Affinage

CGNL1

Cingulin-like protein 1 · UniProt Q0VF96

Length
1302 aa
Mass
149.1 kDa
Annotated
2026-06-09
46 papers in source corpus 12 papers cited in narrative 12 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

CGNL1 (paracingulin/JACOP) is a cytoplasmic plaque protein of the apical junctional complex that scaffolds the actomyosin and microtubule cytoskeletons to epithelial and endothelial cell-cell junctions (PMID:15292197). It is recruited to tight junctions and to phase-separated ZO-1 condensates through a direct interaction between CGNL1 and the C-terminal ZU5 domain of ZO-1 (PMID:35259394). From this junctional position CGNL1 mechanically couples the cytoskeleton to the membrane: it binds nonmuscle myosins NM2A and NM2B directly through its C-terminal coiled-coil to promote their junctional accumulation and prevent myosin-dependent fragmentation of adherens junctions (PMID:37204781), tethers CAMSAP3-capped microtubule minus-ends to junctions via a coiled-coil interaction to organize cytoplasmic and planar apical microtubules (PMID:37013686), and directly decorates microtubules through a basic stretch in its head domain (residues 365–377) (PMID:39469042). CGNL1 also functions as a spatial organizer of small-GTPase signaling at forming and mature junctions, forming a complex with the Cdc42/Rac GAP SH3BP1 and CD2AP to spatially restrict Cdc42 activity during junction assembly (PMID:22891260), recruiting MgcRacGAP to control Rac1 activation (PMID:24807907), and acting in a ZO-1→CGNL1→p114RhoGEF axis that organizes junctional myosin II tension in endothelial cells (PMID:25753039). In endothelium it stabilizes VE-cadherin–actin linkage and focal adhesion signaling and is required for vascular tubule formation and postnatal retinal neovascular growth (PMID:29016873), and it governs junctional accumulation of claudin-2 (PMID:37566083). In vivo, CGNL1 couples angiotensin II signaling to tubular sodium transporter (NHE3/NCC) activity in the kidney, with loss of CGNL1 protecting mice from angiotensin II–induced hypertension (PMID:40204428).

Mechanistic history

Synthesis pass · year-by-year structured walk · 12 steps
  1. 2004 Medium

    Established that CGNL1 exists as a distinct cingulin-related junctional plaque protein, defining its baseline localization and candidate cytoskeletal-anchoring role.

    Evidence Monoclonal antibody cloning, immunofluorescence, immunoelectron microscopy and overexpression in epithelial/endothelial cells and fibroblasts

    PMID:15292197

    Open questions at the time
    • No direct binding partners identified
    • Anchoring function inferred from overexpression, not loss-of-function
    • No molecular mechanism of recruitment
  2. 2012 High

    Resolved how CGNL1 contributes to junction assembly by placing it in a complex that spatially confines Cdc42 activity during membrane remodeling.

    Evidence siRNA screen, reciprocal co-immunoprecipitation, depletion/rescue and junction assembly assays in epithelial cells

    PMID:22891260

    Open questions at the time
    • Direct vs indirect binding within the CGNL1–SH3BP1–CD2AP complex not fully delineated
    • How the complex senses sites of active remodeling unknown
  3. 2014 High

    Extended CGNL1's GTPase-regulatory role to Rac1 by showing it recruits MgcRacGAP, while revealing a compensatory expression relationship with cingulin.

    Evidence siRNA knockdown, in vitro direct interaction, co-IP, Rac1 activation and TER assays

    PMID:24807907

    Open questions at the time
    • Mechanism coupling MgcRacGAP recruitment to Rac1 dynamics not detailed
    • Basis of co-regulation of MgcRacGAP expression unresolved
  4. 2015 Medium

    Defined a directional endothelial signaling axis (ZO-1→CGNL1→p114RhoGEF) controlling junctional myosin II tension and mechanotransduction.

    Evidence siRNA depletion, FRET tension sensors, immunofluorescence and rescue in endothelial cells

    PMID:25753039

    Open questions at the time
    • Direct CGNL1–p114RhoGEF binding not biochemically established here
    • Single lab
    • RhoA activation step inferred from phenotype
  5. 2017 Medium

    Demonstrated an in vivo angiogenic requirement for CGNL1, linking it to VE-cadherin–actin coupling and focal adhesion signaling.

    Evidence 3D co-culture loss-of-function, immunofluorescence, biochemical co-association and postnatal retinal vascular model

    PMID:29016873

    Open questions at the time
    • Direct molecular partners at adherens junctions/focal adhesions not mapped
    • Mechanism linking junctional and focal-adhesion roles unclear
  6. 2022 High

    Identified the molecular basis of CGNL1 junctional recruitment via direct binding to the ZO-1 ZU5 domain and to ZO-1 phase-separated condensates.

    Evidence GST pulldown, FRAP, structured illumination microscopy in KO cell lines

    PMID:35259394

    Open questions at the time
    • Functional consequence of condensate partitioning not fully resolved
    • Whether other recruitment routes exist not addressed
  7. 2023 High

    Established CGNL1 as a direct actomyosin coupler at junctions by mapping NM2A/NM2B binding to its C-terminal coiled-coil and showing myosin-dependent junction fragmentation upon loss.

    Evidence In vitro direct binding with domain mutagenesis, KO/rescue, immunofluorescence and atomic force microscopy

    PMID:37204781

    Open questions at the time
    • Force regulation dynamics not quantified
    • Interplay with the RhoGEF/GAP modules not integrated
  8. 2023 High

    Defined CGNL1 as a microtubule-tethering scaffold by mapping a direct coiled-coil interaction with CAMSAP3 that anchors minus-ends and organizes apical microtubule architecture.

    Evidence KO mouse and cell models, GST pulldown, ultrastructure expansion microscopy

    PMID:37013686

    Open questions at the time
    • How microtubule and actomyosin functions are coordinated unknown
    • Tissue-specific consequences beyond intestine not explored
  9. 2023 Medium

    Showed CGNL1 (with cingulin) governs claudin-2 junctional accumulation but is dispensable for overall barrier integrity, refining its role in junction composition.

    Evidence CRISPR KO, TER and dextran permeability, immunofluorescence and rescue in MDCK cells

    PMID:37566083

    Open questions at the time
    • Mechanism linking CGNL1 to claudin-2 localization unknown
    • Redundancy with cingulin not fully separated
  10. 2024 Medium

    Demonstrated a direct, autonomous microtubule-binding activity of CGNL1 independent of CAMSAP3, localized to a basic stretch in the head domain.

    Evidence Negative-stain EM, microtubule co-pelleting with recombinant fragments and deletion mutagenesis

    PMID:39469042

    Open questions at the time
    • Cellular significance of direct microtubule binding vs CAMSAP3 tethering not resolved
    • Single in vitro study
  11. 2025 Medium

    Connected CGNL1 to organ-level physiology by showing it couples angiotensin II signaling to renal tubular sodium transport and blood pressure control.

    Evidence CGNL1 KO mouse, blood pressure measurement, immunolocalization, transcriptomics, immunoblot and myography

    PMID:40204428

    Open questions at the time
    • Direct molecular link between CGNL1 and NHE3/NCC regulation unknown
    • Whether junctional scaffolding functions underlie the renal phenotype unclear
  12. 2026 Low

    Implicated CGNL1 as a modulator of epithelial susceptibility to aflatoxin-induced oxidative stress and immune gene responses.

    Evidence CRISPR KO in porcine IPEC-J2 cells, viability, ROS and RNA-seq

    PMID:42123512

    Open questions at the time
    • Limited mechanistic placement of CGNL1 in oxidative-stress pathways
    • Single lab, non-human cell line
    • No direct molecular target identified

Open questions

Synthesis pass · forward-looking unresolved questions
  • How CGNL1 integrates its parallel actomyosin coupling, microtubule tethering, and small-GTPase regulatory modules into a unified, spatially coordinated program of junction mechanoregulation remains unresolved.
  • No structure of full-length CGNL1 or its multivalent assemblies
  • Hierarchy and crosstalk among ZO-1, myosin, CAMSAP3 and GTPase modules not established
  • Direct molecular link to renal ion-transport phenotype unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 5 GO:0008092 cytoskeletal protein binding 3 GO:0098772 molecular function regulator activity 3
Localization
GO:0005856 cytoskeleton 2 GO:0005829 cytosol 1
Pathway
R-HSA-162582 Signal Transduction 4 R-HSA-1500931 Cell-Cell communication 3 R-HSA-1266738 Developmental Biology 1
Complex memberships
CGNL1–SH3BP1–CD2AP complextight junction cytoplasmic plaque

Evidence

Reading pass · 12 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2004 JACOP (CGNL1) is a novel cytoplasmic plaque protein that localizes to the apical junctional complex in epithelial and endothelial cells. It contains a coiled-coil domain with sequence similarity to cingulin. Overexpression studies showed it is recruited to the junctional complex in epithelial cells and to cell-cell contacts and stress fibers in fibroblasts, suggesting a role in anchoring the apical junctional complex (especially tight junctions) to actin-based cytoskeletons. Monoclonal antibody cloning, immunofluorescence, immunoelectron microscopy, overexpression studies The Journal of biological chemistry Medium 15292197
2012 JACOP/paracingulin (CGNL1) forms a complex with SH3BP1 (a Cdc42/Rac GAP) and CD2AP (a scaffolding protein) at sites of active membrane remodeling during junction formation. Both JACOP and CD2AP were required for normal Cdc42 signaling and junction formation. Depletion of SH3BP1 resulted in loss of spatial control of Cdc42 activity and stalled membrane remodeling. siRNA screen, co-immunoprecipitation, depletion/rescue experiments, immunofluorescence, functional junction assembly assays The Journal of cell biology High 22891260
2014 CGNL1 (paracingulin) depletion inhibits Rac1 activation during junction assembly. MgcRacGAP colocalizes with CGN and CGNL1 at tight junctions, forms a complex with them, and interacts directly in vitro with both. Depletion of either CGN or CGNL1 results in decreased junctional localization of MgcRacGAP. Unexpectedly, double knockdown of both CGN and CGNL1 restores normal Rac1 activation because MgcRacGAP expression is also decreased, and exogenous MgcRacGAP rescues barrier and Rac1 activation phenotypes. siRNA knockdown, in vitro direct interaction assay, co-immunoprecipitation, immunofluorescence, Rac1 activation assays, transepithelial resistance measurements Molecular biology of the cell High 24807907
2015 In endothelial cells, ZO-1 is required for junctional recruitment of JACOP (CGNL1), which in turn recruits p114RhoGEF. Downregulation of JAM-A, JACOP, or p114RhoGEF phenocopied ZO-1 effects on mechanotransducers (redistribution of active myosin II, loss of junctional vinculin and PAK2), establishing a ZO-1→JACOP→p114RhoGEF signaling axis at endothelial junctions. siRNA depletion, immunofluorescence, FRET-based tension sensors, rescue experiments The Journal of cell biology Medium 25753039
2017 Cgnl1 is enriched in endothelial cells during vascular growth and is required for multicellular tubule formation. Cgnl1 promotes Ve-cadherin association with the actin cytoskeleton to stabilize adherens junctions, and regulates focal adhesion assembly by promoting vinculin and paxillin recruitment and focal adhesion kinase signaling. In vivo, Cgnl1 is required for postnatal retinal neovascular growth and stability. Loss-of-function assays (3D co-culture), immunofluorescence, in vivo postnatal retinal vascular model, biochemical co-association assays Cardiovascular research Medium 29016873
2022 CGNL1 (paracingulin) binds to the C-terminal ZU5 domain of ZO-1, and this interaction is required for CGNL1 recruitment to tight junctions and to phase-separated ZO-1 condensates. Knockout of CGNL1 (unlike CGN KO) does not significantly decrease ZO-1 accumulation at tight junctions. GST pulldown, immunofluorescence microscopy, FRAP, structured illumination microscopy, KO cell lines The Journal of biological chemistry High 35259394
2023 CGNL1 (paracingulin) interacts directly with nonmuscle myosins NM2A and NM2B through its C-terminal coiled-coil sequences. CGNL1 knockout results in myosin-dependent fragmentation of adherens junction complexes. CGNL1 expression promotes junctional accumulation of both NM2A and NM2B, indicating CGNL1 mechanically couples the actomyosin cytoskeleton to junctional protein complexes to mechanoregulate the plasma membrane. In vitro direct binding assays, KO and rescue experiments with WT and mutant proteins, immunofluorescence, atomic force microscopy The Journal of cell biology High 37204781
2023 CGNL1 (paracingulin) recruits CAMSAP3 (a microtubule minus-end-binding protein) to tight junctions through a direct interaction mediated by their respective coiled-coil regions. KO of CGNL1 causes loss of junctional CAMSAP3, disorganized cytoplasmic microtubules, irregular nuclei alignment in intestinal epithelial cells, altered cyst morphogenesis, and disrupted planar apical microtubules. The ZO-1-associated pool of CGNL1 tethers CAMSAP3-capped microtubules to junctions. KO mouse model, KO cultured cells, GST pulldown, ultrastructure expansion microscopy, immunofluorescence Journal of cell science High 37013686
2023 KO of CGN or CGNL1 or both in MDCK cells causes modest but significant increase in transepithelial resistance and decreased junctional accumulation of claudin-2, which is rescued by CGN or CGNL1 overexpression but not by ZO-1 overexpression. This indicates CGN and CGNL1 regulate claudin-2 junctional localization but are dispensable for overall epithelial barrier function. CRISPR KO, transepithelial resistance measurements, dextran permeability assays, immunofluorescence, Western blot, mRNA quantification, rescue overexpression Cells Medium 37566083
2024 Recombinant purified CGNL1 (paracingulin) decorates microtubules and co-pellets with microtubules in vitro. This interaction is mediated by a central region of the CGNL1 head domain (residues 250–420), and deletion of a basic amino-acid stretch (residues 365–377) within this region abolishes both co-pelleting with and decoration of microtubules. Negative staining electron microscopy, microtubule co-pelleting assay, recombinant protein fragments, deletion mutagenesis microPublication biology Medium 39469042
2025 CGNL1 KO mice do not develop hypertension under a unilateral nephrectomy + angiotensin II (N+A) protocol that induces hypertension in WT mice. CGNL1 is expressed in kidney tubules and endothelium. CGNL1 KO blunts N+A-induced changes in tubular ion transporters (NHE3 and NCC expression/activation) and in angiotensin II-dependent changes in AMPK, ERK, and myosin light chain levels/activation, without affecting vascular contractility. This indicates CGNL1 couples angiotensin II signaling to sodium transport in kidney tubules. CGNL1 KO mouse model, blood pressure measurement, immunolocalization, transcriptomics, immunoblot, myography American journal of physiology. Renal physiology Medium 40204428
2026 CRISPR KO of CGNL1 in porcine intestinal epithelial cells (IPEC-J2) markedly alleviates AFB1-induced cytotoxicity and oxidative stress, and attenuates AFB1-triggered aberrant expression of immune response genes. This identifies CGNL1 as a modulator of epithelial susceptibility to AFB1-induced oxidative stress. CRISPR/Cas9 KO, cell viability assays, ROS measurement, RNA-seq transcriptomics International journal of molecular sciences Low 42123512

Source papers

Stage 0 corpus · 46 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2006 A guided tour into subcellular colocalization analysis in light microscopy. Journal of microscopy 4244 17210054
2015 ZO-1 controls endothelial adherens junctions, cell-cell tension, angiogenesis, and barrier formation. The Journal of cell biology 455 25753039
2007 MyHits: improvements to an interactive resource for analyzing protein sequences. Nucleic acids research 167 17545200
2014 Epithelial junctions and Rho family GTPases: the zonular signalosome. Small GTPases 146 25483301
2008 Variation in neural V1aR predicts sexual fidelity and space use among male prairie voles in semi-natural settings. Proceedings of the National Academy of Sciences of the United States of America 107 18212120
2014 The interdependence of the Rho GTPases and apicobasal cell polarity. Small GTPases 98 25469537
2013 CNV analysis in a large schizophrenia sample implicates deletions at 16p12.1 and SLC1A1 and duplications at 1p36.33 and CGNL1. Human molecular genetics 73 24163246
2004 JACOP, a novel plaque protein localizing at the apical junctional complex with sequence similarity to cingulin. The Journal of biological chemistry 71 15292197
2012 Epithelial junction formation requires confinement of Cdc42 activity by a novel SH3BP1 complex. The Journal of cell biology 66 22891260
2021 The blood-brain and gut-vascular barriers: from the perspective of claudins. Tissue barriers 65 34152937
2016 Functional Specialty of CD40 and Dendritic Cell Surface Lectins for Exogenous Antigen Presentation to CD8(+) and CD4(+) T Cells. EBioMedicine 53 27077111
2007 Regional rearrangements in chromosome 15q21 cause formation of cryptic promoters for the CYP19 (aromatase) gene. Human molecular genetics 50 17584767
2020 The genetic map of diabetic nephropathy: evidence from a systematic review and meta-analysis of genetic association studies. Clinical kidney journal 46 33123356
2014 MgcRacGAP interacts with cingulin and paracingulin to regulate Rac1 activation and development of the tight junction barrier during epithelial junction assembly. Molecular biology of the cell 43 24807907
2022 Autoantibody discovery across monogenic, acquired, and COVID-19-associated autoimmunity with scalable PhIP-seq. eLife 42 36300623
2016 Virus-encoded microRNA contributes to the molecular profile of EBV-positive Burkitt lymphomas. Oncotarget 38 26325594
2015 The evolutionarily conserved transcription factor PRDM12 controls sensory neuron development and pain perception. Cell cycle (Georgetown, Tex.) 37 25891934
2017 Cgnl1, an endothelial junction complex protein, regulates GTPase mediated angiogenesis. Cardiovascular research 29 29016873
2022 Cingulin binds to the ZU5 domain of scaffolding protein ZO-1 to promote its extended conformation, stabilization, and tight junction accumulation. The Journal of biological chemistry 27 35259394
2023 Cingulin and paracingulin tether myosins-2 to junctions to mechanoregulate the plasma membrane. The Journal of cell biology 24 37204781
2022 Genome Wide Association Study of Beef Traits in Local Alpine Breed Reveals the Diversity of the Pathways Involved and the Role of Time Stratification. Frontiers in genetics 22 35058966
2021 Identification of Tumor Suppressive Genes Regulated by miR-31-5p and miR-31-3p in Head and Neck Squamous Cell Carcinoma. International journal of molecular sciences 21 34201353
2024 Role of a novel circRNA-CGNL1 in regulating pancreatic cancer progression via NUDT4-HDAC4-RUNX2-GAMT-mediated apoptosis. Molecular cancer 19 38297362
2023 Paracingulin recruits CAMSAP3 to tight junctions and regulates microtubule and polarized epithelial cell organization. Journal of cell science 16 37013686
2005 JACOP: a simple and robust method for the automated classification of protein sequences with modular architecture. BMC bioinformatics 16 16135248
2014 MicroRNA-205 targets tight junction-related proteins during urothelial cellular differentiation. Molecular & cellular proteomics : MCP 13 24912853
2024 Histone Lysine Lactylation (Kla)-induced BCAM Promotes OSCC Progression and Cis-Platinum Resistance. Oral diseases 10 39503345
2024 Identification of CGNL1 as a diagnostic marker in fibroblasts of diabetic foot ulcers: Insights from single cell RNA sequencing and bulk sequencing data. International journal of immunopathology and pharmacology 9 39102374
2022 Colocalization Analysis for Cryosectioned and Immunostained Tissue Samples with or without Label Retention Expansion Microscopy (LR-ExM) by JACoP. Bio-protocol 9 35592606
2022 The integrative network of circRNA, miRNA and mRNA of epicardial adipose tissue in patients with atrial fibrillation. American journal of translational research 9 36247236
2021 An Optimized Whole-Mount Immunofluorescence Method for Shoot Apices. Current protocols 8 33826805
2021 Identifying genetic determinants of inflammatory pain in mice using a large-scale gene-targeted screen. Pain 8 35552317
2023 Knock Out of CGN and CGNL1 in MDCK Cells Affects Claudin-2 but Has a Minor Impact on Tight Junction Barrier Function. Cells 6 37566083
2022 Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq. bioRxiv : the preprint server for biology 4 35350199
2025 Transcriptomic Profiling of Lesional and Perilesional Skin in Atopic Dermatitis Suggests Barrier Dysfunction, Inflammatory Activation, and Alterations to Vitamin D Metabolism. International journal of molecular sciences 3 40649943
2023 Integrated analysis of high‑throughput sequencing reveals the regulatory potential of hsa_circ_0035431 in HNSCC. Oncology letters 3 37664656
2025 Development of a Novel Automated Workflow in Fiji ImageJ for Batch Analysis of Confocal Imaging Data to Quantify Protein Colocalization Using Manders Coefficient. Bio-protocol 2 40224655
2025 The knock-out of paracingulin attenuates hypertension through modulation of kidney ion transport. American journal of physiology. Renal physiology 1 40204428
2025 Phylogeography of a dominant desert lizard reveals the synergistic effects of topography and climate dynamics on diversification in arid eastern-Central Asia. Zoological research 1 40259730
2024 Comprehensive Analysis of Crucial m6A-Related Differentially Expressed Genes in Psoriasis. Frontiers in bioscience (Landmark edition) 1 39344312
2022 The exploration of new biomarkers for oral cancer through the ceRNA network and immune microenvironment analysis. Medicine 1 36626444
2026 Mitochondria "Shackled" by Mutant Huntingtin: Analysis of Morphological Alterations and Disruptions of Intracellular Transport. Biochemistry. Biokhimiia 0 41843843
2026 CRISPR/Cas9-Mediated Knockout of CGNL1 Confers Resistance to Aflatoxin B1 in Porcine Intestinal Epithelial Cells via Suppressing ROS Generation. International journal of molecular sciences 0 42123512
2025 Barrier genes are associated with preterm birth. Frontiers in medicine 0 40625359
2025 Subtype-specific RNA sequencing using micro-dissection revealed extracellular matrix alterations as key factors in lung adenocarcinoma invasion. Translational lung cancer research 0 41367576
2024 Evidence for an interaction of paracingulin with microtubules. microPublication biology 0 39469042

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