Affinage

DELE1

DAP3-binding cell death enhancer 1 · UniProt Q14154

Length
515 aa
Mass
55.9 kDa
Annotated
2026-06-09
18 papers in source corpus 10 papers cited in narrative 11 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

DELE1 is the central relay of the mitochondrial integrated stress response (ISR), coupling diverse mitochondrial perturbations to cytosolic eIF2α kinase signaling (PMID:32132707, PMID:32132706). Under steady-state conditions DELE1 is continuously imported across both mitochondrial membranes into the matrix, where it is rapidly degraded by the LONP1 protease, limiting basal signaling; processing of its N-terminal sorting signals by matrix proteases (MPP, PITRM1) and its progression through the import route render it a sensor of import integrity (PMID:35388015, PMID:37327776). Upon mitochondrial stress—membrane depolarization, import defects, iron deficiency, or inner-membrane perturbation—the inner-membrane protease OMA1 cleaves DELE1, generating a short C-terminal fragment that accumulates in the cytosol, binds the eIF2α kinase HRI (EIF2AK1) through its C-terminal region, and activates it to phosphorylate eIF2α and induce ATF4 (PMID:32132707, PMID:32132706). The released C-terminal fragment self-assembles into a D4-symmetric octamer via two hydrophobic inter-subunit interfaces, and this oligomerization is required for full HRI activation (PMID:37550454). Protease usage is stress- and cell-type-specific: HtrA2 generates an alternative cleavage product under non-depolarizing import stress, and OMA1 is dispensable in certain contexts such as prohibitin-targeted import disruption (PMID:38555279, PMID:41291210); iron deficiency and surface import arrest can stabilize and activate DELE1 independently of OMA1 cleavage (PMID:35388015, PMID:37327776). Beyond inducing ATF4, DELE1–HRI signaling restrains PINK1-dependent mitophagy by preserving mitochondrial import efficiency. DELE1 was first identified as a DAP3-binding protein that sensitizes cells to TNFα/TRAIL-induced, caspase-dependent apoptosis (PMID:20563667).

Mechanistic history

Synthesis pass · year-by-year structured walk · 11 steps
  1. 2010 Medium

    Before its mitochondrial role was known, DELE1 was placed in apoptotic signaling, establishing an early functional link to programmed cell death.

    Evidence Yeast two-hybrid, Co-IP, and overexpression/knockdown with caspase activation readouts in mammalian cells

    PMID:20563667

    Open questions at the time
    • Did not connect DELE1 to mitochondrial stress sensing or the ISR
    • Mechanism linking DAP3 binding to caspase activation not resolved
    • Single lab, no orthogonal validation of the DAP3 interaction
  2. 2020 High

    Established DELE1 as the missing relay between mitochondrial stress and the cytosolic ISR, answering how mitochondrial damage triggers eIF2α phosphorylation.

    Evidence Genome-wide CRISPRi screens, Co-IP, fractionation, and in vitro kinase/ISR assays, replicated by two concurrent studies

    PMID:32132706 PMID:32132707

    Open questions at the time
    • Structural basis of HRI activation not defined
    • Full set of activating stresses and proteases not yet mapped
  3. 2020 High

    Mapped the activating determinant to the C-terminal cleavage product, showing the short DELE1 form is the functional HRI-engaging species.

    Evidence Truncation/domain-mapping constructs, Co-IP, and functional ISR activation assays in haploid and mammalian cells

    PMID:32132706 PMID:32132707

    Open questions at the time
    • Stoichiometry of the DELE1–HRI interaction unknown at this stage
    • Whether the fragment acts alone or as a complex not yet addressed
  4. 2022 High

    Reframed DELE1 as a surveyor of the mitochondrial import route, explaining how import defects activate signaling without requiring OMA1 cleavage.

    Evidence Genome-wide genetic screens, import and fractionation assays, sorting-signal mutagenesis, and PITRM1/MPP knockouts

    PMID:35388015

    Open questions at the time
    • How unprocessed precursors engage HRI mechanistically not detailed
    • Relative contributions of OMA1 vs import-arrest routes in vivo unclear
  5. 2022 Medium

    Extended the OMA1–DELE1–HRI axis to disease, showing it cooperates with ER stress signaling to drive apoptosis in cancer cells.

    Evidence OMA1 knockdown, cisplatin treatment in cells and xenografts, Co-IP for DELE1–EIF2AK1, and EIF2S1/ATF4 western blots

    PMID:35163244

    Open questions at the time
    • PHB2/STOML2 regulation of OMA1 upstream of DELE1 not mechanistically dissected
    • Single lab; generality across tumor types untested
  6. 2023 High

    Solved the structural mechanism of activation, revealing that the cleaved fragment must oligomerize into a D4-symmetric octamer to fully activate HRI.

    Evidence Cryo-EM structure, oligomerization-interface mutagenesis, in vitro reconstitution, and cell-based ISR assays

    PMID:37550454

    Open questions at the time
    • Structure of the DELE1–HRI activated complex not determined
    • How oligomerization converts binding into kinase activation unresolved
  7. 2023 High

    Defined LONP1-dependent degradation as the basal brake and import arrest as an OMA1-independent activation mode under iron deficiency.

    Evidence Iron chelation, LONP1 knockout/knockdown, import/stability assays, and flow-based cell death assays in erythroid models

    PMID:37327776

    Open questions at the time
    • How iron status is sensed by the import machinery not defined
    • Physiological role in erythropoiesis in vivo not established
  8. 2024 Medium

    Distinguished stress-specific cleavage products and proteases, identifying HtrA2 as a non-depolarizing-stress protease with Parkinson's-disease relevance.

    Evidence Endogenous DELE1 western blots, OMA1/HtrA2 siRNA across cell lines, and PD-associated HtrA2 mutant overexpression

    PMID:38555279

    Open questions at the time
    • Functional consequences of DELE1-S vs DELE1-VS not fully resolved
    • Basis for cell-type-specific OMA1 dependence unexplained
  9. 2024 Medium

    Uncovered an ATF4-independent output of DELE1–HRI signaling that suppresses PINK1-dependent mitophagy by maintaining import efficiency.

    Evidence DELE1/HRI loss-of-function, PINK1 accumulation and import efficiency assays (preprint)

    Open questions at the time
    • Preprint, single lab, not peer-reviewed
    • Molecular link between eIF2α phosphorylation and import efficiency not defined
  10. 2025 Medium

    Implicated prohibitins in controlling DELE1 inner-membrane localization, defining another OMA1-independent route to ISR activation.

    Evidence Fluorizoline treatment, PHB knockdown, fractionation, and OMA1 knockout/ISR assays in HeLa and HAP1 cells

    PMID:41291210

    Open questions at the time
    • How PHBs physically retain DELE1 at the inner membrane not resolved
    • Protease, if any, generating the active species after PHB loss unidentified
  11. 2026 Medium

    Demonstrated the oligomerization interface is a druggable node by designing binders that block octamer assembly and suppress ISR while sparing HRI binding.

    Evidence De novo protein design, in vitro binding/oligomerization assays, crystal structure, mutagenesis, and ATF4 ISR assays (preprint)

    PMID:41717097

    Open questions at the time
    • Preprint, single lab
    • In vivo efficacy and selectivity untested

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the diverse stress inputs, protease choices, and oligomerization state are integrated to set ISR amplitude and to balance survival versus apoptosis or mitophagy remains unresolved.
  • No structure of the activated DELE1 octamer–HRI complex
  • Determinants of cell-type-specific protease usage unknown
  • In vivo physiological and disease roles only partially mapped

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 3 GO:0140313 molecular sequestering activity 1
Localization
GO:0005739 mitochondrion 2 GO:0005829 cytosol 2
Pathway
R-HSA-392499 Metabolism of proteins 2 R-HSA-5357801 Programmed Cell Death 2 R-HSA-8953897 Cellular responses to stimuli 2
Complex memberships
DELE1 D4-symmetric octamer

Evidence

Reading pass · 11 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2020 DELE1 is associated with the inner mitochondrial membrane under steady-state conditions; mitochondrial stress (e.g., membrane depolarization) activates the OMA1 protease, which cleaves DELE1; the resulting short form accumulates in the cytosol where it directly interacts with and activates the eIF2α kinase HRI, triggering the integrated stress response (ISR) and ATF4 translation. Genome-wide CRISPR interference screen, co-immunoprecipitation, subcellular fractionation, in vitro kinase assays, loss-of-function (siRNA/CRISPRi) with defined eIF2α phosphorylation and ATF4 induction readouts Nature High 32132706 32132707
2020 The C-terminal portion of DELE1 is sufficient to bind and activate HRI in the cytosol; stress-induced OMA1-dependent cleavage generates a short DELE1 form that accumulates in the cytosol and engages HRI via its C-terminal region. Domain-mapping experiments, truncation constructs, Co-IP, functional ISR activation assays in haploid cells and mammalian cells Nature High 32132706 32132707
2022 DELE1 is continuously imported across both mitochondrial membranes into the matrix, surveying diverse perturbations along the import route. Proteolytic removal of N-terminal sorting signals licenses DELE1 molecules in transit for mitochondrial release and stress signaling. Import defects at the mitochondrial surface allow unprocessed DELE1 precursors to bind and activate HRI directly, without the need for OMA1-mediated cleavage. Matrix proteases PITRM1 and MPP also regulate DELE1 activation by controlling presequence processing. Genome-wide genetic screens, subcellular fractionation, import assays, mutational analysis of sorting signals, loss-of-function knockouts of PITRM1/MPP Nature communications High 35388015
2023 The cryo-EM structure of the C-terminal cleavage product of human DELE1 reveals it assembles into a high-order octameric complex with D4 symmetry via two sets of hydrophobic inter-subunit interactions. Mutagenesis of key oligomerization residues disrupts octamer formation in vitro and in cells, and assembly-impaired mutants are compromised in their ability to activate HRI-dependent ISR signaling. Cryo-electron microscopy structure determination, site-directed mutagenesis, in vitro reconstitution of oligomer assembly, cell-based ISR activation assays Nature structural & molecular biology High 37550454
2023 Under iron-deficient conditions, DELE1 mitochondrial import is arrested, stabilizing DELE1 on the mitochondrial surface to activate HRI-mediated ISR. Under steady-state conditions, DELE1 is degraded by the mitochondrial matrix-resident protease LONP1 shortly after import, limiting basal signaling. Iron chelation blocks LONP1-dependent degradation by preventing complete import. Iron chelation experiments, LONP1 knockout/knockdown, DELE1 import and stability assays, flow cytometry-based cell death assays in erythroid cell models Molecular cell High 37327776
2010 DELE1 (originally called DELE) was identified as a direct binding partner of DAP3 (death-associated protein 3). Stable overexpression of DELE1 sensitizes cells to TNF-α- and TRAIL-induced apoptosis, and knockdown of DELE1 rescues cells from apoptosis by these stimuli and inhibits caspase-3, -8, and -9 activation. Yeast two-hybrid screening, co-immunoprecipitation in mammalian cells, stable overexpression, siRNA knockdown with caspase activation readouts Apoptosis Medium 20563667
2024 Mitochondrial protein import stress (MPIS) is an overarching stress that triggers DELE1 cleavage and HRI activation. Endogenous DELE1 can be cleaved into two forms: DELE1-S (generated under depolarizing stress) and DELE1-VS (generated only under non-depolarizing MPIS). The mitochondrial protease HtrA2 mediates DELE1 cleavage into DELE1-VS; a Parkinson's disease-associated HtrA2 mutant displays reduced DELE1 processing. OMA1 is required for DELE1 cleavage in HeLa cells but is dispensable in HEK293T cells, indicating cell-type-specific protease usage. Endogenous DELE1 detection by western blot, siRNA knockdown of OMA1 and HtrA2 in multiple cell lines, overexpression of PD-associated HtrA2 mutants, DELE1 cleavage assays Communications biology Medium 38555279
2024 The ISR mediated by DELE1-HRI suppresses PINK1-dependent mitophagy under non-depolarizing mitochondrial stress by positively regulating mitochondrial protein import efficiency, independent of ATF4 activation. Without ISR, increased protein synthesis overwhelms the import machinery, reducing efficiency and enabling PINK1 accumulation to trigger mitophagy. DELE1/HRI loss-of-function, PINK1 accumulation assays, protein import efficiency measurements, ATF4-independent pathway analysis bioRxivpreprint Medium
2025 Prohibitins (PHBs) regulate DELE1 localization at the inner mitochondrial membrane; targeting PHBs (by fluorizoline treatment or knockdown) impairs the mitochondrial protein import pre-sequence pathway and causes accumulation of DELE1 outside mitochondria, activating ISR via DELE1-HRI. OMA1 is dispensable for ISR activation following PHB targeting, distinguishing this from canonical depolarization-induced DELE1 cleavage. Fluorizoline treatment, PHB siRNA knockdown, DELE1 localization by fractionation, OMA1 knockout/knockdown, ISR activation assays in HeLa and HAP1 cells Cell death and differentiation Medium 41291210
2026 De novo designed protein binders engage a critical oligomerization interface on DELE1, block DELE1 oligomerization in vitro while preserving DELE1's ability to bind HRI, and suppress ATF4 induction and ISR activation during mitochondrial stress in cells. A crystal structure of a representative binder confirms engagement of the oligomerization interface, validated by mutagenesis. De novo protein design, in vitro binding and oligomerization assays, crystal structure determination, mutagenesis, cell-based ISR activation (ATF4) assays, mitochondrial morphology imaging bioRxivpreprint Medium 41717097
2022 In ovarian cancer cells, OMA1 activation leads to DELE1 cleavage and cytoplasmic interaction of cleaved DELE1 with EIF2AK1 (HRI), which cooperates with ER stress sensor EIF2AK3 to amplify the EIF2S1/ATF4 signal and promote apoptosis. PHB2/STOML2 complex regulates OMA1 protease activity upstream of DELE1. OMA1 knockdown, cisplatin treatment in cells and mouse xenograft models, western blot for DELE1 cleavage and EIF2S1/ATF4, Co-IP for DELE1-EIF2AK1 interaction International journal of molecular sciences Medium 35163244

Source papers

Stage 0 corpus · 18 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2020 Mitochondrial stress is relayed to the cytosol by an OMA1-DELE1-HRI pathway. Nature 531 32132707
2020 A pathway coordinated by DELE1 relays mitochondrial stress to the cytosol. Nature 402 32132706
2022 DELE1 tracks perturbed protein import and processing in human mitochondria. Nature communications 80 35388015
2023 A mitochondrial iron-responsive pathway regulated by DELE1. Molecular cell 67 37327776
2023 DELE1 oligomerization promotes integrated stress response activation. Nature structural & molecular biology 39 37550454
2022 The Mitochondrial PHB2/OMA1/DELE1 Pathway Cooperates with Endoplasmic Reticulum Stress to Facilitate the Response to Chemotherapeutics in Ovarian Cancer. International journal of molecular sciences 30 35163244
2010 Identification of DELE, a novel DAP3-binding protein which is crucial for death receptor-mediated apoptosis induction. Apoptosis : an international journal on programmed cell death 30 20563667
2022 DELE1 is protective for mitochondrial cardiomyopathy. Journal of molecular and cellular cardiology 22 36539111
2024 Cytosolic retention of HtrA2 during mitochondrial protein import stress triggers the DELE1-HRI pathway. Communications biology 19 38555279
2024 DELE1 maintains muscle proteostasis to promote growth and survival in mitochondrial myopathy. The EMBO journal 18 39379554
2017 Identification of G-quadruplex structures that possess transcriptional regulating functions in the Dele and Cdc6 CpG islands. BMC molecular biology 18 28655335
2023 DELE1 haploinsufficiency causes resistance to mitochondrial stress-induced apoptosis in monosomy 5/del(5q) AML. Leukemia 10 38102204
2022 Death associated protein‑3 (DAP3) and DAP3 binding cell death enhancer‑1 (DELE1) in human colorectal cancer, and their impacts on clinical outcome and chemoresistance. International journal of oncology 9 36382667
2025 Targeting prohibitins activates the ISR through DELE1-HRI by impairing protein import into the mitochondrial matrix. Cell death and differentiation 2 41291210
2025 Trifloxystrobin induces oxidative stress-dependent activation of the OMA1-DELE1-HRI integrated stress response leading to apoptosis in human neuroblastoma cells. Environmental pollution (Barking, Essex : 1987) 2 41422903
2024 DELE1 promotes translation-associated homeostasis, growth, and survival in mitochondrial myopathy. bioRxiv : the preprint server for biology 2 38529505
2026 De novo design of protein binders that target DELE1 to inhibit the mitochondrial stress response. bioRxiv : the preprint server for biology 0 41717097
2026 Understanding the OMA1-DELE1-HRI Axis and PINK1-parkin-mediated Mitophagy in Parkinson's Disease. CNS & neurological disorders drug targets 0 42261169

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