Affinage

CADM3

Cell adhesion molecule 3 · UniProt Q8N126

Length
398 aa
Mass
43.3 kDa
Annotated
2026-04-28
28 papers in source corpus 14 papers cited in narrative 14 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

CADM3 (Necl-1/SynCAM3) is a neural tissue-specific, calcium-independent immunoglobulin superfamily cell adhesion molecule that mediates homophilic and heterophilic trans-cellular adhesion—principally with Cadm4 at axon–glia interfaces—and organizes synaptic and myelinated fiber domains in both the central and peripheral nervous systems. Its N-terminal V-type Ig domain dimerizes through a Phe82-dependent interface to drive cell–cell adhesion, while its cytoplasmic tail recruits MAGUK scaffolds (Dlg3, Pals2, CASK) (PMID:15741237, PMID:16467305). On myelinated axons, Cadm3 is the dominant ligand for Schwann cell Cadm4, organizing Caspr and Kv1 channel distribution and negatively regulating myelination by dampening ErbB3/PI3K/Akt signaling; loss-of-function variants (Tyr172Cys, Gly368Cys) that reduce surface expression cause axonal Charcot–Marie–Tooth neuropathy (PMID:33397712, PMID:27658374, PMID:33889941, PMID:38074074). Cadm3 also directs cone-to-OFF bipolar cell synapse formation in the retina, maintains prefrontal noradrenergic homeostasis, promotes synaptogenesis, and acts as a tumor suppressor in glioma whose silencing is regulated by Sp1/HDAC1-dependent histone deacetylation (PMID:38623325, PMID:41308882, PMID:18686604, PMID:19062177).

Mechanistic history

Synthesis pass · year-by-year structured walk · 11 steps
  1. 2005 High

    Establishing that CADM3 mediates Ca²⁺-independent homophilic and heterophilic adhesion and couples to MAGUK scaffolds resolved its basic molecular mode of action as a synaptic/junctional adhesion molecule.

    Evidence Cell-cell adhesion assays, co-immunoprecipitation, immunoelectron microscopy in transfected cells

    PMID:15741237

    Open questions at the time
    • Relative affinities for different heterophilic partners not quantified
    • In vivo relevance of MAGUK interactions not tested
  2. 2006 High

    Solving the crystal structure of the V-domain dimer and identifying Phe82 as critical for adhesion defined the atomic basis of Cadm3 homophilic interaction.

    Evidence 2.4 Å crystal structure, size-exclusion chromatography, cross-linking, site-directed mutagenesis

    PMID:16467305

    Open questions at the time
    • Structure of heterophilic complexes (e.g., Cadm3–Cadm4) not determined
    • No in vivo mutagenesis to confirm Phe82 requirement
  3. 2008 Medium

    Demonstrating that CADM3 overexpression induces synapse formation between neurons and non-neuronal cells established it as a synaptogenic adhesion molecule.

    Evidence Overexpression in HEK293-neuron co-culture, synaptosome fractionation

    PMID:18686604

    Open questions at the time
    • Loss-of-function synaptogenic phenotype not shown in this study
    • Specific synaptic partners and downstream signaling not identified
  4. 2009 High

    Showing that CADM3 re-expression suppresses glioma proliferation, migration, and invasion while its silencing is governed by Sp1/HDAC1 at the promoter established its tumor suppressor function and epigenetic regulation.

    Evidence Cell cycle analysis, nude mouse xenograft, ChIP, co-IP for Sp1/HDAC1/p300, zymography, invasion assays

    PMID:19062177 PMID:20078932

    Open questions at the time
    • Mechanism linking Cadm3 adhesion to cell cycle arrest undefined
    • Whether HDAC-mediated silencing occurs in other neural tumor types not tested
  5. 2011 Medium

    In vitro binding assays in zebrafish demonstrated that Cadm3 preferentially binds Cadm4 heterophilically, identifying the key axon–glia adhesion partnership.

    Evidence In vitro binding assays with zebrafish Cadm proteins, immunohistochemistry

    PMID:21456004

    Open questions at the time
    • Quantitative affinity measurements not reported
    • Binding studied in zebrafish orthologs—mammalian specificity assumed but not directly shown
  6. 2016 High

    Bidirectional manipulation of axonal Cadm3 revealed that it negatively regulates PNS myelination by selectively dampening ErbB3/PI3K/Akt signaling, resolving how Cadm3 tunes myelin formation.

    Evidence shRNA knockdown and overexpression in DRG neuron–Schwann cell co-cultures, phospho-Western blots for ErbB3, Akt, Erk1/2

    PMID:27658374

    Open questions at the time
    • Mechanism by which Cadm3 extracellular domain interferes with ErbB3 activation unresolved
    • In vivo confirmation of signaling effects not provided in this study
  7. 2021 High

    Genetic epistasis in triple-KO mice proved that Cadm3 is the dominant axonal ligand for glial Cadm4 in organizing myelinated fiber domains (Caspr, Kv1 channels), while the Tyr172Cys disease variant demonstrated that reduced surface expression and impaired Cadm4 interaction cause axonal CMT neuropathy.

    Evidence Single/double/triple Cadm1/2/3 KO mice, Cadm3-Y170C knock-in mice, STORM imaging, mass spectrometry, electrodiagnostics

    PMID:33397712 PMID:33889941

    Open questions at the time
    • Whether Cadm3 signaling function (ErbB3 regulation) contributes to CMT pathology not tested
    • Structural basis of Cadm3–Cadm4 trans interaction not resolved at atomic level
  8. 2022 Medium

    SynCAM3 deletion reduced glial scar formation after spinal cord injury by preventing reactive-to-scar astrocyte transformation, revealing a CNS injury role for Cadm3.

    Evidence Cadm3 KO mice, spinal cord compression injury, scRNA-seq, behavioral assessment

    PMID:35682897

    Open questions at the time
    • Mechanism by which Cadm3 promotes scar astrocyte transformation unknown
    • Not independently replicated
  9. 2023 Medium

    A second CADM3 missense variant (Gly368Cys) causing autosomal dominant axonal CMT confirmed CADM3 as a bona fide CMT disease gene and extended the loss-of-surface-expression pathomechanism.

    Evidence Whole exome sequencing, membrane protein level quantification by Western blot, structural prediction

    PMID:38074074

    Open questions at the time
    • No knock-in animal model for this variant
    • Limited to structural prediction without experimental structural data
  10. 2024 High

    Cadm3 KO mice showed dislocated cone–OFF bipolar cell synapses and impaired short-wavelength cone signal transmission rescued by AMPA receptor potentiation, establishing Cadm3 as a retinal synapse organizer.

    Evidence Cadm3 KO mice, immunofluorescence, electroretinography, optokinetic response, pharmacological rescue

    PMID:38623325

    Open questions at the time
    • Whether Cadm3 acts through Cadm4 or a different partner in retina not determined
    • Mechanism linking Cadm3 loss to AMPA receptor dislocation unresolved
  11. 2025 High

    Cadm3 KO in rats causes prefrontal norepinephrine depletion, spine loss, and Adra2a upregulation rescued by PFC-targeted reconstitution, establishing Cadm3 as a synaptic–noradrenergic integrator in prefrontal circuits.

    Evidence Constitutive KO rats and mice, PFC-targeted viral rescue, mirtazapine pharmacology, NE measurement, behavioral assays

    PMID:41308882

    Open questions at the time
    • Direct molecular link between Cadm3 adhesion and noradrenergic terminal maintenance unknown
    • Whether this reflects a developmental or maintenance role not distinguished

Open questions

Synthesis pass · forward-looking unresolved questions
  • Key unresolved questions include the atomic structure of the Cadm3–Cadm4 heterophilic complex, the mechanism by which the Cadm3 ectodomain dampens ErbB3 activation, and whether its synaptic, myelination-regulatory, and tumor-suppressive functions share common intracellular signaling intermediates.
  • No structure of Cadm3–Cadm4 complex
  • Intracellular signaling downstream of Cadm3 adhesion poorly characterized beyond ErbB3/PI3K
  • Relationship between MAGUK scaffold recruitment and functional outcomes untested in vivo

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098631 cell adhesion mediator activity 5
Localization
GO:0005886 plasma membrane 4 GO:0005829 cytosol 1
Pathway
R-HSA-112316 Neuronal System 3 R-HSA-1500931 Cell-Cell communication 3 R-HSA-1266738 Developmental Biology 2 R-HSA-162582 Signal Transduction 1

Evidence

Reading pass · 14 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2005 Necl-1/CADM3 exhibits Ca2+-independent homophilic cell-cell adhesion activity and heterophilic adhesion with Necl-2/SynCAM1, nectin-1 and nectin-3. Its C-terminal cytoplasmic region binds membrane-associated guanylate kinase (MAGUK) subfamily members containing the L27 domain, including Dlg3, Pals2 and CASK, but does not bind afadin. Cell-cell adhesion assays, co-immunoprecipitation, immunofluorescence and immunoelectron microscopy Journal of cell science High 15741237
2006 The N-terminal Ig-like V domain of Necl-1/CADM3 is sufficient for homophilic interaction, crystallizes as a dimer confirmed by size-exclusion chromatography and chemical cross-linking, and Phe82 is a key residue for adhesion activity. Crystal structure at 2.4 Å, size-exclusion chromatography, chemical cross-linking, site-directed mutagenesis The Journal of biological chemistry High 16467305
2009 Re-expression of NECL1/CADM3 in glioma cells represses proliferation by inducing cell cycle arrest and reduces tumor growth in vivo; loss of NECL1 expression in glioma is caused at least partly by histone deacetylation, mediated through Sp1 binding to either HDAC1 (in untreated cells) or p300/CBP (after TSA treatment) at the NECL1 promoter. Cell proliferation assays, flow cytometry, nude mouse xenograft, luciferase reporter assay, chromatin immunoprecipitation, co-immunoprecipitation, HDAC activity assay Glia High 19062177
2009 Necl1/CADM3 expressed on Schwann cells (detected via Necl1-Fc affinity reagent) allows FACS-based isolation of myelination-competent Schwann cells, demonstrating that Necl1 is a surface marker mediating axon-Schwann cell contact. FACS-based cell isolation using Necl1-Fc fusion protein, myelinating co-culture assay Journal of neuroscience research Medium 19125407
2011 In vitro binding assays with zebrafish cadm3 show that cadm3 binds heterophilically and preferentially to cadm4 (the glial partner), consistent with its role in axon-glia contact; cadm3 and cadm2a show largely non-overlapping expression in developing retina and spinal cord. In vitro binding assays, subtype-specific antibodies, immunohistochemistry The Journal of comparative neurology Medium 21456004
2016 Axonal Cadm3 negatively regulates Schwann cell myelination: shRNA knockdown of Cadm3 in DRG neurons promotes myelination, while overexpression almost completely prevents myelin segment formation. Cadm3 extracellular domain interferes dose-dependently with activation of ErbB3 and the pro-myelinating PI3K/Akt pathway but not the Mek/Erk1/2 pathway. shRNA knockdown, overexpression in DRG neuron/Schwann cell myelinating co-culture, Western blot for ErbB3/PI3K/Akt/Erk phosphorylation Glia High 27658374
2021 Genetic epistasis in mice shows that Cadm3 is the main axonal ligand for glial Cadm4: triple knockout of Cadm1/2/3 phenocopies Cadm4 null abnormalities (Caspr and Kv1 potassium channel distribution defects); Cadm3 single KO combined with heterozygosity at Cadm1 and Cadm2 also produces defects, establishing a hierarchical adhesion code with Cadm3 as the dominant partner. Genetic epistasis (single, double, and triple knockout mice), immunofluorescence for Caspr and Kv1.2 distribution The Journal of neuroscience High 33397712
2021 A CADM3 Tyr172Cys variant causes axonal Charcot-Marie-Tooth disease; the mutation creates a novel disulfide bond altering protein conformation, causes ER retention and reduced cell surface expression, decreases co-localization with CADM4 at intercellular contact sites, and in Cadm3Y170C knock-in mice produces abnormal Kv1.2 channel and Caspr distribution without affecting myelin morphology. High-resolution mass spectrometry, STORM super-resolution microscopy, cell surface expression assay, Cadm3Y170C knock-in mice, immunofluorescence Brain High 33889941
2022 SynCAM3/CADM3 deletion in mice reduces glial scar formation after spinal cord injury by preventing transformation of reactive astrocytes into scar-forming astrocytes, resulting in improved functional recovery and ECM reconstitution. SynCAM3 knockout mice, spinal cord compression injury, single-cell RNA sequencing, qRT-PCR, immunohistochemistry, behavioral assessment International journal of molecular sciences Medium 35682897
2023 A novel CADM3 Gly368Cys variant causes axonal CMT neuropathy with autosomal dominant inheritance; functional analysis shows significantly decreased mutant CADM3 protein levels at the membrane and major predicted structural changes, extending the disease mechanism established for the Tyr172Cys variant. Whole exome sequencing, Western blot for membrane protein levels, structural prediction analysis Brain communications Medium 38074074
2024 Necl-1/CADM3 localizes at S- and S/M-opsin-containing cones and dendrites of type 4 OFF cone bipolar cells; Necl-1 knockout mice exhibit dislocated cone-to-type 4 OFF CBC synapses, abnormal horizontal cell distribution, dislocated AMPA receptors, and impaired short-wavelength cone signal transmission rescued by an AMPA receptor potentiator, indicating Necl-1 regulates cone synapse formation for OFF pathways. Immunofluorescence localization, Necl-1 knockout mice, electroretinography, optokinetic response assay, pharmacological rescue with AMPA receptor potentiator iScience High 38623325
2008 Overexpression of Necl1/CADM3 in HEK293 cells induces synapse formation between cocultured 293 cells and neurons, and ectopic expression in primary neurons increases synapse density; Necl1 expression increases during neuronal differentiation and is found in synaptosome fractions. Overexpression in 293/primary neuron co-culture, immunofluorescence, synaptosome fractionation, Western blot Zhongguo yi xue ke xue yuan xue bao Medium 18686604
2009 Restoration of NECL1/CADM3 in NECL1-deficient U251 glioma cells inhibits migration and invasion, reduces extracellular metalloproteinase activity, and promotes astrocytic differentiation with upregulation of GFAP. Scratch assay, Transwell invasion assay, zymography for metalloproteinase activity, Western blot for GFAP Acta Academiae Medicinae Sinicae Medium 20078932
2025 Constitutive Necl1/CADM3 knockout in rats causes prefrontal cortex-specific noradrenergic dysfunction characterized by norepinephrine depletion, dendritic spine loss, and upregulation of adrenergic receptor α2A (Adra2a); PFC-targeted Necl1 reconstitution rescues depressive phenotypes and normalizes Adra2a expression, establishing Necl1 as a synaptic-noradrenergic integrator. Constitutive KO in rats and mice, behavioral assays, PFC-targeted viral reconstitution, adrenergic receptor antagonism (mirtazapine), norepinephrine measurement Journal of affective disorders High 41308882

Source papers

Stage 0 corpus · 28 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2005 Nectin-like molecule-1/TSLL1/SynCAM3: a neural tissue-specific immunoglobulin-like cell-cell adhesion molecule localizing at non-junctional contact sites of presynaptic nerve terminals, axons and glia cell processes. Journal of cell science 110 15741237
2011 Plant pathogenic bacteria utilize biofilm growth-associated repressor (BigR), a novel winged-helix redox switch, to control hydrogen sulfide detoxification under hypoxia. The Journal of biological chemistry 67 21632538
2001 Isolation of the TSLL1 and TSLL2 genes, members of the tumor suppressor TSLC1 gene family encoding transmembrane proteins. Oncogene 61 11536053
2006 Crystal structure of the V domain of human Nectin-like molecule-1/Syncam3/Tsll1/Igsf4b, a neural tissue-specific immunoglobulin-like cell-cell adhesion molecule. The Journal of biological chemistry 40 16467305
2009 Loss of NECL1, a novel tumor suppressor, can be restored in glioma by HDAC inhibitor-Trichostatin A through Sp1 binding site. Glia 39 19062177
2007 BigR, a transcriptional repressor from plant-associated bacteria, regulates an operon implicated in biofilm growth. Journal of bacteriology 35 17586627
2021 Differential Contribution of Cadm1-Cadm3 Cell Adhesion Molecules to Peripheral Myelinated Axons. The Journal of neuroscience : the official journal of the Society for Neuroscience 25 33397712
2018 BigR is a sulfide sensor that regulates a sulfur transferase/dioxygenase required for aerobic respiration of plant bacteria under sulfide stress. Scientific reports 23 29472641
2011 Localization of Cadm2a and Cadm3 proteins during development of the zebrafish nervous system. The Journal of comparative neurology 23 21456004
2018 miR-140-5p suppresses retinoblastoma cell proliferation, migration, and invasion by targeting CEMIP and CADM3. Cellular and molecular biology (Noisy-le-Grand, France) 20 29808799
2016 Cadm3 (Necl-1) interferes with the activation of the PI3 kinase/Akt signaling cascade and inhibits Schwann cell myelination in vitro. Glia 20 27658374
2016 NECL1 coated PLGA as favorable conduits for repair of injured peripheral nerve. Materials science & engineering. C, Materials for biological applications 18 27772714
2021 A CADM3 variant causes Charcot-Marie-Tooth disease with marked upper limb involvement. Brain : a journal of neurology 16 33889941
2022 The Sulfide-Responsive SqrR/BigR Homologous Regulator YgaV of Escherichia coli Controls Expression of Anaerobic Respiratory Genes and Antibiotic Tolerance. Antioxidants (Basel, Switzerland) 12 36552568
2009 A novel method for isolating Schwann cells using the extracellular domain of Necl1. Journal of neuroscience research 12 19125407
2003 Isolation of the mouse Tsll1 and Tsll2 genes, orthologues of the human TSLC1-like genes 1 and 2 (TSLL1 and TSLL2). Gene 12 14659875
2022 Synaptic Cell Adhesion Molecule 3 (SynCAM3) Deletion Promotes Recovery from Spinal Cord Injury by Limiting Glial Scar Formation. International journal of molecular sciences 10 35682897
2007 Crystallization and preliminary X-ray analysis of BigR, a transcription repressor from Xylella fastidiosa involved in biofilm formation. Acta crystallographica. Section F, Structural biology and crystallization communications 9 17620720
2023 GRIK5 stimulates colon cancer growth and metastasis through cAMP/PKA/CADM3 signaling. Cell biology international 8 36959746
2022 Circ004463 promotes fibroblast proliferation and collagen I synthesis by sponging miR-23b and regulating CADM3/MAP4K4 via activation of AKT/ERK pathways. International journal of biological macromolecules 8 36502948
2022 Usefulness of SynCAM3 and cyclin D1 immunohistochemistry in distinguishing superficial CD34-positive fibroblastic tumor from its histological mimics. Medical molecular morphology 6 36344703
2023 Novel variant in CADM3 causes Charcot-Marie-Tooth disease. Brain communications 3 38074074
2024 Clinical significance of low expression of CADM3 in breast cancer and preliminary exploration of related mechanisms. BMC cancer 2 38515057
2024 Necl-1/CADM3 regulates cone synapse formation in the mouse retina. iScience 2 38623325
2009 [Neural adhesion molecule NECL1 inhibits migration, invasion, and potentially induces differentiation of glioma cell]. Zhongguo yi xue ke xue yuan xue bao. Acta Academiae Medicinae Sinicae 1 20078932
2008 [Role of cell adhesion molecules Necl1 in synaptogenesis in primary cultured rat neurons]. Zhongguo yi xue ke xue yuan xue bao. Acta Academiae Medicinae Sinicae 1 18686604
2008 [Effect of NECL1 on the proliferation of T98G glioma cell line]. Zhongguo yi xue ke xue yuan xue bao. Acta Academiae Medicinae Sinicae 1 18686605
2025 Necl1 deficiency induces noradrenergic dysfunction and depressive-like states in rodents: A cross-species model validated by pharmacological intervention. Journal of affective disorders 0 41308882