Affinage

AK1

Adenylate kinase isoenzyme 1 · UniProt P00568

Length
194 aa
Mass
21.6 kDa
Annotated
2026-06-09
49 papers in source corpus 13 papers cited in narrative 13 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

AK1 is a cytosolic phosphotransferase that sustains intracellular energy communication and nucleotide homeostasis, functioning as a critical node in the high-energy phosphoryl relay between ATP-producing and ATP-consuming sites (PMID:11006295, PMID:2261892). In the heart, AK1-catalyzed beta-phosphoryl transfer maintains myocardial energetic homeostasis under metabolic stress: its loss lowers intracellular ATP, raises the Pi/ATP ratio, suppresses adenosine generation, and accelerates contractile failure at the onset of ischemia, with residual phosphotransfer compensated by other AK isoforms, creatine kinase, and glycolytic flux (PMID:11006295, PMID:12124227). AK1 phosphotransfer also synchronizes Pi turnover at ATP-consuming sites with gamma-ATP exchange at synthesis sites and couples cardiac contractility to coronary flow, with a sarcolemma-associated splice variant AK1beta facilitating adenosine production that rescues post-ischemic coronary reflow (PMID:17704060). In skeletal muscle, AK1 contributes to phosphoryl delivery to the actomyosin ATPase, and its combined disruption with cytosolic creatine kinase severely curtails total ATP turnover and contractile performance (PMID:12730234). The AK1 gene generates two isoforms via alternative promoters and polyadenylation—cytosolic AK1 and N-terminally distinct membrane-bound AK1beta, which localizes to the plasma membrane and mediates AMP-induced activation of ATP-sensitive potassium channels (PMID:14977170). Human loss-of-function mutations abolishing erythrocyte AK activity cause congenital chronic hemolytic anemia, identifying Tyr164 and Arg107 as residues essential for enzymatic function (PMID:9432020, PMID:10233365).

Mechanistic history

Synthesis pass · year-by-year structured walk · 12 steps
  1. 1988 High

    Establishing whether the adenylate kinase gene is essential and whether redundant isozymes exist was answered first in yeast, where disruption impaired proliferation but not viability and left residual AK activity.

    Evidence ADK1 gene disruption with immunological assay and 31P NMR in S. cerevisiae

    PMID:2848829

    Open questions at the time
    • Does not address mammalian isoform organization
    • Identity of the compensating isozymes not defined
  2. 1990 Medium

    Defining where AK1 acts and distinguishing it from mitochondrial AK2 established AK1 as the cytosolic isoenzyme across multiple tissues.

    Evidence Isoelectric focusing, monoclonal antibody immunostaining, and partial purification from bovine tissues

    PMID:2261892

    Open questions at the time
    • Subcellular distribution inferred biochemically, not by live imaging
    • Functional consequence of cytosolic localization not tested
  3. 1997 Medium

    Linking AK1 to human disease, a Tyr164Cys substitution abolishing erythrocyte AK activity established the residue as functionally critical and tied AK1 loss to hemolytic anemia.

    Evidence PCR-SSCP, Sanger sequencing, and spectrophotometric AK assay in patient red cells

    PMID:9432020

    Open questions at the time
    • Single family
    • Mechanism linking enzyme loss to hemolysis not resolved
  4. 1999 Medium

    A nonsense Arg107Stop allele producing a truncated inactive protein confirmed the genotype-phenotype link and extended it to psychomotor impairment.

    Evidence cDNA sequencing and erythrocyte AK activity assay in patients

    PMID:10233365

    Open questions at the time
    • Single family
    • Basis of neurological involvement not established
  5. 2000 High

    Determining AK1's quantitative role in cardiac energetics, a knockout showing near-total loss of AK phosphotransfer with collapse of ATP buffering and adenosine signaling under hypoxia established AK1 as essential for myocardial energetic homeostasis under stress.

    Evidence [18O] phosphoryl analysis, 31P NMR, and mass spectrometry in AK1 knockout mouse hearts

    PMID:11006295

    Open questions at the time
    • Compensating pathways not yet quantified
    • Does not address membrane-bound isoform
  6. 2002 High

    Resolving how hearts survive AK1 loss, ischemia-reperfusion studies showed compensatory creatine kinase, glycolytic, and AK-isoform flux restores postischemic recovery despite acute contractile vulnerability.

    Evidence 31P NMR, 18O labeling, and metabolite assays in AK1 knockout hearts under ischemia-reperfusion

    PMID:12124227

    Open questions at the time
    • Identity and regulation of upregulated AK isoforms not detailed
  7. 2003 High

    Testing AK1's contribution to muscle ATPase fueling, double knockout with M-CK demonstrated that AK1 phosphotransfer supports phosphoryl delivery to the actomyosin ATPase and total ATP turnover under load.

    Evidence 18O labeling, in vitro actomyosin complex assay, and metabolite measurements in M-CK/AK1 double-knockout skeletal muscle

    PMID:12730234

    Open questions at the time
    • Relative contribution of AK1 alone versus M-CK not separated
    • Mechanism of phosphoryl channeling to ATPase not structurally defined
  8. 2004 High

    Characterizing the gene's two products, alternative promoter/polyadenylation usage was shown to yield cytosolic AK1 and membrane-bound AK1beta, the latter activating KATP channels, linking AK1 phosphotransfer to membrane excitability.

    Evidence Northern analysis, transfection localization, in vitro phosphorylation, and patch-clamp of recombinant KATP channels

    PMID:14977170

    Open questions at the time
    • Endogenous tissue distribution of AK1beta not mapped
    • Direct channel interaction versus local nucleotide effect not distinguished
  9. 2005 High

    Directly measuring the metabolic cost of AK1 loss in muscle revealed large free ADP accumulation during fatiguing contractions, yet fatigue profiles were unchanged, indicating redundancy in energetic buffering.

    Evidence 31P NMR of in situ contracting gastrocnemius in AK1 knockout mice

    PMID:15689408

    Open questions at the time
    • Compensating buffering systems not identified in this assay
  10. 2007 High

    Connecting AK1 to vascular function, knockout studies showed AK1 deletion uncouples contractility from coronary flow and that AK1beta-facilitated adenosine production, restorable pharmacologically, drives post-ischemic coronary reflow.

    Evidence 18O-assisted 31P NMR, coronary flow measurement, and adenosine rescue in AK1 knockout hearts

    PMID:17704060

    Open questions at the time
    • Step linking AK1beta to adenosine-producing enzymes not defined
    • AK1beta-specific genetic ablation not performed
  11. 2023 Medium

    Identifying a context-specific binding partner, ODF4 was shown to co-IP with AK1 and be required for AK1 retention in sperm flagella, linking AK1 localization to flagellar morphology and male fertility.

    Evidence Reciprocal Co-IP, Odf4 knockout/rescue mouse model, immunolocalization, and fertility assays

    PMID:36804949

    Open questions at the time
    • Single lab
    • Whether ODF4 binds AK1 directly versus within a complex not resolved
    • Functional role of flagellar AK1 not directly tested
  12. 2024 Medium

    Defining pharmacological modulation, dinucleoside polyphosphates including Ap5A were shown to potently inhibit human AK1 in vitro, providing chemical tools and structural binding models.

    Evidence In vitro enzymatic inhibition with purified hAK1, molecular docking, and QSAR analysis

    PMID:38744169

    Open questions at the time
    • No mutagenesis validation of docked binding mode
    • Cellular efficacy not tested

Open questions

Synthesis pass · forward-looking unresolved questions
  • How AK1beta is physically coupled to KATP channels and adenosine-generating enzymes at the sarcolemma, and whether the cytosolic and membrane isoforms have separable in vivo roles, remains unresolved.
  • No isoform-specific knockout reported
  • No structure of AK1beta-channel assembly
  • Direct adenosine-generation enzyme partner not identified

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016740 transferase activity 5 GO:0098772 molecular function regulator activity 1
Localization
GO:0005829 cytosol 2 GO:0005886 plasma membrane 1
Pathway
R-HSA-1430728 Metabolism 3 R-HSA-397014 Muscle contraction 2
Partners

Evidence

Reading pass · 13 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2000 AK1 knockout hearts show 94% reduction in total AK activity and 36% reduction in beta-phosphoryl transfer; under hypoxia, AK1-deficient hearts exhibit blunted AK-catalyzed phosphotransfer response, lowered intracellular ATP levels, increased Pi/ATP ratio, and suppressed adenosine generation, demonstrating AK1 is essential for maintaining myocardial energetic homeostasis under metabolic stress. [18O]phosphoryl oxygen analysis, 31P NMR, mass spectrometry in AK1 knockout mice hearts The Journal of biological chemistry High 11006295
2002 AK1 knockout hearts display accelerated loss of contractile force at ischemia onset and reduced nucleotide salvage on reperfusion (lower ATP, GTP, ADP, GDP); remaining ~40% beta-phosphoryl turnover is maintained via upregulation of other AK isoforms, creatine kinase flux, and glycolytic phosphotransfer, allowing postischemic contractile recovery to match wild-type levels. 31P NMR, 18O phosphoryl labeling, metabolite assays in AK1 knockout mouse hearts under ischemia-reperfusion American journal of physiology. Heart and circulatory physiology High 12124227
2003 Simultaneous disruption of cytosolic M-CK and AK1 isoenzymes in double-knockout mice severely reduces intracellular phosphotransfer communication and total ATP turnover under muscle load; in vitro actomyosin complex analysis showed hampered phosphoryl delivery to actomyosin ATPase, resulting in loss of contractile performance. 18O labeling of Pi and ATP, actomyosin complex in vitro assay, metabolite ratio measurements in M-CK/AK1 double-knockout skeletal muscle The Journal of biological chemistry High 12730234
2004 The AK1 gene produces two structurally distinct protein isoforms via alternative promoters and polyadenylation: cytosolic AK1 and membrane-bound AK1beta differing at the N-terminus. AK1beta localizes to the cellular membrane in transfected COS-1 and N2a cells, catalyzes ADP phosphorylation in vitro, and mediates AMP-induced activation of recombinant ATP-sensitive potassium channels in the presence of ATP. Northern analysis, immunohistochemistry, transfection in COS-1/N2a cells, in vitro phosphorylation assay, patch-clamp of recombinant KATP channels Molecular and cellular biochemistry High 14977170
2005 In AK1 knockout skeletal muscle during fatiguing tetanic contractions, free ADP accumulates to ~1.7 mM (directly measured by 31P NMR spectroscopy), a concentration severalfold greater than previously estimated; despite this large ADP accumulation and energy decline, AK1-/- and wild-type muscles exhibited similar fatigue profiles. 31P NMR spectroscopy of in situ contracting gastrocnemius muscle in AK1 knockout mice American journal of physiology. Cell physiology High 15689408
2007 AK1 knockout disrupts synchrony between Pi turnover at ATP-consuming sites and gamma-ATP exchange at synthesis sites; AK1 deletion blunts vascular AK phosphotransfer, compromises the contractility-coronary flow relationship, and precipitates inadequate coronary reflow post-ischemia. The sarcolemma-associated splice variant AK1beta facilitates adenosine production—a function lost in AK1 null mice—and adenosine treatment rescues post-ischemic coronary flow to wild-type levels. 18O-assisted 31P NMR in AK1 knockout hearts, coronary flow measurements, adenosine rescue experiment The Journal of biological chemistry High 17704060
1988 In yeast Saccharomyces cerevisiae, disruption of the ADK1 (AK1 ortholog) gene is needed for normal cell proliferation but is not essential for viability; extracts of disrupted cells retain ~10% wild-type AK enzymatic activity, indicating existence of additional AK isozymes. 31P NMR of mutant cells shows a significant decrease in nucleoside triphosphate levels. Gene disruption, immunological assay, 31P NMR of yeast cell suspensions The Journal of biological chemistry High 2848829
1997 A homozygous A→G substitution at codon 164 (Tyr→Cys) of the human AK1 gene results in spectrophotometrically undetectable erythrocyte adenylate kinase activity and is associated with congenital chronic hemolytic anemia, establishing this residue as critical for AK1 enzymatic function. PCR-SSCP, Sanger sequencing of AK1 gene, spectrophotometric AK activity assay in patient red blood cells British journal of haematology Medium 9432020
1999 A nonsense homozygous mutation at codon 107 (Arg→Stop, CGA→TGA) in the AK1 gene produces a truncated 107-amino-acid protein with complete loss of AK activity, causing chronic hemolytic anemia and psychomotor impairment, defining Arg107 as essential for functional AK1 protein. cDNA sequencing of AK1, functional AK activity assays in patient erythrocytes British journal of haematology Medium 10233365
1990 AK1 isoenzyme localizes to the cytosol of bovine skeletal muscle, heart, aorta, and brain (isoelectric focusing pI ≥ 9 and 8.6), distinct from mitochondrial AK2 (pI 7.9 and 7.1 in liver/kidney), as confirmed by immunostaining with anti-AK1 monoclonal antibody. Partial purification established apparent Mr of 23.5 kDa for cytosolic AK1. Isoelectric focusing, immunostaining with monoclonal antibody, chromatofocusing, partial protein purification Enzyme Medium 2261892
2023 ODF4 co-immunoprecipitates with AK1 and AK2 in mouse spermatozoa; in Odf4-/- sperm, AK1 and AK2 are reduced and flagellar shape is abnormal (hairpin flagellum with large cytoplasmic droplet), causing male infertility. Restoration of Odf4 rescues the abnormalities, establishing ODF4 as a binding partner required for proper AK1 localization/retention in sperm flagella. Co-immunoprecipitation, Odf4 knockout and rescue mouse model, immunolocalization, fertility assays Scientific reports Medium 36804949
2024 Dinucleoside polyphosphate derivatives inhibit human AK1 catalytic activity in vitro; Ap5A shows the strongest inhibition (IC50 < 1 µM). Molecular docking maps binding of these compounds to hAK1, and QSAR modeling predicts inhibitory potency based on structural features. In vitro enzymatic inhibition assays with purified human AK1, molecular docking, QSAR analysis Bioorganic chemistry Medium 38744169
2022 DARTS technology combined with LC-MS identified AK1 as a brain protein target of ginsenosides; biolayer interferometry confirmed direct binding of protopanaxadiol (PPD) to His-AK1 fusion protein (KD ≈ 8.52×10−5 mol/L), and molecular docking showed hydrogen bond interactions at the AK1 binding site. DARTS/LC-MS screening, biolayer interferometry with purified His-AK1 fusion protein, molecular docking Zhongguo Zhong yao za zhi Low 35343162

Source papers

Stage 0 corpus · 49 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1976 Localisation of the human ABO: Np-1: AK-1 linkage group by regional assignment of AK-1 to 9q34. Human genetics 105 184030
2000 Compromised energetics in the adenylate kinase AK1 gene knockout heart under metabolic stress. The Journal of biological chemistry 69 11006295
2020 Cultivating Chlorella sorokiniana AK-1 with swine wastewater for simultaneous wastewater treatment and algal biomass production. Bioresource technology 64 32004812
1998 Effect of Temperature on Adhesion of Vibrio Strain AK-1 to Oculina patagonica and on Coral Bleaching. Applied and environmental microbiology 61 16349542
2014 AK-1, a specific SIRT2 inhibitor, induces cell cycle arrest by downregulating Snail in HCT116 human colon carcinoma cells. Cancer letters 60 25312940
2002 Adenylate kinase AK1 knockout heart: energetics and functional performance under ischemia-reperfusion. American journal of physiology. Heart and circulatory physiology 58 12124227
1976 Evidence for the assignment of the loci AK1, AK3 and ACONs to chromosome 9 in man. Annals of human genetics 58 182062
1976 Assignment of the AK1:Np:ABO linkage group to human chromosome 9. Proceedings of the National Academy of Sciences of the United States of America 53 176661
2003 Impaired intracellular energetic communication in muscles from creatine kinase and adenylate kinase (M-CK/AK1) double knock-out mice. The Journal of biological chemistry 49 12730234
1983 delta-Aminolevulinatedehydrase: synteny with ABO-AK1-ORM (and assignment to chromosome 9). Clinical genetics 45 6839527
2012 Inhibition of Sirtuin 2 with Sulfobenzoic Acid Derivative AK1 is Non-Toxic and Potentially Neuroprotective in a Mouse Model of Frontotemporal Dementia. Frontiers in pharmacology 43 22416232
2007 Defective metabolic signaling in adenylate kinase AK1 gene knock-out hearts compromises post-ischemic coronary reflow. The Journal of biological chemistry 43 17704060
1983 Complementation mapping in microcell hybrids: localization of Fpgs and Ak-1 on Mus musculus chromosome 2. Somatic cell genetics 43 6687641
1978 Segregation of ABO, AK1 and ACONs in families with abnormalities of chromosome 9. Annals of human genetics 41 204246
1988 Analysis and in vivo disruption of the gene coding for adenylate kinase (ADK1) in the yeast Saccharomyces cerevisiae. The Journal of biological chemistry 37 2848829
2005 31P-NMR observation of free ADP during fatiguing, repetitive contractions of murine skeletal muscle lacking AK1. American journal of physiology. Cell physiology 34 15689408
1977 Mapping AK1, ACONs, and AK3 to chromosome 9 in man employing and X/9 translocation and somatic cell hybrids. Cytogenetics and cell genetics 25 196813
1982 Assignment of ADA, ITPA, AK1, and AK2 to Chinese hamster chromosomes. Genetic and structural evidence for the conservation of mammalian autosomal synteny. The Journal of heredity 24 7153494
2021 Semi-batch cultivation of Chlorella sorokiniana AK-1 with dual carriers for the effective treatment of full strength piggery wastewater treatment. Bioresource technology 23 33548816
2004 Two structurally distinct and spatially compartmentalized adenylate kinases are expressed from the AK1 gene in mouse brain. Molecular and cellular biochemistry 23 14977170
2017 Genome-Wide Mutation Rate Response to pH Change in the Coral Reef Pathogen Vibrio shilonii AK1. mBio 22 28830944
1999 A case of complete adenylate kinase deficiency due to a nonsense mutation in AK-1 gene (Arg 107 --> Stop, CGA --> TGA) associated with chronic haemolytic anaemia. British journal of haematology 20 10233365
1997 Severe erythrocyte adenylate kinase deficiency due to homozygous A-->G substitution at codon 164 of human AK1 gene associated with chronic haemolytic anaemia. British journal of haematology 20 9432020
2020 Correlation Analysis between AK1 mRNA Expression and Inosine Monophosphate Deposition in Jingyuan Chickens. Animals : an open access journal from MDPI 19 32155715
2016 AK-1, a SIRT2 inhibitor, destabilizes HIF-1α and diminishes its transcriptional activity during hypoxia. Cancer letters 19 26808575
2018 Insights into Brevibacillus borstelensis AK1 through Whole Genome Sequencing: A Thermophilic Bacterium Isolated from a Hot Spring in Saudi Arabia. BioMed research international 15 29992154
1994 Genetic linkage analysis of the Ak1, Col5a1, Epb7.2, Fpgs, Grp78, Pbx3, and Notch1 genes in the region of mouse chromosome 2 homologous to human chromosome 9q. Genomics 14 8088777
1977 Family studies with the chromosome 9 markers ABO, AK1, ACONs and 9qh. Annals of human genetics 13 200168
2020 AK-1, a Sirt2 inhibitor, alleviates carbon tetrachloride-induced hepatotoxicity in vivo and in vitro. Toxicology mechanisms and methods 11 32063085
1994 Distribution of ACP1, AK1 and ALAD polymorphisms in northern Portugal. Gene geography : a computerized bulletin on human gene frequencies 9 7547603
1989 AK1, PGD, GC and HP frequencies in the Basque population: a review. Gene geography : a computerized bulletin on human gene frequencies 9 2487055
2023 The association of ODF4 with AK1 and AK2 in mice is essential for fertility through its contribution to flagellar shape. Scientific reports 7 36804949
2007 Homology model of a novel thermostable xylanase from Bacillus subtilis-AK1. Journal of biomolecular structure & dynamics 6 17937492
1990 Multiforms of mammalian adenylate kinase and its monoclonal antibody against AK1. Enzyme 6 2261892
2021 Rare hereditary nonspherocytic hemolytic anemia caused by a novel homozygous mutation, c.301C > A, (Q101K), in the AK1 gene in an Indian family. BMC medical genomics 5 34321014
2012 Ak(1) genetic polymorphism and season of conception. European journal of obstetrics, gynecology, and reproductive biology 4 23146316
1994 A linkage study of affective disorder with DNA markers for the ABO-AK1-ORM linkage group near the dopamine beta hydroxylase gene. Biological psychiatry 4 7811839
2024 Gamma irradiation in modulating arsenic bioremediation potential of Pseudomonas sp. AK1 and AK9. International journal of radiation biology 2 38657135
2023 Molecular characterization and immunological properties of Echinococcus granulosus sensu stricto (G1) ADK1 and ADK8. Parasitology research 2 37148368
2019 Genomic comparison of anoxybacillus flavithermus AK1, a thermophilic bacteria, with other strains. Enzyme and microbial technology 2 31615674
1991 Mapping of silver fox genes: chromosomal localization of the genes for GOT2, AK1, ALDOC, ACP1, ITPA, PGP, and BLVR. Cytogenetics and cell genetics 2 1647290
1991 PCR-based detection of polymorphic DdeI and KpnI sites in intron 5 of the adenylate kinase (AK1) gene. Nucleic acids research 2 1673557
2024 Synthesis, kinetic studies, and QSAR of dinucleoside polyphosphate derivatives as human AK1 inhibitors. Bioorganic chemistry 1 38744169
2008 Pig KALRN, MYH1, MLC2V, SNX13, AK1, and PPIA loci RH mapping and chromosome position refining. Genetics and molecular research : GMR 1 19048477
1990 [Mapping of the silver fox genome. III. Determination of the chromosomal localization of the GOT2, AK1, ALDOC, ACP1, ITPA, PGP and BLVR genes]. Genetika 1 2074010
2026 Complete genome sequence of Thermus scotoductus AK-1 isolated from an Arctic hydrothermal site in Alaska. Microbiology resource announcements 0 42240388
2025 Novel AK-1 gene variants combined with thalassemia causing rare hereditary non-spherocytic hemolytic anemia in a Chinese family. Annals of hematology 0 40016400
2022 [Discovery and confirmation of protein action site AK1 of ginsenosides in brain based on DARTS technology]. Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica 0 35343162
1978 [Rare electrophoretic variants of the proteins adenylate kinase 1, phosphoglucomutase 1 and 2, and transferrin (AK1, PGM1, PGM2, Tf) in two populations of French Guiana]. Comptes rendus hebdomadaires des seances de l'Academie des sciences. Serie D: Sciences naturelles 0 210969

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