| 1996 |
ARNT2 interacts with AHR and SIM1 (mouse Sim) as efficiently as ARNT1, and the ARNT2-AHR complex specifically binds the xenobiotic responsive element (XRE) sequence. ARNT2 successfully rescued XRE-driven reporter gene activity in ARNT-defective Hepa-1 c4 mutant cells. |
Coimmunoprecipitation, gel mobility shift assay, yeast two-hybrid system, reporter gene rescue assay |
Molecular and cellular biology |
High |
8657146
|
| 2000 |
ARNT2 forms functional HIF complexes in vivo; ARNT2 restores hypoxia-induced gene expression to ARNT-deficient ES cells and hepatocytes, demonstrating that ARNT2/HIF-1alpha heterodimers can mediate oxygen-responsive transcription. |
Complementation assay in ARNT-deficient ES cells and hepatocytes; in vivo teratocarcinoma VEGF expression analysis |
Biochemical and biophysical research communications |
High |
10873592 11381139
|
| 2000 |
ARNT2 acts as the dimerization partner of SIM1 for hypothalamic development: SIM1 and ARNT2 form dimers in vitro, are co-expressed in the paraventricular nucleus (PVN) and supraoptic nucleus (SON), and loss of either gene affects the same sets of neuroendocrine cell types. |
In vitro dimerization assay, co-expression analysis by in situ hybridization, genetic loss-of-function comparison |
Mechanisms of development |
High |
10640708 11318878 11381139
|
| 2001 |
Arnt2 null mice die perinatally with impaired hypothalamic development (hypocellular PVN/SON) identical to Sim1 mutant mice; cultured Arnt2-/- neurons show decreased hypoxic induction of HIF-1 target genes, demonstrating that ARNT2/HIF-1alpha complexes regulate oxygen-responsive genes. A strong genetic interaction between Arnt and Arnt2 was observed, indicating dose-dependent functional overlap before embryonic day 8.5. |
Targeted gene knockout, histology, immunostaining, hypoxia-responsive gene induction assay in primary neurons, genetic epistasis (Arnt;Arnt2 double heterozygotes) |
Proceedings of the National Academy of Sciences of the United States of America |
High |
11381139
|
| 2001 |
ARNT2 is required for the final differentiation stages of secretory neurons in the hypothalamic PVN and SON (arginine vasopressin, oxytocin, CRH, and somatostatin neurons are absent in Arnt2 knockout mice); Brn2+ precursors appear but fail to express neurosecretory hormones, placing ARNT2 function at a late differentiation step. |
Gene targeting knockout, immunohistochemistry, in situ hybridization for hormone markers and Brn2 |
Genes to cells : devoted to molecular & cellular mechanisms |
High |
11318878
|
| 2006 |
ARNT2 is practically incapable of supporting AHR-driven xenobiotic-responsive gene induction (XRE-reporter and CYP1A1), unlike ARNT1. This functional difference is attributed to a single His/Pro amino acid difference in the PASB domain. Conversely, ARNT and ARNT2 show similar levels of HIF-alpha-dependent hypoxia response element (HRE)-driven reporter expression. |
Stable and transient expression of wild-type, mutant, and chimeric ARNT/ARNT2 constructs in Hepa1-c4 cells; reporter gene assays; endogenous gene (CYP1A1, Glut-1) induction assays; site-directed mutagenesis |
The Journal of biological chemistry |
High |
17023418
|
| 2007 |
Necdin (NDN) directly interacts with ARNT2 via separate domains and can also interact with HIF1alpha; NDN represses transcriptional activation mediated by ARNT2:SIM1 and ARNT2:HIF1alpha complexes. The N-terminal 115 residues of NDN are sufficient for interaction with the bHLH domains of ARNT2 or HIF1alpha but not for transcriptional repression. |
Co-immunoprecipitation, pulldown, GAL4 fusion reporter assay, domain deletion analysis |
Biochemical and biophysical research communications |
Medium |
17826745
|
| 2007 |
In vitro, ARNT2 dimerizes equally with AHR in the presence of TCDD and can outcompete ARNT1 for AHR binding when expressed in excess. However, in Hepa-1 cell culture, ARNT2 is largely unable to induce endogenous CYP1A1 protein, and mutation of Pro352 to His in ARNT2 (mimicking ARNT1) failed to rescue AHR-mediated signaling. Expression of ARNT2 in wild-type Hepa-1 cells reduced TCDD-mediated CYP1A1 induction by ~30%. |
In vitro dimerization assay, co-immunoprecipitation, Western blot, site-directed mutagenesis, endogenous CYP1A1 protein induction assay |
Toxicological sciences : an official journal of the Society of Toxicology |
Medium |
18096572
|
| 2000 |
Zebrafish ARNT2b (full-length) forms a functional heterodimer with zfAHR2 that specifically recognizes dioxin-responsive elements (XREs) in gel shift experiments and induces XRE-driven transcription in COS-7 cells treated with TCDD. In contrast, zfARNT2a (a splice variant lacking C-terminal sequences) fails to induce reporter activity, due to inefficient DNA binding of the zfARNT2a/zfAHR2 complex. |
Reporter gene assay, DNA gel shift (EMSA), RT-PCR tissue distribution, COS-7 cell cotransfection |
Biochimica et biophysica acta |
Medium |
11072074
|
| 2003 |
SIM1 and ARNT2 cooperatively activate a downstream transcriptional program in neuronal cells: microarray and Northern blot analysis identified 268 potential target genes upregulated >1.7-fold by SIM1/ARNT2 in an inducible neuronal cell system, including Jak2 and thyroid hormone receptor beta2 whose expression was lost in the Sim1 mutant hypothalamus. |
Inducible expression system in neuronal cell line combined with microarray and Northern blot; in vivo validation by in situ hybridization in Sim1 mutant mice |
The Journal of biological chemistry |
Medium |
12947113
|
| 2013 |
In zebrafish, Sim1a and Arnt2 transcription factors negatively regulate robo3a.1 expression; depletion of either Sim1a or Arnt2 increases robo3a.1 levels in the hypothalamus, which in turn attenuates Robo2-mediated repulsive axon guidance, displacing hypothalamo-spinal longitudinal axons toward the midline. This phenotype is suppressed in robo3 mutant embryos. |
Morpholino knockdown, genetic epistasis with robo3 mutant, in situ hybridization, axon tracing |
Development (Cambridge, England) |
Medium |
23222439
|
| 2013 |
During neuronal differentiation, the Arnt2 promoter transitions from a bivalent state (H3K4me3 + H3K27me3) in P19/ES cells to loss of the repressive H3K27me3 mark, allowing high Arnt2 expression. The Arnt2 promoter is heavily methylated in hepatoma (Arnt-only) cells. mRNA half-lives of Arnt and Arnt2 are similar in both cell types, indicating that the reciprocal expression switch is transcriptionally regulated via epigenetic mechanisms. |
ChIP for H3K4me3/H3K27me3, bisulfite sequencing, mRNA half-life measurement, P19 neuronal differentiation model |
Nucleic acids research |
Medium |
23599003
|
| 2013 |
A human ARNT2 variant R46W reduces transcriptional activity of the NPAS4/ARNT2 heterodimer on a reporter gene due to disruption of nuclear localization of ARNT2; a second variant R107H also significantly reduces transcriptional activity. |
Luciferase reporter assay, subcellular localization analysis, site-directed mutagenesis of human variants |
PloS one |
Medium |
24465693
|
| 2014 |
Low-activity SIM1 variants found in obese humans frequently cause impaired dimerization with ARNT2. Homology modeling of the SIM1 PAS-A and PAS-B domains identified a mutational hot-spot critical for SIM1–ARNT2 dimerization. |
Co-immunoprecipitation, luciferase reporter assay, homology modelling of PAS domain dimerization interface |
The Biochemical journal |
Medium |
24814368
|
| 2022 |
Crystal structures of NPAS4-ARNT and NPAS4-ARNT2 heterodimers in complex with DNA response elements reveal uniquely interconnected domain conformations: ARNT and ARNT2 PAS-A domains adopt variable conformations within these two heterodimers, and the ARNT PAS-A domain forms a distinct interface with the PAS-A and PAS-B domains of NPAS4. PAS-B domains of NPAS4, ARNT, and ARNT2 all contain ligand-accessible pockets. |
X-ray crystallography (quaternary heterodimer structures), biochemical assays, cell-based functional assays |
Proceedings of the National Academy of Sciences of the United States of America |
High |
36343253
|
| 2018 |
A missense mutation Arg74Cys (R74C) in ARNT2 (a hypomorphic allele identified by ENU mutagenesis and confirmed by CRISPR/Cas9 knock-in) causes hyperphagic obesity, hepatic steatosis, and abnormal glucose homeostasis in mice. The mutant ARNT2 protein shows decreased transcriptional activity when co-expressed with SIM1. |
ENU mutagenesis screen, CRISPR/Cas9 recapitulation, metabolic phenotyping, co-expression transcriptional activity assay |
Disease models & mechanisms |
High |
30563851
|
| 2013 |
Loss-of-function mutation in ARNT2 (homozygous frameshift c.1373_1374dupTC) in humans results in absence of detectable ARNT2 transcript and protein (consistent with nonsense-mediated decay), causing secondary microcephaly, multiple pituitary hormone deficiency, visual impairment, and renal anomalies, establishing ARNT2 as essential for hypothalamo-pituitary axis development in humans. |
Homozygosity mapping, exome sequencing, RT-PCR and Western blot from patient fibroblasts (demonstrating loss of transcript and protein), immunohistochemistry of human embryonic tissue |
Brain : a journal of neurology |
High |
24022475
|
| 2019 |
ARNT2 forms a complex with NCoR2 that plays a dual (Yin/Yang) role in activity-dependent transcription in neurons (referenced mechanistic discovery reported by Sharma et al. 2019 as described in this commentary). |
Activity-dependent transcriptome analysis (as summarized in commentary) |
Neuron |
Low |
30998895
|
| 2024 |
ARNT2 expression in somatostatin (SST)-expressing interneurons of the anterior cingulate cortex (ACC) is required for affective empathy (observational fear) in mice: selective ARNT2 ablation in SST interneurons reduces pyramidal cell excitability, increases spontaneous firing, disrupts Ca2+ dynamics and theta oscillations in the ACC, resulting in reduced vicarious freezing. |
Forward genetic mapping, transcriptome analysis, conditional ARNT2 ablation in SST interneurons, in vivo Ca2+ imaging, electrophysiology, behavioral testing |
Cell reports |
High |
39180750
|
| 2023 |
In zebrafish, arnt1 and arnt2 are jointly required for hemato-vascular specification: arnt1;arnt2 double mutants (but not single mutants) lack blood cells and most endothelial cells, with absent expression of earliest endothelial/hematopoietic transcription factors etsrp and tal1. Npas4l binds both Arnt1 and Arnt2 proteins in vitro, indicating these factors form a multimeric complex to specify hemato-vascular fate. |
Genetic double mutant analysis, in situ hybridization for etsrp/tal1, in vitro binding assay (Npas4l with Arnt1/Arnt2) |
Development (Cambridge, England) |
Medium |
37039097
|
| 2001 |
ARNT2 immunoreactivity is localized exclusively to nuclei of brain neurons and PC12 cells. Downregulation of ARNT2 by antisense oligonucleotides in PC12 cells prevented cell proliferation and induced apoptosis. Cell death from focal ischemia or oxidative stress was preceded by near-complete suppression of ARNT2 expression. |
Immunocytochemistry (subcellular localization), antisense oligonucleotide knockdown with apoptosis/proliferation readout, focal ischemia model |
The European journal of neuroscience |
Medium |
10215907
|
| 2017 |
ARNT2 knockdown in glioblastoma stem-like cells decreased expression of SOX9, POU3F2, and OLIG2 (transcription factors implicated in GBM tumorigenicity) and repressed tumorigenic properties in vivo, positioning ARNT2 upstream of these oncogenic transcription factors in GBM. |
siRNA knockdown, in vivo xenograft tumorigenicity assay, ChIP for histone marks (H3K4me3/H3K27me3) to identify ARNT2 in tumorigenic signature |
Acta neuropathologica |
Medium |
29149419
|
| 2025 |
ARNT2 directly binds the STRA6 promoter to transcriptionally upregulate STRA6, thereby reprogramming fatty acid metabolism (elevating fatty acid metabolic enzymes, lipid droplet accumulation, and triglycerides) and promoting retroperitoneal liposarcoma cell proliferation and invasion. |
ChIP (ARNT2 binding to STRA6 promoter), promoter reporter assay, CCK8, Transwell invasion, lipid droplet/triglyceride quantification, in vivo xenograft |
Journal of cancer research and clinical oncology |
Medium |
41108418
|