Affinage

DNAJA4

DnaJ homolog subfamily A member 4 · UniProt Q8WW22

Length
397 aa
Mass
44.8 kDa
Annotated
2026-04-28
40 papers in source corpus 12 papers cited in narrative 12 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

DNAJA4 is an HSP40/DnaJ family co-chaperone with functionally distinct substrate specificity that operates at the intersection of cholesterol homeostasis, protein quality control, cytoskeletal regulation, and stress signaling. Its expression is transcriptionally controlled by SREBP2, and DNAJA4 promotes cholesterol synthesis by increasing HMG-CoA reductase protein content through a co-translational chaperone mechanism without altering mRNA or protein stability (PMID:16950652). DNAJA4 suppresses epithelial–mesenchymal transition and metastasis by recruiting the proteasome subunit PSMD2 to drive ubiquitin-proteasome degradation of the cytoskeletal protein MYH9 (PMID:37875476), negatively regulates NF-κB signaling and RhoA/ROCK1-dependent F-actin dynamics under heat stress in keratinocytes (PMID:29807809, PMID:32925288), and facilitates ubiquitin-independent proteasomal degradation of HBV HBx protein downstream of MSX1 (PMID:39883729). DNAJA4 also promotes ApoE expression, and its suppression by miR-199a and miR-1908 enhances melanoma metastasis (PMID:23142051).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2006 High

    Establishing DNAJA4 as a SREBP2-regulated co-chaperone that enhances cholesterol biosynthesis resolved how a DnaJ protein could be transcriptionally coupled to lipid homeostasis and identified a co-translational mechanism for increasing HMG-CoA reductase protein without altering its mRNA.

    Evidence Subtractive hybridization, dominant-negative SREBP2 adenoviral expression, COS cell overexpression with 14C-acetate incorporation, Western blot, and mRNA analysis

    PMID:16950652

    Open questions at the time
    • Direct physical interaction between DNAJA4 and nascent HMG-CoA reductase not demonstrated
    • HSP70 partner identity for this co-translational function unknown
    • In vivo cholesterol phenotype in DNAJA4-deficient animals not tested
  2. 2012 High

    Demonstrating that miR-1908, miR-199a-5p, and miR-199a-3p convergently suppress DNAJA4 and ApoE to promote melanoma metastasis placed DNAJA4 in a miRNA-regulated metastasis network and identified its role in sustaining ApoE expression.

    Evidence In vivo selection of metastatic human cancer cell populations, LNA inhibition, miRNA overexpression/inhibition, in vitro and in vivo metastasis assays

    PMID:23142051

    Open questions at the time
    • Mechanism by which DNAJA4 promotes ApoE expression not elucidated
    • Whether DNAJA4 chaperone activity is required for ApoE regulation not tested
  3. 2015 Medium

    Identifying C2238/αANP-driven upregulation of miR-199a via ROS-Egr-1 as a pathway that suppresses DNAJA4 and consequently ApoE in vascular smooth muscle cells extended the miRNA-DNAJA4-ApoE axis to cardiovascular biology.

    Evidence miRNA overexpression/inhibition, NPR-C and Egr-1 knockdown, ROS inhibition, Western blot and RT-PCR in VSMCs

    PMID:26720342

    Open questions at the time
    • Single-lab finding without independent replication
    • Direct DNAJA4 3′-UTR reporter validation not shown in VSMCs
    • In vivo cardiovascular phenotype of DNAJA4 loss not examined
  4. 2018 Medium

    CRISPR knockout of DNAJA4 in keratinocytes revealed it as a negative regulator of NF-κB signaling under heat stress, linking this co-chaperone to inflammatory cytokine control and cell survival during thermal injury.

    Evidence CRISPR/Cas9 KO in HaCaT cells, NF-κB inhibitor rescue, flow cytometry, MTS assay, RT-qPCR, Western blot

    PMID:29807809

    Open questions at the time
    • Direct molecular target through which DNAJA4 suppresses NF-κB not identified
    • Whether HSP70 partnership is required for NF-κB regulation unknown
    • In vivo skin phenotype not assessed
  5. 2020 Medium

    Extending the keratinocyte KO model showed DNAJA4 restrains RhoA/ROCK1-dependent F-actin dynamics and modulates CLU/ERK protective signaling during hyperthermia, broadening its stress-response role beyond NF-κB to cytoskeletal and survival pathways.

    Evidence CRISPR/Cas9 KO in HaCaT cells, immunofluorescence, Western blot, CLU siRNA knockdown, ERK inhibitor rescue

    PMID:32277496 PMID:32925288

    Open questions at the time
    • Whether DNAJA4 directly binds RhoA or ROCK1 not tested
    • Relationship between NF-κB and cytoskeletal phenotypes in KO cells not dissected
    • CLU and ERK changes may be compensatory rather than direct
  6. 2020 Medium

    Yeast complementation experiments demonstrated that DNAJA4 cannot substitute for Ydj1 under stress, establishing that DNAJA4 has distinct substrate specificity compared to DNAJA1 and DNAJA2.

    Evidence ydj1Δ yeast complementation with human DnaJA proteins, drug sensitivity and heat shock assays

    PMID:32149145

    Open questions at the time
    • Specific structural determinants of DNAJA4 substrate selectivity not mapped
    • Whether DNAJA4 cooperates with a different HSP70 partner than DNAJA1/A2 not addressed
  7. 2023 High

    Discovery that DNAJA4 recruits the proteasome subunit PSMD2 to drive ubiquitin-proteasome degradation of MYH9, thereby suppressing EMT and metastasis in nasopharyngeal carcinoma, provided the first defined proteasome-targeting mechanism for DNAJA4.

    Evidence Co-IP identifying PSMD2 interaction, DNAJA4 overexpression/knockdown, MYH9 rescue, in vivo metastasis models, proteasome inhibitor experiments

    PMID:37875476

    Open questions at the time
    • Whether DNAJA4 directly ubiquitinates MYH9 or recruits an E3 ligase not clarified
    • Structural basis for PSMD2 recruitment unknown
    • Generality of PSMD2-mediated degradation to other DNAJA4 substrates not tested
  8. 2025 Medium

    Showing that MSX1-induced DNAJA4 promotes ubiquitin-independent proteasomal degradation of HBV HBx protein demonstrated a second proteasome-targeting function and an antiviral role for DNAJA4.

    Evidence DNAJA4 overexpression, HBx protein stability by Western blot, HBV replication assays, correlation with MSX1

    PMID:39883729

    Open questions at the time
    • Direct physical interaction between DNAJA4 and HBx not demonstrated by reciprocal Co-IP or pulldown
    • Ubiquitin-independent degradation mechanism (proteasome subunit involvement) not defined
    • Single-lab finding without independent validation

Open questions

Synthesis pass · forward-looking unresolved questions
  • The identity of the HSP70 partner(s) through which DNAJA4 exerts its co-chaperone functions, the structural basis for its distinct substrate specificity relative to DNAJA1/A2, and whether its proteasome-targeting activities (via PSMD2 for MYH9; ubiquitin-independent for HBx) reflect a unified or context-dependent mechanism remain unresolved.
  • No HSP70 partner identified for any DNAJA4 function
  • No structural or domain-mapping studies on DNAJA4 substrate selectivity
  • Relationship between cholesterol co-translational function and proteasome-targeting function not explored

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0044183 protein folding chaperone 3 GO:0098772 molecular function regulator activity 3
Localization
GO:0005829 cytosol 1
Pathway
R-HSA-392499 Metabolism of proteins 3 GO:0140096 catalytic activity, acting on a protein 2 R-HSA-162582 Signal Transduction 2 R-HSA-1643685 Disease 2 R-HSA-1430728 Metabolism 1
Partners

Evidence

Reading pass · 12 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2006 DNAJA4 is a SREBP2-regulated chaperone: its mRNA expression is controlled by SREBP2 (demonstrated via dominant-negative SREBP2 adenoviral overexpression abolishing cholesterol-regulated changes in DNAJA4 expression), and DNAJA4 overexpression in COS cells increases cholesterol synthesis from acetate and increases HMG-CoA reductase activity and protein content without altering HMG-CoA reductase mRNA or stability, suggesting a co-translational chaperone effect on HMG-CoA reductase. Subtractive hybridization, adenoviral dominant-negative SREBP2 overexpression, COS cell overexpression with 14C-acetate cholesterol synthesis assay, Western blot, mRNA analysis Biochimica et biophysica acta High 16950652
2012 DNAJA4 promotes ApoE expression; miR-1908, miR-199a-5p, and miR-199a-3p convergently target DNAJA4 (and ApoE), and suppression of DNAJA4 by these miRNAs reduces ApoE levels, thereby promoting melanoma metastasis and angiogenesis. In vivo selection of human cancer cell populations, miRNA overexpression/inhibition, LNA treatment, in vitro and in vivo functional assays Cell High 23142051
2015 C2238/αANP downregulates DNAJA4 via NPR-C receptor-dependent upregulation of miR-199a-3p and miR-199a-5p (mediated by ROS-dependent Egr-1 activation), and reduced DNAJA4 leads to decreased ApoE expression in vascular smooth muscle cells. miRNA overexpression/inhibition, NPR-C knockdown, Egr-1 knockdown, ROS inhibition, Western blot, real-time PCR in VSMCs Cell death & disease Medium 26720342
2018 DNAJA4 deficiency (CRISPR/Cas9 knockout) in HaCaT keratinocytes enhances hyperthermia-induced NF-κB activation, promotes transcription of TNF-α and IL-1B, reduces cell survival and proliferation, and these phenotypes are reversed by NF-κB inhibitors, placing DNAJA4 as a negative regulator of NF-κB signaling under heat stress. CRISPR/Cas9 knockout, flow cytometry, MTS assay, rt-qPCR, Western blot, NF-κB inhibitor rescue experiments Journal of dermatological science Medium 29807809
2020 DNAJA4 regulates F-actin expression and cytoskeletal dynamics in HaCaT keratinocytes; DNAJA4 knockout increases F-actin levels and alters ROCK1 and RhoA expression profiles in response to hyperthermia, and also increases E-cadherin expression. CRISPR/Cas9 knockout, flow cytometry, immunofluorescence, Western blot Chinese medical journal Medium 32925288
2020 DNAJA4 deficiency in HaCaT keratinocytes further augments hyperthermia-induced Clusterin (CLU) and phospho-ERK expression; CLU and p-ERK serve as protective factors inhibiting apoptosis and maintaining cell cycle respectively, and CLU deficiency increases p-ERK expression, placing DNAJA4 upstream of CLU and ERK pathways during heat stress. CRISPR/Cas9 knockout, RNAi knockdown of CLU, PD98059 ERK inhibitor, RT-PCR, Western blot, flow cytometry, MTS assay Journal of the European Academy of Dermatology and Venereology Medium 32277496
2020 Human DNAJA4 does not functionally complement the yeast ydj1Δ mutant for protection against doxorubicin, cisplatin, or heat shock (unlike DNAJA1 and DNAJA2), and DNAJA4 expression in wild-type yeast interferes with the cellular response to stress, indicating DNAJA4 has distinct substrate/functional specificity from other DNAJA family members. Yeast complementation assay (ydj1Δ rescue), drug sensitivity assays, heat shock assays BioMed research international Medium 32149145
2023 DNAJA4 suppresses epithelial-mesenchymal transition (EMT) and metastasis in nasopharyngeal carcinoma by recruiting the proteasome subunit PSMD2 to promote ubiquitin-proteasome-mediated degradation of MYH9 protein; overexpression of MYH9 reverses the anti-metastatic effects of DNAJA4, establishing a DNAJA4-PSMD2-MYH9 axis. DNAJA4 overexpression/knockdown, Co-IP, in vitro migration/invasion assays, in vivo lymph node and lung metastasis models, MYH9 rescue overexpression, ubiquitin-proteasome inhibitor experiments Cell death & disease High 37875476
2022 EPC (fish) DNAJA4 is localized in the cytoplasm, is upregulated after Chinese giant salamander iridovirus (CGSIV) infection, promotes viral DNA replication when overexpressed, and physically interacts with CGSIV proliferating cell nuclear antigen (PCNA) as shown by Co-IP, GST-pulldown, and immunofluorescence. Subcellular localization (immunofluorescence), siRNA knockdown, overexpression, Co-IP, GST-pulldown, viral replication assays Genes Medium 36672799
2025 MSX1-induced upregulation of DNAJA4 (and CRYAB) promotes ubiquitin-independent proteasomal degradation of HBx protein and represses HBV gene expression and genome replication; overexpression of DNAJA4 alone promotes HBx degradation and suppresses HBV replication. DNAJA4 overexpression, Western blot for HBx protein stability, HBV replication assays, correlation with MSX1 expression PLoS pathogens Medium 39883729
2022 DNAJA4 affects proliferation, apoptosis, and enucleation during terminal erythropoiesis, and its expression is regulated by DNA methylation at its promoter; dysregulation of DNAJA4 expression is associated with erythroid disorders. Differential DNA methylation analysis, gene expression analysis during erythropoiesis, functional characterization of proliferation/apoptosis/enucleation phenotypes Epigenomics Low 36420716
2023 Drosophila Droj2 (ortholog of human DNAJA1/DNAJA4) promotes dendrite pruning of C4da sensory neurons by genetically interacting with Arf102F (a GTP-binding protein involved in protein trafficking) and promoting downregulation of the cell-adhesion molecule Neuroglian prior to dendrite severing. Drosophila genetics (loss-of-function, epistasis), live imaging, immunofluorescence International journal of molecular sciences Low 37686022

Source papers

Stage 0 corpus · 40 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2012 Convergent multi-miRNA targeting of ApoE drives LRP1/LRP8-dependent melanoma metastasis and angiogenesis. Cell 344 23142051
2012 Genome-wide DNA methylation studies suggest distinct DNA methylation patterns in pediatric embryonal and alveolar rhabdomyosarcomas. Epigenetics 53 22419069
2016 Heat Stress and Lipopolysaccharide Stimulation of Chicken Macrophage-Like Cell Line Activates Expression of Distinct Sets of Genes. PloS one 47 27736938
2016 Genome-wide placental DNA methylation analysis of severely growth-discordant monochorionic twins reveals novel epigenetic targets for intrauterine growth restriction. Clinical epigenetics 45 27330572
2010 Discovery and characterization of nutritionally regulated genes associated with muscle growth in Atlantic salmon. Physiological genomics 45 20663983
2019 Dysplastic oral leukoplakia is molecularly distinct from leukoplakia without dysplasia. Oral diseases 44 31295760
2006 Fine mapping of the keratoconus with cataract locus on chromosome 15q and candidate gene analysis. Molecular vision 39 16735990
2004 Profiling of genes associated with transcriptional responses in mouse hippocampus after transient forebrain ischemia using high-density oligonucleotide DNA array. Brain research. Molecular brain research 34 14969731
2013 Functional epigenetic approach identifies frequently methylated genes in Ewing sarcoma. Epigenetics 33 24005033
2010 Transcriptional regulation of Wnt inhibitory factor-1 by Miz-1/c-Myc. Oncogene 32 20697356
2014 Smoking induces transcription of the heat shock protein system in the joints. Annals of the rheumatic diseases 29 24550170
2021 Molecular Signatures of Human Chronic Atrial Fibrillation in Primary Mitral Regurgitation. Cardiovascular therapeutics 25 34737791
2006 DnaJA4 is a SREBP-regulated chaperone involved in the cholesterol biosynthesis pathway. Biochimica et biophysica acta 25 16950652
2012 Mapping genetic determinants of coronary microvascular remodeling in the spontaneously hypertensive rat. Basic research in cardiology 24 23197152
2022 Comprehensive proteomic analysis to elucidate the anti-heat stress effects of nano-selenium in rainbow trout (Oncorhynchus mykiss). Ecotoxicology and environmental safety 18 35689887
2023 DNAJA4 suppresses epithelial-mesenchymal transition and metastasis in nasopharyngeal carcinoma via PSMD2-mediated MYH9 degradation. Cell death & disease 17 37875476
2020 Network Analyses of the Differential Expression of Heat Shock Proteins in Glioma. DNA and cell biology 17 32429692
2016 Flavokawains A and B from kava (Piper methysticum) activate heat shock and antioxidant responses and protect against hydrogen peroxide-induced cell death in HepG2 hepatocytes. Pharmaceutical biology 17 26789234
2016 Profile of the Spleen Transcriptome in Beef Steers with Variation in Gain and Feed Intake. Frontiers in genetics 14 27504120
2015 C2238/αANP modulates apolipoprotein E through Egr-1/miR199a in vascular smooth muscle cells in vitro. Cell death & disease 14 26720342
2012 Interactive cellular proteins related to classical swine fever virus non-structure protein 2 by yeast two-hybrid analysis. Molecular biology reports 13 23076522
2020 Evaluation of the Role of Human DNAJAs in the Response to Cytotoxic Chemotherapeutic Agents in a Yeast Model System. BioMed research international 11 32149145
2019 Association of cord blood methylation with neonatal leptin: An epigenome wide association study. PloS one 9 31851703
2018 DNAJA4 deficiency enhances NF-kappa B-related growth arrest induced by hyperthermia in human keratinocytes. Journal of dermatological science 9 29807809
2023 Droj2 Facilitates Somatosensory Neurite Sculpting via GTP-Binding Protein Arf102F in Drosophila. International journal of molecular sciences 8 37686022
2020 DnaJA4 is involved in responses to hyperthermia by regulating the expression of F-actin in HaCaT cells. Chinese medical journal 7 32925288
2022 DNAJA4 Promotes the Replication of the Chinese Giant Salamander Iridovirus. Genes 5 36672799
2021 Comparative transcriptomic analysis reveals the gonadal development-related gene response to environmental temperature in Mauremys mutica. Comparative biochemistry and physiology. Part D, Genomics & proteomics 5 34689019
2020 DNAJA4 deficiency augments hyperthermia-induced Clusterin and ERK activation: two critical protective factors of human keratinocytes from hyperthermia-induced injury. Journal of the European Academy of Dermatology and Venereology : JEADV 5 32277496
2021 Tandem Mass Tag-Based Quantitative Proteomic Analysis of Chicken Bursa of Fabricius Infected With Reticuloendotheliosis Virus. Frontiers in veterinary science 4 34113672
2021 Changes in the Proteome in the Development of Chronic Human Papillomavirus Infection-A Prospective Study in HIV Positive and HIV Negative Rwandan Women. Cancers 4 34885095
2025 Comprehensive co-expression analysis reveals candidate regulatory genes associated with carcass and meat quality traits in Neijiang and Large White pigs. Animal bioscience 3 40575980
2022 Identification of Novel mRNA Isoforms Associated with Acute Heat Stress Response Using RNA Sequencing Data in Sprague Dawley Rats. Biology 3 36552250
2024 Effect of Curcumin on Hepatic mRNA and lncRNA Co-Expression in Heat-Stressed Laying Hens. International journal of molecular sciences 2 38791430
2023 Transcriptomic profiles of the ruminal wall in Italian Mediterranean dairy buffaloes fed green forage. BMC genomics 2 36941576
2022 DNA methylation status of DNAJA4 is essential for human erythropoiesis. Epigenomics 2 36420716
2025 Homeobox protein MSX-1 restricts hepatitis B virus by promoting ubiquitin-independent proteasomal degradation of HBx protein. PLoS pathogens 1 39883729
2023 Genome-wide association study analysis of disease severity in Acne reveals novel biological insights. medRxiv : the preprint server for health sciences 1 38014089
2026 A Cross-Tissue Transcriptome Association Study Revealed Novel Susceptibility Genes for Chronic Obstructive Pulmonary Disease. International journal of chronic obstructive pulmonary disease 0 41821648
2025 Identifying PDAP1 as a Biological Target on Human Longevity: Integration of Mendelian Randomization, Cohort, and Cell Experiments Validation Study. Aging cell 0 40211681