| 2004 |
Keap1 functions as a substrate adaptor protein for a Cul3-dependent E3 ubiquitin ligase complex; Keap1 assembles with Cul3 and Rbx1 to target multiple lysine residues in the Neh2 domain of Nrf2 for ubiquitin conjugation both in vitro and in vivo. Oxidative stress and sulforaphane inhibit Keap1-dependent ubiquitination of Nrf2 by decreasing Keap1-Cul3 association, with Cys151 of Keap1 being critical for this regulatory dissociation. |
In vitro ubiquitination assay, co-immunoprecipitation, site-directed mutagenesis (Keap1 Cys151Ser) |
Molecular and cellular biology |
High |
15367669 15572695
|
| 2004 |
Keap1 acts as an adaptor bridging Nrf2 to Cul3, forming a cytoplasmic E3 ligase complex that polyubiquitinates Nrf2. Inhibition of either Keap1 or Cul3 increases Nrf2 nuclear accumulation, demonstrating that Keap1 restrains Nrf2 via targeting it to the Cul3-based E3 ligase. |
In vitro and in vivo polyubiquitination assays, siRNA knockdown with nuclear localization readout |
Molecular and cellular biology |
High |
15367669
|
| 2003 |
BTB-domain proteins function as substrate-specific adaptors for CUL-3 in an SCF-like E3 ubiquitin ligase, merging the functional properties of Skp1 and F-box proteins into a single polypeptide. The BTB protein MEL-26 directly bridges CUL-3 to the substrate MEI-1/katanin in C. elegans. |
Biochemical reconstitution, genetic epistasis, co-immunoprecipitation, two-hybrid screen |
Nature |
High |
13679921 13679922
|
| 2003 |
Neddylation (Nedd8 conjugation) of CUL-3 is required for its E3 ligase activity toward MEI-1/Katanin in C. elegans; conversely, deneddylation by the COP9 signalosome is also required, indicating that cycles of CUL-3 neddylation/deneddylation are necessary for ligase activity in vivo. |
RNAi-based epistasis, biochemical fractionation, in vivo neddylation assays |
Current biology |
High |
12781129
|
| 2009 |
SPOP (a MATH-BTB protein) recruits substrates via a defined SPOP-binding consensus (SBC) to a dimeric Cul3-SPOP assembly. A conserved helical structure C-terminal of BTB domains (the '3-box') facilitates Cul3 binding analogously to F-box/SOCS-box motifs in other cullin E3s; SPOP dimerization and conformational flexibility enable avid engagement of multiple SBCs within substrates. |
Crystal structure determination, SAXS, biochemical binding assays, mutagenesis |
Molecular cell |
High |
19818708
|
| 2013 |
Crystal structures of KLHL11 BTB-BACK domains in complex with the Cul3 N-terminal domain reveal that Cul3 interaction depends on a unique N-terminal extension sequence of the BTB protein that packs against the 3-box in a hydrophobic groove between BTB and BACK domains; deletion of this N-terminal region causes a 30-fold loss in Cul3 binding affinity. |
X-ray crystallography, biophysical binding assays (ITC/SPR), deletion mutagenesis |
The Journal of biological chemistry |
High |
23349464
|
| 2007 |
A Cul3-based E3 ligase in complex with BTB-Kelch adaptors KLHL9 and KLHL13 ubiquitylates Aurora B, removing it from mitotic chromosomes and allowing its accumulation on the central spindle during anaphase, which is required for correct chromosome alignment, midzone/midbody formation, and cytokinesis completion. |
Co-immunoprecipitation, in vitro reconstituted ubiquitination assay, RNAi knockdown with mitotic phenotype readout |
Developmental cell |
High |
17543862
|
| 2009 |
The Cul3-KLHL21 E3 ubiquitin ligase directly binds Aurora B through KLHL21, mediates Aurora B ubiquitination in vitro, and regulates translocation of the chromosomal passenger complex from chromosomes to the spindle midzone in anaphase, which is required for cytokinesis; KLHL21 localizes to midzone microtubules in anaphase and recruits Aurora B and Cul3 to this region. |
Co-immunoprecipitation, in vitro ubiquitination assay, siRNA knockdown with cytokinesis and CPC localization readout |
The Journal of cell biology |
High |
19995937
|
| 2015 |
Cul3-KLHL20 ubiquitin ligase promotes proteasomal degradation of ULK1 (following ULK1 autophosphorylation-mediated KLHL20 recruitment) and also controls turnover of ATG13, VPS34, Beclin-1, and ATG14, thereby terminating autophagy. Impairment of this regulation potentiates starvation-induced cell death and exacerbates diabetes-associated muscle atrophy. |
Co-immunoprecipitation, in vivo ubiquitination assay, KLHL20 knockdown/knockout with autophagy flux readouts, mouse models |
Molecular cell |
High |
26687681
|
| 2013 |
The CUL3-KLHL3 E3 ligase complex ubiquitylates WNK kinase isoforms in vitro and controls their protein levels in cells; disease-causing mutations in KLHL3 (13/15 dominant mutations) or WNK4 (Gordon's syndrome mutations) disrupt the KLHL3-WNK or KLHL3-Cul3 interactions respectively, explaining the pathological accumulation of WNK kinases in familial hyperkalemic hypertension. |
Immunoprecipitation, in vitro ubiquitination with recombinant complex, siRNA knockdown, site-directed mutagenesis |
The Biochemical journal |
High |
23387299
|
| 2014 |
Cul3-KLHL20 E3 ligase catalyzes K33-linked (non-degradative) polyubiquitination on coronin 7 (Crn7), facilitating Crn7 targeting to the trans-Golgi network (TGN) through a ubiquitin-dependent interaction with Eps15, promoting TGN-pool F-actin assembly and post-Golgi trafficking. |
In vivo ubiquitination assays with chain-specific analysis, localization studies, dominant-negative constructs, siRNA knockdown |
Molecular cell |
High |
24768539
|
| 2005 |
Neddylation of Cul3 renders it unstable, while COP9 signalosome (CSN) deneddylation recycles neddylated, unstable cullins into stable, unneddylated forms; in cells deficient for CSN isopeptidase activity, Cul3 protein is unstable, demonstrating that CSN deneddylation is required to maintain normal Cul3 protein levels. |
Genetic loss-of-function (CSN mutants), immunoblot for neddylation status and protein stability, unneddylatable mutant analysis |
Nature cell biology |
High |
16127432
|
| 2008 |
Covalent modification of Keap1 Cys151 by the model electrophile IAB causes progressive loss of Keap1 secondary structure and dissociation from Cul3 in vitro; in cells, Cys151 is one of the most reactive residues and is required for IAB-mediated dissociation of the Keap1-Cul3 interaction, establishing Cys151 as the critical alkylation sensor. |
CD spectroscopy, in vitro binding assay with recombinant proteins, quantitative mass spectrometry-based kinetic adduction analysis, site-directed mutagenesis |
Chemical research in toxicology |
High |
18251510
|
| 2006 |
SPOP functions as a BTB adaptor for Cul3-based ubiquitin ligase to ubiquitinate and degrade Daxx, regulating Daxx-mediated transcriptional repression and apoptosis. |
Co-immunoprecipitation, ubiquitination assay, shRNA knockdown, functional transcription assays, apoptosis assays |
The Journal of biological chemistry |
High |
16524876
|
| 2009 |
The MATH-BTB protein HIB/SPOP recognizes multiple Ser/Thr-rich degron motifs in Ci/Gli that bind cooperatively; both HIB/SPOP and Ci form dimers/oligomers and engage in multivalent interactions, underlying cooperative in vivo degradation by the Cul3-HIB/SPOP E3 ligase. |
Binding assays, mutagenesis, genetic epistasis in Drosophila, in vivo ubiquitination |
Proceedings of the National Academy of Sciences of the United States of America |
High |
19955409
|
| 2007 |
Cul3 is required for constitutive turnover of cyclin E; biallelic loss of Cul3 in primary fibroblasts causes increased cyclin E expression and reduced cell viability, while Cul3 deletion in mouse liver causes dramatic increases in cyclin E levels, cell size, and ploidy, establishing Cul3-mediated cyclin E degradation as essential for maintaining cellular quiescence. |
Conditional Cul3 knockout mouse, cyclin E immunoblot, cell cycle analysis, liver histology |
Molecular and cellular biology |
High |
17339333
|
| 2004 |
RhoBTB2 binds to the Cul3 ubiquitin ligase scaffold via its first BTB domain and is a substrate of the Cul3-based ubiquitin ligase complex both in vitro and in vivo; a cancer-associated missense mutant of RhoBTB2 fails to bind Cul3 and escapes ubiquitin/proteasome-mediated regulation, resulting in increased protein levels. |
Co-immunoprecipitation, in vitro and in vivo ubiquitination assays, mutagenesis |
Genes & development |
High |
15107402
|
| 2009 |
The human DCNL3 protein (a Dcn1-like protein) promotes Cul3 neddylation at the plasma membrane; DCNL3 accumulates at the plasma membrane through a lipid-modified N-terminal motif, recruits Cul3 to membranes, and is functionally important for Cul3 neddylation in vivo. |
RNAi knockdown with neddylation readout, subcellular fractionation/localization, yeast complementation, dominant-negative Cul3 mutant |
Proceedings of the National Academy of Sciences of the United States of America |
High |
19617556
|
| 2006 |
Actinfilin, a BTB-Kelch protein, acts as a Cul3 substrate adaptor linking the kainate receptor subunit GluR6 to the Cul3 E3 ubiquitin ligase complex via the Kelch repeat domain, promoting GluR6 ubiquitination and degradation; Cul3-deficient neurons show elevated synaptic GluR6 levels. |
Co-immunoprecipitation, ubiquitination assay, domain mapping, RNAi, dominant-negative Cul3 in hippocampal neurons |
The Journal of biological chemistry |
High |
17062563
|
| 2006 |
The BTB-Kelch protein KEL-8 is a substrate receptor for CUL-3-dependent ubiquitin ligase that is required for ubiquitin-mediated turnover of the AMPA-type glutamate receptor subunit GLR-1 at postsynaptic clusters in C. elegans neurons. |
Genetic screen, co-immunoprecipitation, in vivo ubiquitination, behavioral assays |
Molecular biology of the cell |
High |
16394099
|
| 2015 |
CUL3-KBTBD6/KBTBD7 ubiquitin ligase complex ubiquitylates and promotes proteasomal degradation of TIAM1 (a RAC1-specific GEF), spatially restricting RAC1 signaling; KBTBD6 and KBTBD7 use ATG8 family-interacting motifs to bind GABARAP proteins, and TIAM1 degradation by this complex depends on GABARAP binding, linking membrane-localized GABARAP scaffolds to Cul3 activity. |
Co-immunoprecipitation, in vivo ubiquitination, siRNA knockdown with RAC1 activity and actin morphology readouts, proximity ligation assay |
Molecular cell |
High |
25684205
|
| 2009 |
Prothymosin-alpha mediates nuclear import of the INrf2(Keap1)/Cul3/Rbx1 complex; once inside the nucleus, the complex exchanges prothymosin-alpha for Nrf2, resulting in nuclear Nrf2 ubiquitination and degradation, providing a mechanism to rapidly switch off Nrf2-dependent gene expression. |
Co-immunoprecipitation, subcellular fractionation, nuclear import assays, siRNA knockdown |
The Journal of biological chemistry |
Medium |
19279002
|
| 2008 |
PIPKIIbeta and SPOP interact and co-localize at nuclear speckles; SPOP mediates ubiquitylation of PIPKIIbeta by Cul3. Stimulation of the p38 MAPK pathway enhances Cul3-SPOP ubiquitin ligase activity toward multiple substrates; a kinase-dead PIPKIIbeta mutant that increases phosphatidylinositol 5-phosphate levels similarly stimulates Cul3-SPOP activity through p38-dependent signaling. |
Yeast two-hybrid, co-immunoprecipitation, ubiquitination assay, p38 pathway pharmacological inhibition |
The Journal of biological chemistry |
Medium |
18218622
|
| 2009 |
The Cul3-KLHL18 E3 ligase ubiquitylates Aurora-A, and depletion of Cul3 or KLHL18 causes a delay in mitotic entry with delayed centrosomal activation of Aurora-A; the CUL3-KLHL18-ROC1 complex ubiquitylates Aurora-A in vitro. |
Co-immunoprecipitation, in vitro ubiquitination assay, siRNA knockdown with mitotic entry timing readout |
Biology open |
Medium |
23213400
|
| 2019 |
Cul3-Klhl18 ubiquitin ligase promotes ubiquitination and degradation of Unc119, a rod transducin α-subunit (Tα)-interacting protein; Klhl18 preferentially recognizes casein kinase 2-phosphorylated Unc119, which is dephosphorylated by Ca2+-dependent calcineurin, linking Ca2+ signaling to Cul3-Klhl18 activity and modulating rod Tα translocation during light/dark adaptation. |
Klhl18 knockout mouse, in vivo ubiquitination assay, co-immunoprecipitation, calcineurin inhibitor treatment, photoreceptor localization studies |
The EMBO journal |
High |
31696965
|
| 2009 |
Modification of Keap1 Cys151 to bulkier amino acids (e.g., Trp) decreases Keap1 affinity for Cul3, abolishes Cul3-mediated Nrf2 ubiquitination, and activates ARE-driven gene expression; a systematic mutagenesis series shows that the extent of ARE activation correlates with the partial molar volume of the residue at position 151, suggesting steric clashes disrupt the Keap1-Cul3 interaction. |
In vitro ubiquitination assay, site-directed mutagenesis (12-residue series), ARE reporter assay, Cul3 binding assay |
The Biochemical journal |
High |
19489739
|
| 2005 |
Keap1 itself is ubiquitinated by the Cul3-dependent complex; oxidative stress increases Keap1 ubiquitination and decreases Keap1 steady-state levels through a proteasome-independent (non-26S) degradation pathway, representing a regulatory switch from substrate to substrate adaptor ubiquitination. |
In vivo ubiquitination assay, proteasome inhibitor treatment, pulse-chase stability assay |
The Journal of biological chemistry |
Medium |
15983046
|
| 2017 |
p97 segregase, with cofactors UFD1/NPL4 and UBXN7, extracts ubiquitylated NRF2 from the KEAP1-CUL3 E3 complex for efficient delivery to the proteasome; this establishes p97 as an essential component downstream of CUL3-mediated NRF2 ubiquitination in the canonical degradation pathway. |
Co-immunoprecipitation, siRNA knockdown, pharmacological p97 inhibition, immunofluorescence |
Molecular and cellular biology |
Medium |
28115426
|
| 2009 |
KLHL7 forms a dimer, assembles with Cul3 through its BTB and BACK domains, and mediates K48-linked polyubiquitination for proteasomal degradation; a retinitis pigmentosa-causing missense mutation in the BACK domain selectively impairs Cul3 interaction without affecting dimerization, and when incorporated as a heterodimer reduces overall E3 ligase activity in a dominant-negative manner. |
Co-immunoprecipitation, in vivo ubiquitination assay, dimerization assays, domain mapping, mutagenesis |
The Journal of biological chemistry |
Medium |
21828050
|
| 2008 |
BTB protein KLHL12 binds the polymorphic third intracellular loop of the dopamine D4 receptor through its Kelch domain and also interacts with Cullin3, functioning as an adaptor to target the D4 receptor to a Cul3-based E3 ubiquitin ligase complex for ubiquitination. |
Co-immunoprecipitation, ubiquitination assay, domain mapping |
The Journal of biological chemistry |
Medium |
18303015
|
| 2009 |
The Cul3/KLHDC5 (Ctb9) E3 ligase complex ubiquitinates and degrades the microtubule-severing protein p60/katanin in mammalian cells; cells deficient for Cul3 or KLHDC5 show increased p60/katanin levels, microtubule density abnormalities, and mitotic defects including persistent microtubule bridges. |
Two-hybrid screen, co-immunoprecipitation, in vivo ubiquitination assay, overexpression and knockdown with microtubule phenotype readout |
The Journal of biological chemistry |
Medium |
19261606
|
| 2011 |
BRMS1 (breast cancer metastasis suppressor 1) is ubiquitinated and destabilized by the Cul3-SPOP E3 ubiquitin ligase complex, with SPOP serving as the adaptor protein; SPOP knockdown increases BRMS1 protein levels and represses expression of BRMS1 target genes. |
Co-immunoprecipitation, ubiquitination assay, siRNA knockdown, target gene expression analysis |
Biochemical and biophysical research communications |
Medium |
22085717
|
| 2009 |
HSF2 PEST sequences interact directly with Cul3, recruiting HSF2 to the Cul3-RING E3 ubiquitin ligase for ubiquitination and degradation; this identifies PEST-sequence-mediated direct interaction with Cul3 (rather than via a BTB adaptor) as a mechanism for substrate recruitment. |
Co-immunoprecipitation, in vivo ubiquitination assay, domain mapping |
Cell stress & chaperones |
Medium |
19768582
|
| 2014 |
In Drosophila, the CUL3/RDX E3 ligase ubiquitylates CENP-A in a CAL1-dependent manner; however, this ubiquitylation does not trigger CENP-A degradation but instead stabilizes CENP-A and CAL1 at centromeres; loss of RDX leads to rapid degradation of CENP-A and CAL1 and chromosome segregation defects. |
Co-immunoprecipitation, in vivo ubiquitination assay, RNAi knockdown with centromere localization and chromosome segregation readouts |
Developmental cell |
Medium |
24636256
|
| 2019 |
CUL3 interacts with eIF4G1, a cap-dependent translation initiation factor; CUL3 deficiency in neurons leads to accumulation of eIF4G1 and enhanced cap-dependent translation, glutamatergic transmission, and neuronal excitability causing ASD-like behaviors. Pharmacological inhibition of eIF4G1 function rescues these deficits. |
Proteomic analysis, co-immunoprecipitation, conditional Cul3 knockout mouse, electrophysiology, behavioral assays, pharmacological rescue |
Neuron |
Medium |
31780330
|
| 2021 |
CUL3 interacts with BECN1 (Beclin1) via the adaptor KLHL38 and promotes K48-linked polyubiquitination and proteasomal degradation of BECN1, thereby inhibiting autophagy. |
Co-immunoprecipitation, ubiquitination assay with linkage-specific analysis, CHX chase, siRNA knockdown |
Autophagy |
Medium |
33977871
|
| 2021 |
CUL3 controls neuronal migration and cortical lamination by tightly regulating the amount of Plastin3 (Pls3), an actin-bundling protein; Pls3 levels are inversely proportional to neural migration speed and cell-autonomously regulate actin cytoskeleton organization and cell migration. |
Conditional Cul3 haploinsufficiency mouse model, cortical lamination analysis, proteomic identification of Pls3, rescue experiments |
Nature communications |
Medium |
34031387
|
| 2021 |
CUL3-KLHL25 E3 ligase ubiquitinates and degrades ACLY (ATP-citrate lyase) during iTreg differentiation, reducing malonyl-CoA levels and thereby relieving inhibition of CPT1 to facilitate a metabolic shift from fatty acid synthesis to fatty acid oxidation. |
Co-immunoprecipitation, in vivo ubiquitination assay, metabolite measurements, siRNA knockdown with T-cell differentiation readout |
eLife |
Medium |
34491895
|
| 2019 |
KLHL9 and KLHL13 form a Cul3-based E3 ligase complex that ubiquitinates and promotes proteasomal degradation of IRS1, causing insulin resistance when autophagy (ATG16L1) is deficient; knockdown of KLHL9, KLHL13, or Cul3 restores IRS1 expression and insulin signaling. |
BioID proximity proteomics, co-immunoprecipitation, proteasome inhibitor treatment, siRNA knockdown with insulin signaling readout |
The Journal of biological chemistry |
Medium |
31515271
|
| 2001 |
ROC1-CUL3 immunocomplexes promote polyubiquitination of cyclin D1 in vitro; RING finger mutations in ROC1 eliminate E3 ligase activity toward cyclin D1, and ubiquitination is accompanied by autoubiquitination of Cul3. |
In vitro ubiquitination assay, immunoprecipitation, RING finger mutagenesis |
FEBS letters |
Medium |
11311237
|
| 2023 |
Crystal structure of human KEAP1 BTB-3box domains in complex with CUL3 N-terminal domain shows a 2:2 heterotetrameric assembly; the CUL3 N-terminal extension contributes significantly to high-affinity binding; the drug CDDO reduces but does not fully disrupt KEAP1-CUL3 interaction. |
X-ray crystallography, TR-FRET-based binding assay, pharmacological profiling |
Free radical biology & medicine |
High |
37156295
|
| 2017 |
In Drosophila, GCL (Germ cell-less), a conserved BTB protein, acts as a substrate-specific adaptor for CUL3-RING ubiquitin ligase (CRL3GCL) to mediate ubiquitination and degradation of Torso (a receptor tyrosine kinase), promoting germline fate; GCL nuclear envelope release during mitosis provides cell-cycle-dependent spatiotemporal specificity for RTK degradation. |
Genetic epistasis, co-immunoprecipitation, in vivo ubiquitination assay, live imaging for localization |
Developmental cell |
Medium |
28743001
|
| 2021 |
CUL3 loss-of-function variants reduce CUL3 protein stability and impair ubiquitin-protein conjugation; specifically, EIF4EBP1 (4E-BP1) fails to be targeted for proteasomal degradation in patient-derived cells with CUL3 loss-of-function variants, identifying 4E-BP1 as a CUL3 substrate. |
Patient-derived T-cell assays, ubiquitin conjugate measurement, 4E-BP1 stability assay |
Annals of neurology |
Medium |
39301775
|
| 2012 |
Antioxidant-induced phosphorylation of INrf2 (Keap1) Tyr85 controls nuclear export of the INrf2-Cul3-Rbx1 complex; mutation of Tyr85 blocks nuclear export of INrf2 and co-exported Cul3-Rbx1, leading to nuclear accumulation of Nrf2 during the post-induction period. |
Site-directed mutagenesis, subcellular fractionation, co-immunoprecipitation, siRNA knockdown |
Journal of cell science |
Medium |
22448038
|
| 2021 |
CUL3/SPOP complex promotes ubiquitination and proteasomal degradation of PD-L1 protein; overexpression of CUL3 reduces PD-L1 levels and suppresses immune escape of ovarian cancer cells in vitro and in vivo. |
Co-immunoprecipitation, in vivo ubiquitination assay, gain/loss-of-function with PD-L1 protein readout, xenograft mouse model |
Journal for immunotherapy of cancer |
Medium |
36198437
|
| 2021 |
G3BP1 acts as a competitive inhibitor of the Cul3-SPOP E3 ubiquitin ligase by directly binding SPOP, preventing Cul3SPOP from ubiquitinating its substrates including AR pathway components, thereby promoting prostate cancer progression. |
Co-immunoprecipitation, ubiquitination assay, transcriptomic and functional studies |
Nature communications |
Medium |
34795264
|
| 2021 |
Novel CUL3 variant (Δ474-477) causes increased CUL3 autoubiquitination and autodegradation, and the remaining CUL3Δ474-477 shows enhanced NEDD8 modification and increased CUL3-KLHL3 complex formation that is impaired in ubiquitinating WNK4, explaining familial hyperkalemic hypertension pathophysiology. |
Patient-derived cells, in vitro ubiquitination assay, proteomic CUL3 complex analysis, neddylation assays |
Hypertension |
Medium |
34878901
|
| 2020 |
CUL3 directly binds and ubiquitinates β-catenin, promoting its degradation; miR-23a-3p suppresses CUL3 expression, thereby reducing β-catenin ubiquitination and increasing its stability during embryo implantation. |
Co-immunoprecipitation, ubiquitination assay, luciferase reporter, siRNA knockdown |
Journal of molecular endocrinology |
Low |
32716006
|