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Showing RASA4CAPRI is a alias.

RASA4

Ras GTPase-activating protein 4 · UniProt O43374

Length
803 aa
Mass
90.5 kDa
Annotated
2026-06-10
100 papers in source corpus 7 papers cited in narrative 7 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

RASA4 (CAPRI) is a Ca2+-dependent Ras GTPase-activating protein that couples elevated intracellular Ca2+ to inactivation of the Ras-MAPK pathway (PMID:11448776). Following stimuli that raise cytosolic Ca2+, its C2 domain drives fast translocation to the plasma membrane, where it accelerates GTP hydrolysis on Ras (PMID:11448776); sustained recruitment then becomes largely Ca2+-independent and depends on integration of the C2 domains with agonist-evoked PH-domain interaction sites, allowing different Ca2+ stimulus intensities to be converted into different durations of Ras activity (PMID:16009725). Ca2+ at physiological concentrations also drives homodimerization through a C-terminal hydrophobic helix, and this switches catalytic preference: monomeric RASA4 acts more strongly as a RasGAP while the dimer acts more strongly as a RapGAP, coordinating regulation of both Ras and Rap1 (PMID:21460216). In mast cells, this membrane translocation terminates the early phase of ERK2 activation and suppresses antigen-induced degranulation and cytokine production, with a GAP-domain mutant abolishing both translocation and suppression (PMID:16815298). In triple-negative breast cancer cells, Ca2+ influx through TRPC3 sustains plasma-membrane RASA4 to restrain MAPK signaling, proliferation, and apoptosis resistance (PMID:31003514). Isoform-specific promoter hypermethylation silences RASA4 in juvenile myelomonocytic leukemia, consistent with loss of its Ras-suppressive function in disease (PMID:25147919).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 2001 High

    Established RASA4/CAPRI as the molecular link between Ca2+ signals and Ras inactivation, defining how Ca2+ feeds back onto the Ras-MAPK pathway.

    Evidence Live-cell imaging of translocation, in vivo Ras activity assays, and C2 domain mutants

    PMID:11448776

    Open questions at the time
    • Did not resolve how membrane retention is sustained beyond the initial Ca2+ spike
    • Catalytic preference between Ras and Rap not addressed
  2. 2005 High

    Showed RASA4 acts as a low-pass filter that translates Ca2+ stimulus intensity into Ras-activity duration, distinguishing it from oscillation-tracking relatives.

    Evidence FRET-based real-time Ras activity assay, live-cell imaging, and domain mutant analysis of Ca2+-dependent versus PH-dependent recruitment

    PMID:16009725

    Open questions at the time
    • Identity of the agonist-evoked PH-domain membrane interaction sites not defined
    • Whether filtering behavior holds in physiological cell types untested
  3. 2006 Medium

    Demonstrated a cellular consequence of RASA4 action by showing it terminates early ERK2 activation and suppresses mast cell effector responses, tying membrane translocation to function.

    Evidence Overexpression and GAP-domain point mutant (R472S) in RBL mast cells with degranulation, cytokine, ERK2 localization, and Ca2+ readouts

    PMID:16815298

    Open questions at the time
    • Based on overexpression rather than endogenous loss-of-function
    • Single cell line and lab
  4. 2011 High

    Resolved how a single GAP regulates two GTPases by showing Ca2+-driven dimerization switches catalytic preference between RasGAP and RapGAP activity.

    Evidence Reciprocal Co-IP, deletion/point mutagenesis of a C-terminal hydrophobic helix, and in vivo GAP assays for Ras and Rap1 with histamine stimulation

    PMID:21460216

    Open questions at the time
    • No structural model of the dimer interface
    • Downstream consequences of Rap1 regulation not characterized
  5. 2014 Medium

    Connected RASA4 to malignant Ras dysregulation by identifying isoform-specific promoter hypermethylation as a silencing mechanism in JMML.

    Evidence Quantitative mass spectrometry-based DNA methylation profiling in 125 patients with genetic correlations

    PMID:25147919

    Open questions at the time
    • No functional rescue confirming silencing drives Ras activation
    • Causality versus correlation with PTPN11 mutation and monosomy 7 not established
  6. 2019 Medium

    Defined an upstream channel input by showing TRPC3-mediated Ca2+ influx sustains plasma-membrane RASA4 to restrain MAPK-driven proliferation in breast cancer.

    Evidence Subcellular fractionation, immunocytochemistry, TRPC3 pharmacological and dominant-negative inhibition, with proliferation and apoptosis assays

    PMID:31003514

    Open questions at the time
    • Direct molecular link between TRPC3 and RASA4 retention not shown
    • Single cell line
  7. 2021 Medium

    Implicated RASA4 in host-pathogen signaling by linking its upregulation to cytoskeletal and matrix remodeling in periodontal fibroblasts.

    Evidence mRNA quantification and functional assays (actin dynamics, adhesion, MMP-2 activity) on T. denticola/dentilisin-infected primary PDL cells

    PMID:34094999

    Open questions at the time
    • mRNA-level only without protein knockdown rescue
    • GAP activity not directly linked to actin/MMP-2 phenotype

Open questions

Synthesis pass · forward-looking unresolved questions
  • A structural basis for the dimerization-driven RasGAP-to-RapGAP switch and how it is coordinated with Ca2+- and PH-dependent membrane retention across cell types remains undefined.
  • No structure of monomeric versus dimeric RASA4
  • Physiological balance of Ras versus Rap1 regulation in vivo unknown
  • Endogenous loss-of-function phenotypes largely uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 3 GO:0008289 lipid binding 2
Localization
GO:0005886 plasma membrane 4 GO:0005829 cytosol 2
Pathway
R-HSA-162582 Signal Transduction 3
Partners
Complex memberships
RASA4 homodimer

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2001 CAPRI (RASA4) was identified as a Ca2+-dependent Ras GTPase-activating protein (RasGAP) that inactivates the Ras-MAPK pathway following stimuli that elevate intracellular Ca2+. Ca2+ drives a fast C2 domain-dependent translocation of CAPRI to the plasma membrane, constituting the mechanistic basis for Ca2+-promoted Ras inactivation. Live-cell imaging of CAPRI translocation, in vivo Ras activity assays, C2 domain mutant analysis Current Biology High 11448776
2005 CAPRI acts as a low-pass filter for Ca2+ signals: its sustained plasma membrane translocation after stimulation is Ca2+- and C2 domain-dependent but the prolonged recruitment is predominantly Ca2+-independent, requiring integration by the C2 domains with agonist-evoked plasma membrane interaction sites for the pleckstrin homology (PH) domain. This sustained translocation converts different intensities of Ca2+ stimulation into different durations of Ras activity. In contrast, the related protein RASAL tracks Ca2+ oscillations repetitively, preserving frequency information. Real-time Ras activity assay (FRET-based), live-cell fluorescence imaging of translocation dynamics, domain mutant analysis, Ca2+ oscillation experiments The Journal of Cell Biology High 16009725
2011 CAPRI (RASA4) forms homodimers in vitro and in vivo in a Ca2+-dependent manner. Dimerization requires a C-terminal helix motif forming a hydrophobic face. Monomeric CAPRI exhibits stronger RasGAP activity, while dimeric CAPRI exhibits stronger RapGAP activity. Ca2+ at physiologically relevant concentrations is both necessary and sufficient for dimer formation. Cell stimulation with histamine increases the ratio of dimer to monomer. Thus, Ca2+-dependent dimerization switches CAPRI between its dual RasGAP and RapGAP roles. Co-immunoprecipitation, deletion and point mutagenesis, in vivo GAP activity assays for Ras and Rap1, cell stimulation with histamine The Journal of Biological Chemistry High 21460216
2006 In mast cells (RBL cells), CAPRI overexpression suppresses antigen-induced degranulation and cytokine production. Antigen stimulation triggers Ca2+-dependent translocation of CAPRI to the plasma membrane, followed by re-localization to the cytoplasm that is concomitant with nuclear import of ERK2, indicating that CAPRI eliminates the early phase of ERK2 activation. A GAP-domain mutant (R472S) showed impaired plasma membrane translocation and did not suppress degranulation, ERK2 activation, or cytokine production, linking membrane translocation to functional suppression. Overexpression and GAP-domain point mutant (R472S) in RBL mast cells, degranulation assay, cytokine measurement, ERK2 localization imaging, intracellular Ca2+ measurement Biochemical and Biophysical Research Communications Medium 16815298
2019 In triple-negative breast cancer MDA-MB-231 cells, RASA4 localizes to the plasma membrane where it suppresses the Ras-MAPK pathway. Ca2+ influx through the TRPC3 channel sustains RASA4 at the plasma membrane. Blocking TRPC3 decreases plasma membrane-localized RASA4 and concomitantly activates MAPK pathways, promoting proliferation and apoptosis resistance. This defines a TRPC3–RASA4–MAPK signaling cascade. Subcellular fractionation and Western blot, immunocytochemistry, TRPC3 blocker (Pyr3) and dominant-negative TRPC3 overexpression, proliferation assays, apoptosis assays Cancers Medium 31003514
2014 RASA4 isoform 2, which maps to chromosome 7 and encodes a GAP1-family GTPase-activating protein, undergoes recurrent isoform-specific DNA hypermethylation in juvenile myelomonocytic leukemia (JMML), occurring in 51% of 125 patients analyzed. Methylation of the RASA4 isoform 2 promoter correlated with PTPN11 mutation and monosomy 7 (where the remaining allele was hypermethylated), suggesting epigenetic silencing of RASA4 as a mechanism contributing to dysregulated Ras signaling in JMML. Quantitative high-resolution mass spectrometry-based DNA methylation analysis, correlation with clinical/genetic parameters in 125 patients Epigenetics Medium 25147919
2021 In human periodontal ligament (PDL) fibroblasts, infection with Treponema denticola (via its effector protein dentilisin) upregulates RASA4 mRNA expression, which leads to actin depolymerization, loss of cell adhesion, and increased matrix metalloproteinase-2 (MMP-2) activity. This defines a T. denticola–dentilisin→RASA4 upregulation→actin depolymerization/MMP-2 activation pathway in periodontal pathogenesis. Gene expression assays (mRNA quantification), functional cell assays (actin dynamics, cell adhesion, MMP-2 activity), T. denticola infection of primary human PDL cells, dentilisin-specific inhibition Frontiers in Cellular and Infection Microbiology Medium 34094999

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2003 CAPRI: a Critical Assessment of PRedicted Interactions. Proteins 532 12784359
2007 HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets. Proteins 476 17803234
2017 New additions to the ClusPro server motivated by CAPRI. Proteins 466 27936493
2005 Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures. Proteins 286 15981261
2007 Docking and scoring protein complexes: CAPRI 3rd Edition. Proteins 271 17918726
2013 Docking, scoring, and affinity prediction in CAPRI. Proteins 203 24115211
2010 Achieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19. Proteins 198 20818657
2010 Docking and scoring protein interactions: CAPRI 2009. Proteins 188 20806235
2016 Modeling protein-protein and protein-peptide complexes: CAPRI 6th edition. Proteins 170 27865038
2003 Evaluation of protein docking predictions using Hex 3.1 in CAPRI rounds 1 and 2. Proteins 141 12784374
2005 Assessing predictions of protein-protein interaction: the CAPRI experiment. Protein science : a publication of the Protein Society 130 15659362
2015 Heterogeneity of KRAS, NRAS, BRAF and PIK3CA mutations in metastatic colorectal cancer and potential effects on therapy in the CAPRI GOIM trial. Annals of oncology : official journal of the European Society for Medical Oncology 126 25851630
2016 Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment. Proteins 124 27122118
2010 Protein-protein docking tested in blind predictions: the CAPRI experiment. Molecular bioSystems 111 20725658
2004 Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications. Current opinion in structural biology 111 15093840
2021 Combination ATR and PARP Inhibitor (CAPRI): A phase 2 study of ceralasertib plus olaparib in patients with recurrent, platinum-resistant epithelial ovarian cancer. Gynecologic oncology 108 34620496
2020 Modeling protein-protein, protein-peptide, and protein-oligosaccharide complexes: CAPRI 7th edition. Proteins 102 31886916
2019 Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment. Proteins 102 31612567
2021 Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment. Proteins 98 34453465
2014 Clinical activity of FOLFIRI plus cetuximab according to extended gene mutation status by next-generation sequencing: findings from the CAPRI-GOIM trial. Annals of oncology : official journal of the European Society for Medical Oncology 97 24942275
2005 ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5. Proteins 95 15981263
2005 ATTRACT: protein-protein docking in CAPRI using a reduced protein model. Proteins 92 15981270
2001 CAPRI regulates Ca(2+)-dependent inactivation of the Ras-MAPK pathway. Current biology : CB 91 11448776
2003 Protein-protein docking predictions for the CAPRI experiment. Proteins 85 12784377
2017 The challenge of modeling protein assemblies: the CASP12-CAPRI experiment. Proteins 83 29127686
2005 Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility. Proteins 82 15981249
2016 Cetuximab continuation after first progression in metastatic colorectal cancer (CAPRI-GOIM): a randomized phase II trial of FOLFOX plus cetuximab versus FOLFOX. Annals of oncology : official journal of the European Society for Medical Oncology 81 27002107
2023 Combination ATR (ceralasertib) and PARP (olaparib) Inhibitor (CAPRI) Trial in Acquired PARP Inhibitor-Resistant Homologous Recombination-Deficient Ovarian Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 75 37097611
2010 MDockPP: A hierarchical approach for protein-protein docking and its application to CAPRI rounds 15-19. Proteins 73 20635420
2007 ClusPro: performance in CAPRI rounds 6-11 and the new server. Proteins 68 17876812
2005 Data-driven docking: HADDOCK's adventures in CAPRI. Proteins 68 15981252
2003 ZDOCK predictions for the CAPRI challenge. Proteins 68 12784369
2023 Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment. Proteins 67 37905971
2014 Score_set: a CAPRI benchmark for scoring protein complexes. Proteins 66 25179222
2010 Blind predictions of protein interfaces by docking calculations in CAPRI. Proteins 60 20839234
2007 The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI. Proteins 60 17803212
2005 CAPRI and RASAL impose different modes of information processing on Ras due to contrasting temporal filtering of Ca2+. The Journal of cell biology 58 16009725
2019 TRPC3 Regulates the Proliferation and Apoptosis Resistance of Triple Negative Breast Cancer Cells through the TRPC3/RASA4/MAPK Pathway. Cancers 52 31003514
2005 CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock. Proteins 52 15981262
2015 CAPRI: efficient inference of cancer progression models from cross-sectional data. Bioinformatics (Oxford, England) 49 25971740
2013 Blind prediction of interfacial water positions in CAPRI. Proteins 47 24155158
2010 A generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13-19. Proteins 45 20535822
2019 CAPRI enables comparison of evolutionarily conserved RNA interacting regions. Nature communications 44 31213602
2005 Improving CAPRI predictions: optimized desolvation for rigid-body docking. Proteins 43 15981266
2011 Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective. BMC genomics 41 21324191
2007 Protein-protein docking in CAPRI using ATTRACT to account for global and local flexibility. Proteins 39 17803217
2014 RASA4 undergoes DNA hypermethylation in resistant juvenile myelomonocytic leukemia. Epigenetics 34 25147919
2007 The third CAPRI assessment meeting Toronto, Canada, April 20-21, 2007. Structure (London, England : 1993) 34 17637336
2007 Comparative efficacy of an indigenous 'inactivated vaccine' using highly pathogenic field strain of Mycobacterium avium subspecies paratuberculosis 'Bison type' with a commercial vaccine for the control of Capri-paratuberculosis in India. Vaccine 34 17804124
1999 Genetic and serological analysis of lipoprotein LppA in Mycoplasma mycoides subsp. mycoides LC and Mycoplasma mycoides subsp. capri. Clinical and diagnostic laboratory immunology 34 10066658
2005 Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI. Proteins 33 15981271
1978 Relationships between strains of Mycoplasma mycoides subspp. mycoides and capri studied by two-dimensional gel electrophoresis of cell proteins. Journal of general microbiology 33 370343
2024 CAPRI-Q: The CAPRI resource evaluating the quality of predicted structures of protein complexes. Journal of molecular biology 32 39237205
2005 Performance of the first protein docking server ClusPro in CAPRI rounds 3-5. Proteins 31 15981265
2007 RosettaDock in CAPRI rounds 6-12. Proteins 28 17671979
2005 Modeling side-chains using molecular dynamics improve recognition of binding region in CAPRI targets. Proteins 28 15981253
2010 Optimization of pyDock for the new CAPRI challenges: Docking of homology-based models, domain-domain assembly and protein-RNA binding. Proteins 27 20602351
2005 Modeling oligomers with Cn or Dn symmetry: application to CAPRI target 10. Proteins 27 15981250
2016 Lessons from (co-)evolution in the docking of proteins and peptides for CAPRI Rounds 28-35. Proteins 26 27701780
2007 Impact of interferon-alpha in combined chemoradioimmunotherapy for pancreatic adenocarcinoma (CapRI): first data from the immunomonitoring. Journal of immunotherapy (Hagerstown, Md. : 1997) 26 17198089
2010 The targets of CAPRI Rounds 13-19. Proteins 25 20589643
1989 Relationship between Mycoplasma mycoides subsp. mycoides ('large-colony' strains) and M. mycoides subsp. capri, as indicated by numerical analysis of one-dimensional SDS-PAGE protein patterns. Journal of general microbiology 25 2693591
2013 Performance of ZDOCK in CAPRI rounds 20-26. Proteins 24 24123140
2024 Comprehensive genomic profiling by liquid biopsy captures tumor heterogeneity and identifies cancer vulnerabilities in patients with RAS/BRAFV600E wild-type metastatic colorectal cancer in the CAPRI 2-GOIM trial. Annals of oncology : official journal of the European Society for Medical Oncology 23 39214459
1982 The nucleotide sequence of the 5S rRNA from Spiroplasma species BC3 and Mycoplasma mycoides sp. capri PG3. Nucleic acids research 23 6757862
1975 Modification of the membrane composition of Mycoplasma mycoides subsp. capri by the growth medium. Journal of general microbiology 23 1097587
2013 Using a consensus approach based on the conservation of inter-residue contacts to rank CAPRI models. Proteins 22 24115176
2003 Evaluation of the 3D-Dock protein docking suite in rounds 1 and 2 of the CAPRI blind trial. Proteins 22 12784370
2017 FlexPepDock lessons from CAPRI peptide-protein rounds and suggested new criteria for assessment of model quality and utility. Proteins 21 28002624
2006 Immunomodulatory impact of interferon-alpha in combination with chemoradiation of pancreatic adenocarcinoma (CapRI). Cancer immunology, immunotherapy : CII 21 16485127
2005 The targets of CAPRI rounds 3-5. Proteins 21 15981267
1991 The peptides APLHK, EHIPA and GAPL are hydropathically equivalent peptide mimics of a fibrinogen binding domain of glycoprotein IIb/IIIa. Biochemical and biophysical research communications 21 1953789
2017 Improved performance in CAPRI round 37 using LZerD docking and template-based modeling with combined scoring functions. Proteins 20 28845596
2013 Inclusion of the orientational entropic effect and low-resolution experimental information for protein-protein docking in Critical Assessment of PRedicted Interactions (CAPRI). Proteins 20 24227686
2017 Modeling CAPRI targets 110-120 by template-based and free docking using contact potential and combined scoring function. Proteins 19 28905425
2015 Mechanisms involved in quinolone resistance in Mycoplasma mycoides subsp. capri. Veterinary journal (London, England : 1997) 19 25951987
2011 Ca2+-dependent monomer and dimer formation switches CAPRI Protein between Ras GTPase-activating protein (GAP) and RapGAP activities. The Journal of biological chemistry 19 21460216
1978 Effect of membrane cholesterol on potassium transport in Mycoplasma mycoides var. Capri (PG3). Biochimica et biophysica acta 19 363150
2013 Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27. Proteins 18 24123494
2010 Enhancement of targeted homologous recombination in Mycoplasma mycoides subsp. capri by inclusion of heterologous recA. Applied and environmental microbiology 18 20802067
2006 Mycoplasma mycoides subsp. capri and Mycoplasma mycoides subsp. mycoides LC can be grouped into a single subspecies. Veterinary research 18 16973118
1979 Active K+ transport in Mycoplasma mycoides var. Capri. Net and unidirectional K+ movements. Biochimica et biophysica acta 18 378256
2021 Treponema denticola-Induced RASA4 Upregulation Mediates Cytoskeletal Dysfunction and MMP-2 Activity in Periodontal Fibroblasts. Frontiers in cellular and infection microbiology 17 34094999
2016 Modeling oblong proteins and water-mediated interfaces with RosettaDock in CAPRI rounds 28-35. Proteins 17 27667482
2010 Rosetta in CAPRI rounds 13-19. Proteins 17 20597089
2010 News from the "5th International Meeting on Inflammatory Bowel Diseases" CAPRI 2010. Journal of Crohn's & colitis 17 21122584
1979 Active K+ transport in Mycoplasms mycoides var. Capri. Relationships between K+ distribution, electrical potential and ATPase activity. Biochimica et biophysica acta 17 36912
2023 Efficacy and safety of a biomarker-driven cetuximab-based treatment regimen over 3 treatment lines in mCRC patients with RAS/BRAF wild type tumors at start of first line: The CAPRI 2 GOIM trial. Frontiers in oncology 16 36860319
2019 Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38-46. Proteins 16 31697428
2016 Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions. Proteins 16 27654025
2016 Protein-protein and peptide-protein docking and refinement using ATTRACT in CAPRI. Proteins 16 27785830
2003 GAPDOCK: a Genetic Algorithm Approach to Protein Docking in CAPRI round 1. Proteins 16 12784360
2019 Novel sampling strategies and a coarse-grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI rounds 37-45. Proteins 15 31742764
2007 The targets of CAPRI rounds 6-12. Proteins 15 17671980
2007 Assessing the energy landscape of CAPRI targets by FunHunt. Proteins 15 17803233
2016 Performance of ZDOCK and IRAD in CAPRI rounds 28-34. Proteins 14 27718275
2016 Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions. Proteins 14 27802576
2013 Improved flexible refinement of protein docking in CAPRI rounds 22-27. Proteins 14 23996302
2013 The targets of CAPRI rounds 20-27. Proteins 13 23900782
2006 The plasma membrane shuttling of CAPRI is related to regulation of mast cell activation. Biochemical and biophysical research communications 13 16815298

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