Affinage

CYLC1

Cylicin-1 · UniProt P35663

Length
651 aa
Mass
74.2 kDa
Annotated
2026-06-09
7 papers in source corpus 4 papers cited in narrative 4 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

CYLC1 (Cylicin 1) is a testis-specific structural protein of the sperm calyx within the perinuclear theca, where it is required for proper calyx assembly during spermiogenesis and for normal sperm head morphogenesis (PMID:38013430). Cylicin-1 self-associates and bridges the inner acrosomal membrane to the nuclear envelope by interacting with the IAM protein SPACA1 and the NE protein FAM209, forming an 'IAM-cylicins-NE' sandwich structure that physically anchors the acrosome to the sperm nucleus (PMID:38573307). Loss of Cylicin-1 in mice disrupts calyx assembly and detaches the acrosome from the nucleus, producing malformed sperm heads, impaired cytoplasmic shedding, reduced epididymal sperm counts, and defective motility, resulting in male subfertility (PMID:38013430, PMID:38573307). In humans, CYLC1 missense variants do not alter protein abundance but mislocalize the protein and disrupt acrosome morphology and the distribution of the sperm factor PLCZ1, linking CYLC1 dysfunction to male infertility (PMID:41075067).

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2023 High

    Established that CYLC1 is a structural component of the sperm calyx whose loss disrupts perinuclear theca assembly, defining its role in spermiogenesis and male fertility.

    Evidence CRISPR/Cas9 Cylc1 knockout mouse with immunofluorescence, electron microscopy, and fertility assays

    PMID:38013430

    Open questions at the time
    • Did not define the molecular binding partners that recruit Cylicin-1 to the calyx
    • Subfertility rather than complete sterility leaves the requirement incompletely defined
  2. 2024 High

    Resolved how CYLC1 anchors the acrosome to the nucleus by identifying an IAM-cylicins-NE sandwich built on interactions with SPACA1 and FAM209, explaining the acrosome-detachment phenotype.

    Evidence Co-immunoprecipitation, Cylc1 knockout mouse, immunofluorescence, and whole exome sequencing of infertile men

    PMID:38573307

    Open questions at the time
    • Stoichiometry and structural arrangement of the sandwich complex not determined
    • Which other PT proteins participate not fully enumerated
  3. 2024 Medium

    Showed that human CYLC1 missense variants act by mislocalizing the protein rather than reducing its expression, and that this perturbs acrosome morphology and PLCZ1 distribution, connecting variant biology to functional consequences.

    Evidence Western blotting, immunofluorescence, CRISPR/Cas9 Cylc1 KO mice, SEM/TEM, and Sanger sequencing of variant carriers

    PMID:41075067

    Open questions at the time
    • Single-lab study without independent replication
    • Mechanistic basis for variant-induced mislocalization not established
    • Causal link between PLCZ1 mislocalization and fertilization outcome not demonstrated

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether mammalian CYLC1 retains any microtubule-regulatory or tubulin-sequestering activity analogous to its C. elegans homologues remains unresolved.
  • C. elegans cylc-1/cylc-2 microtubule-regulation function has not been tested in mammalian CYLC1
  • No biochemical activity assigned to mammalian CYLC1 beyond its structural anchoring role

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 2 GO:0060090 molecular adaptor activity 1
Localization
GO:0005635 nuclear envelope 1 GO:0005856 cytoskeleton 1
Pathway
R-HSA-1474165 Reproduction 2
Complex memberships
IAM-cylicins-NE sandwich complexsperm calyx / perinuclear theca

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2023 CYLC1 (Cylicin 1) is a structural component of the sperm calyx within the perinuclear theca. CRISPR/Cas9-mediated Cylc1 knockout in mice caused male subfertility, with phenotypic analysis revealing that loss of Cylicins prevents proper calyx assembly during spermiogenesis, resulting in decreased epididymal sperm counts, impaired shedding of excess cytoplasm, severe structural malformations, and impaired sperm motility. CRISPR/Cas9 knockout mouse model, phenotypic characterization, immunofluorescence, electron microscopy eLife High 38013430
2024 Cylicin-1 interacts with itself, several other perinuclear theca (PT) proteins, the inner acrosomal membrane (IAM) protein SPACA1, and the nuclear envelope (NE) protein FAM209, forming an 'IAM-cylicins-NE' sandwich structure that anchors the acrosome to the nucleus. Loss of Cylicin-1 in mice leads to acrosome detachment from the nucleus and malformed sperm heads. Co-immunoprecipitation (protein-protein interaction), Cylc1 knockout mouse model, immunofluorescence, whole exome sequencing of infertile men eLife High 38573307
2024 CYLC1 variants (p.K328E and p.K324M) do not affect protein expression levels but alter the localization of CYLC1 protein and acrosome morphology in human sperm. Cylc1 knockout mice show acrosome-nuclear detachment by ultrastructural analysis (SEM/TEM). The localization of PLCZ1 was also altered in sperm from men carrying CYLC1 variants. Western blotting, immunofluorescence, CRISPR/Cas9 Cylc1 KO mice, SEM/TEM, Sanger sequencing Journal of assisted reproduction and genetics Medium 41075067
2016 C. elegans homologues of human CYLC1 (named cylc-1 and cylc-2), which share sequence homology with stathmins and encode small, highly basic proteins with KKD/E repeats, regulate local tubulin concentration and microtubule growth deceleration at the cell periphery during smooth muscle cell differentiation. Depletion of these homologues abolished the local decrease in soluble tubulin concentration and microtubule deceleration behavior. RNAi/genetic depletion in C. elegans, live imaging of microtubule dynamics Molecular biology of the cell Low 26985017

Source papers

Stage 0 corpus · 7 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2009 X chromosomal variation is associated with slow progression to AIDS in HIV-1-infected women. American journal of human genetics 30 19679225
2023 Cylicins are a structural component of the sperm calyx being indispensable for male fertility in mice and human. eLife 16 38013430
2022 Whole-exome sequencing of Indian prostate cancer reveals a novel therapeutic target: POLQ. Journal of cancer research and clinical oncology 11 35737091
2016 Identification of microtubule growth deceleration and its regulation by conserved and novel proteins. Molecular biology of the cell 8 26985017
2024 Disruption in CYLC1 leads to acrosome detachment, sperm head deformity, and male in/subfertility in humans and mice. eLife 6 38573307
2015 Differential expression of miR-499 and validation of predicted target genes in the testicular tissue of swine at different developmental stages. DNA and cell biology 4 25786081
2025 Novel CYLC1 variants are associated with male infertility due to sperm head deformity. Journal of assisted reproduction and genetics 0 41075067

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