Affinage

ATP1B3

Sodium/potassium-transporting ATPase subunit beta-3 · UniProt P54709

Length
279 aa
Mass
31.5 kDa
Annotated
2026-06-09
13 papers in source corpus 7 papers cited in narrative 7 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

ATP1B3 is the β3 subunit of the Na+/K+-ATPase, associating with the catalytic α subunit at cell membranes to support ion-pump assembly and activity (PMID:17176442). Its maturation is governed in the endoplasmic reticulum by CASPR1, which binds the non-glycosylated core form of ATP1B3 (but not the α1 subunit) to drive ATP1B3 glycosylation and plasma-membrane trafficking of the assembled pump; loss of CASPR1 blocks ATP1B3 glycosylation and α1/β3 surface localization, lowering Na+/K+-ATPase activity and impairing glutamate efflux across the blood-brain barrier (PMID:30792309). Beyond ion transport, ATP1B3 acts as an antiviral host factor through several routes: it binds the Enterovirus 71 3A protein and restricts EV71 replication by enhancing type-I interferon production (PMID:27240146), and it restricts hepatitis B virus by activating the NF-κB pathway (P65 phosphorylation and nuclear import) to raise IFN-α, IL-6, and BST-2 levels (PMID:31556466) and, independently of NF-κB, by binding HBV large and medium envelope proteins to drive their polyubiquitination and proteasomal degradation (PMID:33534085). ATP1B3 also serves as a co-factor that accelerates BST-2 degradation and lowers BST-2 surface expression, thereby tuning BST-2-dependent HIV-1 restriction and NF-κB activation (PMID:26694617).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 2006 Medium

    Established that ATP1B3 is a bona fide β subunit of the Na,K-ATPase by demonstrating its physical association with the catalytic α subunit at cell membranes, anchoring its canonical ion-transport role.

    Evidence Monoclonal antibody immunoprecipitation and flow cytometry on leukocytes and red blood cell membranes

    PMID:17176442

    Open questions at the time
    • Single Co-IP without structural or stoichiometric detail
    • Functional consequence for pump activity not directly measured
    • Tissue-specific epitope accessibility not mechanistically explained
  2. 2015 Medium

    Revealed a non-pump role for ATP1B3 as a co-factor that binds BST-2 and accelerates its degradation, linking ATP1B3 to HIV-1 restriction and NF-κB regulation.

    Evidence Co-immunoprecipitation, siRNA depletion, HIV-1 production and NF-κB reporter assays, BST-2 surface flow cytometry in HeLa cells

    PMID:26694617

    Open questions at the time
    • Molecular mechanism of how ATP1B3 accelerates BST-2 degradation not defined
    • Degradation pathway (proteasomal/lysosomal) not pinned down
    • Single-lab finding
  3. 2016 Medium

    Identified ATP1B3 as an antiviral factor against EV71 that binds the viral 3A protein and restricts replication by boosting type-I interferon, broadening its role to direct viral protein engagement.

    Evidence Yeast two-hybrid, siRNA knockdown and overexpression in RD cells with interferon measurement

    PMID:27240146

    Open questions at the time
    • Mechanism linking 3A binding to interferon induction unresolved
    • Interaction not confirmed by reciprocal Co-IP in this entry
    • In vivo relevance untested
  4. 2019 High

    Defined the biogenesis pathway of ATP1B3 by showing CASPR1 binds its non-glycosylated core form in the ER to enable glycosylation and pump trafficking, connecting ATP1B3 maturation to blood-brain barrier glutamate efflux.

    Evidence Yeast two-hybrid, GST-pulldown, reciprocal Co-IP, RNAi, immunofluorescence, Na+/K+-ATPase activity and glutamate efflux assays in brain microvascular endothelial cells

    PMID:30792309

    Open questions at the time
    • Structural basis of CASPR1 recognition of core ATP1B3 not resolved
    • Whether CASPR1 acts catalytically or stoichiometrically unknown
    • Generality across non-endothelial cell types untested
  5. 2019 Medium

    Showed that ATP1B3 restricts HBV through NF-κB activation, establishing a signaling axis (P65 → IFN-α/IL-6/BST-2) that suppresses viral antigen secretion.

    Evidence Overexpression and shRNA in HepG2 cells, NF-κB Western blots, ELISA for HBsAg/HBeAg, Bay11 pharmacological epistasis

    PMID:31556466

    Open questions at the time
    • Upstream link between ATP1B3 and NF-κB activation not defined
    • Whether pump function is required for signaling unknown
    • Single-lab finding
  6. 2021 Medium

    Uncovered a second, NF-κB-independent HBV restriction mechanism in which ATP1B3 directly binds HBV envelope proteins and targets them for proteasomal degradation via polyubiquitination.

    Evidence Co-IP, immunofluorescence co-localization, ubiquitination assay, MG132 rescue, overexpression/silencing in HepG2 cells

    PMID:33534085

    Open questions at the time
    • E3 ligase responsible for polyubiquitination not identified
    • Direct vs. adaptor-mediated ubiquitin transfer unclear
    • Single-lab finding
  7. 2025 Low

    Implicated ATP1B3 in glioma cell proliferation and invasion correlated with MAPK and NF-κB pathway activity, while showing it does not directly bind PPP1CA.

    Evidence siRNA knockdown in U87MG/U251MG cells, proliferation/Transwell assays, Western blot of MAPK/NF-κB components, negative PPP1CA Co-IP

    PMID:40027130

    Open questions at the time
    • Pathway placement inferred from Western blot correlation without epistasis
    • Single knockdown approach, single lab
    • Mechanism of indirect PPP1CA regulation undefined

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unknown how ATP1B3's canonical ion-pump function mechanistically connects to its diverse antiviral and signaling activities, and which E3 ligase and upstream signal couple ATP1B3 to ubiquitination and NF-κB.
  • No unifying mechanism linking pump role to immune/signaling functions
  • E3 ligase and recruitment mechanism for envelope-protein degradation unidentified
  • Direct trigger of NF-κB activation by ATP1B3 unresolved

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005215 transporter activity 2 GO:0140096 catalytic activity, acting on a protein 1
Localization
GO:0005886 plasma membrane 2 GO:0005783 endoplasmic reticulum 1
Pathway
R-HSA-168256 Immune System 4 R-HSA-382551 Transport of small molecules 2
Complex memberships
Na+/K+-ATPase

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2016 ATP1B3 interacts with the 3A protein of Enterovirus 71 (EV71), as identified by yeast two-hybrid assay. EV71 infection elevates ATP1B3 expression, and ATP1B3 inhibits EV71 replication by enhancing production of type-I interferons. Yeast two-hybrid, siRNA knockdown, overexpression in RD cells, type-I interferon measurement Virology Medium 27240146
2015 ATP1B3 binds BST-2 (identified by co-immunoprecipitation) and acts as a co-factor that accelerates BST-2 degradation, reducing BST-2 surface expression. Depletion of ATP1B3 in BST-2-positive HeLa cells increases HIV-1 restriction and NF-κB activation in a BST-2-dependent manner. Co-immunoprecipitation, siRNA knockdown, HIV-1 production assay, NF-κB reporter assay, flow cytometry for BST-2 surface expression The Journal of biological chemistry Medium 26694617
2019 CASPR1 binds the non-glycosylated core form of ATP1B3 (not the α1 subunit) in the endoplasmic reticulum of brain microvascular endothelial cells, facilitating ATP1B3 glycosylation and plasma membrane trafficking of the Na+/K+-ATPase complex. CASPR1 knockdown reduces ATP1B3 glycosylation, prevents plasma membrane localization of ATP1B3 and α1 subunit, reduces Na+/K+-ATPase activity, and impairs glutamate efflux across the blood-brain barrier. Yeast two-hybrid, GST-pulldown, reciprocal co-immunoprecipitation, RNAi, immunofluorescence, Na+/K+-ATPase activity assay, glutamate efflux assay The Journal of biological chemistry High 30792309
2006 The ATP1B3 (β3) subunit associates with the α subunit of Na,K-ATPase, as demonstrated by immunoprecipitation from cell membranes. ATP1B3 is expressed on peripheral blood leukocytes and is detectable on thalassemic red blood cell membranes (epitope cryptic in normal RBCs). Monoclonal antibody (P-3E10), immunoprecipitation, immunofluorescence flow cytometry Tissue antigens Medium 17176442
2019 ATP1B3 overexpression activates the NF-κB pathway (inducing P65 expression, phosphorylation, and nuclear import), which in turn increases IFN-α and IL-6 production and upregulates BST-2 expression, collectively restricting hepatitis B virus (HBV) replication and HBsAg/HBeAg secretion. NF-κB inhibitor Bay11 reverses ATP1B3-mediated HBV restriction, confirming NF-κB dependence. Overexpression and siRNA/shRNA in HepG2 cells, NF-κB pathway Western blot (P65 phosphorylation/nuclear import), ELISA for HBsAg/HBeAg, pharmacological inhibition (Bay11), BST-2 mRNA/protein measurement Journal of medical virology Medium 31556466
2021 ATP1B3 restricts HBV replication by a second, NF-κB-independent mechanism: it interacts directly with HBV large (LHBs) and medium (MHBs) envelope proteins (Co-IP), induces their polyubiquitination, and promotes their degradation via the proteasome pathway (reversed by MG132). ATP1B3 did not affect intracellular HBV DNA/RNA or HBV promoter activities. Co-immunoprecipitation, immunofluorescence co-localization, ubiquitination assay, proteasome inhibitor (MG132), overexpression and silencing in HepG2 cells Virologica Sinica Medium 33534085
2025 In glioma cells, ATP1B3 knockdown reduces proliferation, migration, and invasion, accompanied by decreased expression of downstream MAPK pathway components (p-Raf1, p-MEK1/2, p-ERK1/2) and NF-κB components (p-IκBα, p-P65), as well as reduced Cyclin D1 and VEGFA. ATP1B3 does not directly bind PPP1CA (immunoprecipitation was negative), but PPP1CA expression is reduced after ATP1B3 knockdown, suggesting indirect regulation. siRNA knockdown in U87MG and U251MG glioma cells, CCK-8 proliferation assay, Transwell assay, Western blot for MAPK/NF-κB pathway proteins, immunoprecipitation (negative for ATP1B3–PPP1CA direct interaction), immunofluorescence Frontiers in oncology Low 40027130

Source papers

Stage 0 corpus · 13 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2021 Integrative Transcriptomic, Proteomic and Functional Analysis Reveals ATP1B3 as a Diagnostic and Potential Therapeutic Target in Hepatocellular Carcinoma. Frontiers in immunology 25 33868261
2021 circSPG21 protects against intervertebral disc disease by targeting miR-1197/ATP1B3. Experimental & molecular medicine 20 34611269
2016 ATP1B3: a virus-induced host factor against EV71 replication by up-regulating the production of type-I interferons. Virology 18 27240146
2015 ATP1B3 Protein Modulates the Restriction of HIV-1 Production and Nuclear Factor κ Light Chain Enhancer of Activated B Cells (NF-κB) Activation by BST-2. The Journal of biological chemistry 15 26694617
2019 A CASPR1-ATP1B3 protein interaction modulates plasma membrane localization of Na+/K+-ATPase in brain microvascular endothelial cells. The Journal of biological chemistry 12 30792309
2006 Na, K ATPase beta3 subunit (CD298): association with alpha subunit and expression on peripheral blood cells. Tissue antigens 12 17176442
2019 ATP1B3 cooperates with BST-2 to promote hepatitis B virus restriction. Journal of medical virology 10 31556466
2001 Absence of a significant linkage between Na(+),K(+)-ATPase subunit (ATP1A3 and ATP1B3) genotypes and bipolar affective disorder in the old-order Amish. American journal of medical genetics 7 11353452
2022 Evaluation of the Sensitivity of Breast Cancer Cell Lines to Cardiac Glycosides Unveils ATP1B3 as a Possible Biomarker for the Personalized Treatment of ERα Expressing Breast Cancers. International journal of molecular sciences 6 36232400
2022 [Screening and identification of key genes ATP1B3 and ENAH in the progression of hepatocellular carcinoma: based on data mining and clinical validation]. Nan fang yi ke da xue xue bao = Journal of Southern Medical University 2 35790431
2021 ATP1B3 Restricts Hepatitis B Virus Replication Via Reducing the Expression of the Envelope Proteins. Virologica Sinica 2 33534085
2025 ATP1B3 may promote glioma proliferation and migration through MAPK/NF-KB signaling pathway. Frontiers in oncology 1 40027130
2025 Integrative Multi-Omics and Functional Validation Reveal the Role of the TACE Refractoriness-Associated Gene ATP1B3 in Hepatocellular Carcinoma. Journal of hepatocellular carcinoma 1 41293558

Missed literature

Know a paper Affinage missed for ATP1B3? Flag it for the maintainers and the community.

No submissions yet.