Affinage

DNAJA4

DnaJ homolog subfamily A member 4 · UniProt Q8WW22

Length
397 aa
Mass
44.8 kDa
Annotated
2026-06-09
40 papers in source corpus 12 papers cited in narrative 12 extracted findings
Cross-family judge faithfulness: 7/7 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

DNAJA4 is an Hsp40/DnaJ-family co-chaperone that couples protein quality control to lipid metabolism, cytoprotective stress responses, and the regulation of tumor cell behavior (PMID:16950652, PMID:37875476). As a sterol-responsive gene transcriptionally controlled by SREBP2, DNAJA4 promotes cholesterol biosynthesis by acting on HMG-CoA reductase post-transcriptionally, raising its activity and protein content without altering its mRNA, consistent with a co-translational chaperone effect on the rate-limiting biosynthetic enzyme (PMID:16950652). A recurring theme across its functions is the channeling of client proteins toward proteasomal degradation: in nasopharyngeal carcinoma DNAJA4 recruits the proteasome subunit PSMD2 to drive ubiquitin-proteasome-mediated turnover of MYH9, thereby suppressing epithelial-mesenchymal transition and metastasis (PMID:37875476). In keratinocytes responding to hyperthermic stress, DNAJA4 acts as a negative regulator of NF-κB signaling, restraining TNF-α and IL-1β transcription, and shapes F-actin/RhoA/ROCK1 cytoskeletal dynamics while sitting upstream of cytoprotective Clusterin and ERK signaling (PMID:29807809, PMID:32925288, PMID:32277496). DNAJA4 also functions downstream of a miR-199a/ApoE regulatory axis, supporting ApoE expression in melanoma and vascular smooth muscle cells (PMID:23142051, PMID:26720342). Functional divergence from other DNAJA members is evident, as human DNAJA4 fails to complement loss of yeast YDJ1 under stress, unlike DNAJA1 and DNAJA2 (PMID:32149145). In viral contexts DNAJA4 binds iridovirus PCNA to promote viral DNA replication (PMID:36672799) and promotes proteasomal degradation of hepatitis B virus HBx (PMID:39883729).

Mechanistic history

Synthesis pass · year-by-year structured walk · 9 steps
  1. 2006 Medium

    Established DNAJA4 as a sterol-responsive chaperone that promotes cholesterol biosynthesis, answering whether it has a metabolic function rather than a generic folding role.

    Evidence Subtractive hybridization, dominant-negative SREBP2 adenovirus, and [14C]-acetate cholesterol synthesis assay in adipocytes and COS cells

    PMID:16950652

    Open questions at the time
    • No direct demonstration of physical chaperone-client interaction with HMG-CoA reductase
    • Co-translational mechanism inferred from protein/activity increase without mRNA change, not directly visualized
    • No structural or domain-level analysis
  2. 2012 Medium

    Placed DNAJA4 in a miRNA-controlled pro-metastatic circuit by showing convergent miR-1908/miR-199a targeting suppresses DNAJA4 and its downstream effector ApoE.

    Evidence In vivo metastasis selection with miRNA overexpression/inhibition, LNA silencing, and invasion/angiogenesis assays in melanoma

    PMID:23142051

    Open questions at the time
    • DNAJA4's ApoE regulation inferred from miRNA context rather than direct DNAJA4 gain-of-function
    • Mechanism linking DNAJA4 to ApoE expression not defined
    • Does not address chaperone activity
  3. 2015 Medium

    Confirmed DNAJA4 as a downstream effector of the miR-199a/ApoE axis in a second cell type, generalizing its role in regulating ApoE.

    Evidence Atherosclerosis macroarray, NPR-C and Egr-1 knockdown, miR199a overexpression, and recombinant ApoE rescue in vascular smooth muscle cells

    PMID:26720342

    Open questions at the time
    • Molecular mechanism by which DNAJA4 supports ApoE expression remains undefined
    • No direct DNAJA4-ApoE interaction shown
    • Effect is correlative within a signaling cascade
  4. 2018 Medium

    Identified DNAJA4 as a negative regulator of NF-κB signaling in the hyperthermic stress response, defining a cytoprotective immunomodulatory role.

    Evidence CRISPR/Cas9 knockout, NF-κB inhibitor rescue, RT-qPCR and survival assays in HaCaT keratinocytes and ex vivo tissue

    PMID:29807809

    Open questions at the time
    • Direct molecular target linking DNAJA4 to NF-κB not identified
    • Single lab without reciprocal rescue by DNAJA4 re-expression
    • Mechanism of NF-κB suppression unknown
  5. 2020 Medium

    Extended DNAJA4's keratinocyte stress role to cytoskeletal and pro-survival signaling, placing it upstream of RhoA/ROCK1, F-actin dynamics, and Clusterin/ERK protective pathways.

    Evidence CRISPR/Cas9 knockout with immunofluorescence, RNAi of CLU, pharmacological ERK inhibition, and multiple readouts in HaCaT cells

    PMID:32277496 PMID:32925288

    Open questions at the time
    • No pharmacological or rescue validation of RhoA/ROCK1 pathway specificity
    • Whether cytoskeletal and Clusterin/ERK effects are direct chaperone functions is unresolved
    • Connection between these pathways and NF-κB regulation not integrated
  6. 2020 Medium

    Demonstrated functional divergence of DNAJA4 from other DNAJA members, showing it cannot substitute for yeast YDJ1 and even interferes with the stress response.

    Evidence Yeast ydj1Δ complementation with doxorubicin, cisplatin, and heat shock survival assays

    PMID:32149145

    Open questions at the time
    • Structural basis of functional divergence not defined
    • Native human clients of DNAJA4 not identified by this assay
    • Negative result does not rule out species-specific chaperone activity
  7. 2022 Medium

    Revealed a direct physical partnership with iridovirus PCNA, defining a role for DNAJA4 in supporting viral DNA replication and localizing it to the cytoplasm.

    Evidence Co-IP, GST-pulldown, co-immunofluorescence, overexpression/siRNA viral replication assays in carp epithelial cells (fish ortholog, 68% homology to human)

    PMID:36672799

    Open questions at the time
    • Whether human DNAJA4 binds PCNA orthologs is untested
    • Chaperone activity toward PCNA not biochemically resolved
    • Study uses a fish ortholog
  8. 2023 Medium

    Defined the mechanism of DNAJA4's metastasis suppression as PSMD2-dependent proteasomal degradation of MYH9, providing the clearest client/degradation pathway in the corpus.

    Evidence Co-IP, overexpression/knockdown, in vitro migration/invasion, in vivo metastasis models, and MYH9 rescue in nasopharyngeal carcinoma

    PMID:37875476

    Open questions at the time
    • Whether DNAJA4 acts as a classical Hsp40 in this context is not biochemically established
    • Generality beyond NPC unknown
    • Direct ubiquitin ligase partner not identified
  9. 2025 Low

    Implicated DNAJA4 in antiviral restriction of HBV by promoting ubiquitin-independent proteasomal degradation of HBx, complementing its proteasome-directed activity seen with MYH9.

    Evidence DNAJA4 overexpression with HBx stability Western blots and HBV replication assays, within an MSX1-focused study

    PMID:39883729

    Open questions at the time
    • DNAJA4's role is a secondary finding with limited direct mechanistic detail
    • Direct DNAJA4-HBx interaction not shown
    • Ubiquitin-independent degradation mechanism not defined

Open questions

Synthesis pass · forward-looking unresolved questions
  • The biochemical basis of DNAJA4 chaperone activity and the identity of its native human client proteins across these diverse pathways remain undefined.
  • No structural model or domain-function mapping for human DNAJA4
  • No direct demonstration of Hsp70-coupled chaperone cycle or J-domain function
  • Unclear whether metabolic, cytoprotective, degradation, and viral roles share a common chaperone mechanism

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0044183 protein folding chaperone 2 GO:0140096 catalytic activity, acting on a protein 2
Localization
GO:0005829 cytosol 1
Pathway
R-HSA-8953897 Cellular responses to stimuli 3 R-HSA-392499 Metabolism of proteins 2 R-HSA-1430728 Metabolism 1
Partners

Evidence

Reading pass · 12 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2006 DNAJA4 is a SREBP2-regulated chaperone: its mRNA expression changes in parallel with canonical SREBP2 targets (LDL receptor, HMG-CoA reductase) under altered sterol conditions, and dominant-negative SREBP2 adenoviral overexpression abolishes cholesterol-regulated DNAJA4 expression. Overexpression of DNAJA4 in COS cells specifically increases cholesterol synthesis from acetate and increases HMG-CoA reductase activity and protein content without altering HMG-CoA reductase mRNA or stability, suggesting a co-translational chaperone effect on the rate-limiting enzyme of the cholesterol biosynthesis pathway. Subtractive hybridization, adenoviral dominant-negative SREBP2 overexpression, [14C]-acetate cholesterol synthesis assay, Western blot, RT-PCR in 3T3-L1 adipocytes and COS cells Biochimica et biophysica acta Medium 16950652
2023 DNAJA4 suppresses epithelial-mesenchymal transition (EMT) and metastasis in nasopharyngeal carcinoma (NPC) by facilitating MYH9 protein degradation via the ubiquitin-proteasome pathway through recruitment of PSMD2. Overexpression of DNAJA4 suppressed NPC cell migration, invasion, and EMT in vitro and inhibited lymph node and lung metastatic colonization in vivo; these effects were reversed by MYH9 overexpression. Co-immunoprecipitation, overexpression/knockdown experiments, in vitro migration/invasion assays, in vivo metastasis mouse models, Western blot for ubiquitin-proteasome pathway components Cell death & disease Medium 37875476
2018 DNAJA4 deficiency in human keratinocytes (HaCaT cells, CRISPR/Cas9 knockout) enhances NF-κB activation induced by hyperthermia (44°C), augments transcription of TNF-α and IL-1β, reduces cell survival and proliferation, and these phenotypes are reversed by NF-κB inhibitors, indicating that DNAJA4 negatively regulates the NF-κB pathway in the hyperthermic stress response. CRISPR/Cas9 knockout, flow cytometry, MTS assay, RT-qPCR, Western blot, NF-κB inhibitor rescue in HaCaT cells and ex vivo tissue Journal of dermatological science Medium 29807809
2020 DNAJA4 regulates F-actin dynamics and the RhoA/ROCK1 signaling pathway in human keratinocytes in response to hyperthermia. DNAJA4-knockout HaCaT cells display elevated baseline F-actin expression and altered cytoskeleton morphology; after hyperthermia, DnaJA4-KO cells overshoot F-actin recovery above baseline, paralleled by changes in RhoA and ROCK1 expression and increased E-cadherin levels. CRISPR/Cas9 knockout, immunofluorescence, flow cytometry, Western blot in HaCaT cells Chinese medical journal Medium 32925288
2020 DNAJA4 deficiency in HaCaT cells augments hyperthermia-induced Clusterin (CLU) and phosphorylated ERK (p-ERK) expression. CLU deficiency further increases p-ERK. Both CLU and p-ERK play protective roles against hyperthermia by inhibiting apoptosis and maintaining cell cycle, respectively, placing DNAJA4 upstream of CLU and ERK in the keratinocyte heat stress response. CRISPR/Cas9 knockout, RNAi (CLU knockdown), pharmacological ERK inhibition (PD98059), RT-PCR, Western blot, flow cytometry, MTS assay in HaCaT cells and ex vivo tissues Journal of the European Academy of Dermatology and Venereology Medium 32277496
2012 miR-1908, miR-199a-5p, and miR-199a-3p convergently target DNAJA4 (and ApoE) to promote melanoma metastasis. DNAJA4 promotes ApoE expression, and suppression of DNAJA4 by these miRNAs reduces ApoE levels, thereby facilitating metastatic invasion and angiogenesis. In vivo metastasis selection, miRNA overexpression/inhibition, LNA-mediated miRNA silencing, functional invasion and angiogenesis assays, target validation Cell Medium 23142051
2015 In vascular smooth muscle cells, C2238/αANP downregulates DNAJA4 via NPR-C receptor-dependent upregulation of miR199a-3p and miR199a-5p (mediated by ROS-dependent Egr-1), and this DNAJA4 downregulation reduces ApoE expression; NPR-C knockdown rescues ApoE levels, establishing DNAJA4 as a downstream effector of the miR199a/ApoE regulatory axis in VSMCs. Atherosclerosis gene expression macroarray, NPR-C siRNA knockdown, Egr-1 knockdown, miR199a overexpression, recombinant ApoE rescue in VSMCs Cell death & disease Medium 26720342
2020 Human DNAJA4 does not functionally complement loss of the yeast YDJ1 (Hsp40 homolog) in protecting cells from doxorubicin, cisplatin, or heat shock, in contrast to DNAJA1 and DNAJA2 which do complement. Furthermore, DNAJA4 expression in wild-type yeast interferes with the cellular stress response, indicating functional divergence from other DNAJA family members. Yeast complementation assay (ydj1Δ mutant rescue), drug sensitivity assays (doxorubicin, cisplatin), heat shock survival in Saccharomyces cerevisiae BioMed research international Medium 32149145
2022 DNAJA4 (from epithelial papilloma of carp cells) localizes to the cytoplasm, is upregulated upon iridovirus (CGSIV) infection, and its overexpression promotes viral DNA replication and CGSIV replication, while siRNA knockdown attenuates them. DNAJA4 physically interacts with CGSIV proliferating cell nuclear antigen (PCNA) as shown by Co-IP, GST-pulldown, and co-immunofluorescence. Subcellular localization (immunofluorescence), overexpression, siRNA knockdown, viral replication assays, Co-IP, GST-pulldown, co-immunofluorescence Genes Medium 36672799
2025 MSX1-induced upregulation of DNAJA4 (and CRYAB) promotes ubiquitin-independent proteasomal degradation of hepatitis B virus HBx protein and represses HBV gene expression and genome replication. DNAJA4 overexpression alone promotes HBx degradation and suppresses HBV replication. Plasmid overexpression of DNAJA4, Western blot for HBx protein stability, HBV replication assays, correlation with MSX1 induction in cell models PLoS pathogens Low 39883729
2022 DNAJA4 affects proliferation, apoptosis, and enucleation during terminal erythropoiesis. Its expression is regulated by differential DNA methylation of its promoter during erythropoiesis, with hypermethylation associated with transcriptional silencing. Genome-wide DNA methylation analysis, gene expression correlation, functional assays for proliferation, apoptosis and enucleation during erythroid differentiation Epigenomics Low 36420716
2025 Droj2, the Drosophila ortholog of human DNAJA1/DNAJA4, promotes dendrite sculpting (pruning) of class IV dendritic arborization sensory neurons by genetically interacting with the GTP-binding protein Arf102F and promoting downregulation of the cell adhesion molecule Neuroglian prior to dendrite severing. Drosophila genetics (loss-of-function, epistasis), live imaging, immunostaining for Neuroglian in sensory neurons International journal of molecular sciences Low 37686022

Source papers

Stage 0 corpus · 40 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2012 Convergent multi-miRNA targeting of ApoE drives LRP1/LRP8-dependent melanoma metastasis and angiogenesis. Cell 347 23142051
2012 Genome-wide DNA methylation studies suggest distinct DNA methylation patterns in pediatric embryonal and alveolar rhabdomyosarcomas. Epigenetics 53 22419069
2016 Heat Stress and Lipopolysaccharide Stimulation of Chicken Macrophage-Like Cell Line Activates Expression of Distinct Sets of Genes. PloS one 48 27736938
2016 Genome-wide placental DNA methylation analysis of severely growth-discordant monochorionic twins reveals novel epigenetic targets for intrauterine growth restriction. Clinical epigenetics 46 27330572
2010 Discovery and characterization of nutritionally regulated genes associated with muscle growth in Atlantic salmon. Physiological genomics 45 20663983
2019 Dysplastic oral leukoplakia is molecularly distinct from leukoplakia without dysplasia. Oral diseases 44 31295760
2006 Fine mapping of the keratoconus with cataract locus on chromosome 15q and candidate gene analysis. Molecular vision 39 16735990
2004 Profiling of genes associated with transcriptional responses in mouse hippocampus after transient forebrain ischemia using high-density oligonucleotide DNA array. Brain research. Molecular brain research 34 14969731
2013 Functional epigenetic approach identifies frequently methylated genes in Ewing sarcoma. Epigenetics 33 24005033
2010 Transcriptional regulation of Wnt inhibitory factor-1 by Miz-1/c-Myc. Oncogene 33 20697356
2014 Smoking induces transcription of the heat shock protein system in the joints. Annals of the rheumatic diseases 29 24550170
2021 Molecular Signatures of Human Chronic Atrial Fibrillation in Primary Mitral Regurgitation. Cardiovascular therapeutics 25 34737791
2006 DnaJA4 is a SREBP-regulated chaperone involved in the cholesterol biosynthesis pathway. Biochimica et biophysica acta 25 16950652
2012 Mapping genetic determinants of coronary microvascular remodeling in the spontaneously hypertensive rat. Basic research in cardiology 24 23197152
2022 Comprehensive proteomic analysis to elucidate the anti-heat stress effects of nano-selenium in rainbow trout (Oncorhynchus mykiss). Ecotoxicology and environmental safety 20 35689887
2023 DNAJA4 suppresses epithelial-mesenchymal transition and metastasis in nasopharyngeal carcinoma via PSMD2-mediated MYH9 degradation. Cell death & disease 18 37875476
2016 Flavokawains A and B from kava (Piper methysticum) activate heat shock and antioxidant responses and protect against hydrogen peroxide-induced cell death in HepG2 hepatocytes. Pharmaceutical biology 18 26789234
2020 Network Analyses of the Differential Expression of Heat Shock Proteins in Glioma. DNA and cell biology 17 32429692
2016 Profile of the Spleen Transcriptome in Beef Steers with Variation in Gain and Feed Intake. Frontiers in genetics 14 27504120
2015 C2238/αANP modulates apolipoprotein E through Egr-1/miR199a in vascular smooth muscle cells in vitro. Cell death & disease 14 26720342
2012 Interactive cellular proteins related to classical swine fever virus non-structure protein 2 by yeast two-hybrid analysis. Molecular biology reports 13 23076522
2020 Evaluation of the Role of Human DNAJAs in the Response to Cytotoxic Chemotherapeutic Agents in a Yeast Model System. BioMed research international 11 32149145
2019 Association of cord blood methylation with neonatal leptin: An epigenome wide association study. PloS one 10 31851703
2023 Droj2 Facilitates Somatosensory Neurite Sculpting via GTP-Binding Protein Arf102F in Drosophila. International journal of molecular sciences 9 37686022
2018 DNAJA4 deficiency enhances NF-kappa B-related growth arrest induced by hyperthermia in human keratinocytes. Journal of dermatological science 9 29807809
2020 DnaJA4 is involved in responses to hyperthermia by regulating the expression of F-actin in HaCaT cells. Chinese medical journal 7 32925288
2022 DNAJA4 Promotes the Replication of the Chinese Giant Salamander Iridovirus. Genes 6 36672799
2021 Comparative transcriptomic analysis reveals the gonadal development-related gene response to environmental temperature in Mauremys mutica. Comparative biochemistry and physiology. Part D, Genomics & proteomics 5 34689019
2020 DNAJA4 deficiency augments hyperthermia-induced Clusterin and ERK activation: two critical protective factors of human keratinocytes from hyperthermia-induced injury. Journal of the European Academy of Dermatology and Venereology : JEADV 5 32277496
2021 Tandem Mass Tag-Based Quantitative Proteomic Analysis of Chicken Bursa of Fabricius Infected With Reticuloendotheliosis Virus. Frontiers in veterinary science 4 34113672
2021 Changes in the Proteome in the Development of Chronic Human Papillomavirus Infection-A Prospective Study in HIV Positive and HIV Negative Rwandan Women. Cancers 4 34885095
2025 Comprehensive co-expression analysis reveals candidate regulatory genes associated with carcass and meat quality traits in Neijiang and Large White pigs. Animal bioscience 3 40575980
2022 Identification of Novel mRNA Isoforms Associated with Acute Heat Stress Response Using RNA Sequencing Data in Sprague Dawley Rats. Biology 3 36552250
2025 Homeobox protein MSX-1 restricts hepatitis B virus by promoting ubiquitin-independent proteasomal degradation of HBx protein. PLoS pathogens 2 39883729
2024 Effect of Curcumin on Hepatic mRNA and lncRNA Co-Expression in Heat-Stressed Laying Hens. International journal of molecular sciences 2 38791430
2023 Transcriptomic profiles of the ruminal wall in Italian Mediterranean dairy buffaloes fed green forage. BMC genomics 2 36941576
2022 DNA methylation status of DNAJA4 is essential for human erythropoiesis. Epigenomics 2 36420716
2023 Genome-wide association study analysis of disease severity in Acne reveals novel biological insights. medRxiv : the preprint server for health sciences 1 38014089
2026 A Cross-Tissue Transcriptome Association Study Revealed Novel Susceptibility Genes for Chronic Obstructive Pulmonary Disease. International journal of chronic obstructive pulmonary disease 0 41821648
2025 Identifying PDAP1 as a Biological Target on Human Longevity: Integration of Mendelian Randomization, Cohort, and Cell Experiments Validation Study. Aging cell 0 40211681

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