roles in AF9/ENL-mediated transcription, RNA processing, and histone chaperoning via NPM1. |
Tandem affinity purification; mass spectrometry |
The protein journal |
Medium |
20431927
|
| 2019 |
DOT1L is required for proper DNA double-strand break response and repair via homologous recombination (HR) in colorectal cancer cells; DOT1L depletion or inhibition impairs γH2AX phosphorylation and HR repair efficiency, and DOT1L inhibition combined with chemotherapy shows additive effects on cell killing. |
siRNA knockdown and small-molecule inhibitors; γH2AX assay; HR repair assay; drug combination assays |
Clinical epigenetics |
Medium |
30616689
|
| 2024 |
PARP1 directly binds to the DOT1L gene promoter and promotes DOT1L transcription independently of its enzymatic activity; PARPi-induced PARP1 trapping amplifies this binding, enhancing DOT1L transcription. DOT1L in turn regulates PLCG2 and ABCB1 via H3K79me2, establishing a PARP1-DOT1L-PLCG2/ABCB1 resistance axis. |
ChIP for PARP1 at DOT1L promoter; RNA sequencing; CUT&Tag for H3K79me2 at PLCG2/ABCB1 loci; PARPi treatment; CDX and PDO models |
Molecular cancer |
Medium |
38778348
|