Affinage

ABHD10

Palmitoyl-protein thioesterase ABHD10, mitochondrial · UniProt Q9NUJ1

Length
306 aa
Mass
33.9 kDa
Annotated
2026-06-09
13 papers in source corpus 8 papers cited in narrative 8 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

ABHD10 is a serine hydrolase that operates as a protein S-depalmitoylase in the mitochondrial matrix, controlling mitochondrial redox homeostasis and lipid-related function across multiple tissues (PMID:31740833, PMID:41285782). Its catalytic mechanism rests on a serine nucleophile, established by covalent serine-directed inhibitors and activity-based protein profiling that classify it as an active serine hydrolase (PMID:22400490). In its depalmitoylase role, ABHD10 removes palmitoyl groups from peroxiredoxin-5 (PRDX5) at the active-site cysteine (Cys100), thereby preserving PRDX5 antioxidant capacity and limiting mitochondrial oxidative stress (PMID:31740833, PMID:37400491). In testis, ABHD10 is a mitochondrial matrix depalmitoylase essential for sperm mitochondrial sheath formation and male fertility, acting on substrates including SPATA19, GK2, PDHX, NDUFV1, and SDHB, with direct physical interactions demonstrated for SPATA19, GK2, and PDHX (PMID:41285782). Beyond its depalmitoylase activity, ABHD10 also functions in human liver as an acyl-glucuronide hydrolase, deglucuronidating mycophenolic acid acyl-glucuronide and probenecid acyl-glucuronide (PMID:22294686, PMID:25217485). ABHD10 expression is transcriptionally repressed by ELK-3 downstream of TGFβ1/EGF signaling, linking signaling-driven loss of ABHD10 to increased PRDX5 palmitoylation and hepatocyte oxidative damage (PMID:37400491).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2012 High

    Established the first defined enzymatic function of ABHD10 by identifying it as the liver enzyme that hydrolyzes mycophenolic acid acyl-glucuronide, resolving which protein clears this reactive metabolite.

    Evidence Purification from human liver cytosol, sequence confirmation, and recombinant expression in Sf9 cells with kinetic and chemical inhibition profiling

    PMID:22294686

    Open questions at the time
    • Did not define catalytic residues or structure
    • Did not address whether deglucuronidation is the physiological role versus an in vitro activity
  2. 2012 Medium

    Confirmed ABHD10 is a bona fide serine hydrolase and provided a selective covalent inhibitor, supplying chemical tools to interrogate its activity in cells.

    Evidence Competitive activity-based protein profiling and aza-β-lactam (ABL303) covalent inactivation in vitro and in living cells

    PMID:22400490

    Open questions at the time
    • Did not identify endogenous substrates
    • Single lab
  3. 2014 Medium

    Extended ABHD10's acyl-glucuronide hydrolase role to a second substrate class, showing it, rather than carboxylesterases, deglucuronidates probenecid acyl-glucuronide.

    Evidence Recombinant enzyme assay and chemical inhibition comparison against human liver homogenates

    PMID:25217485

    Open questions at the time
    • Did not establish in vivo relevance
    • Single lab; relied on inhibition-profile matching rather than genetic knockout
  4. 2014 Low

    Independently corroborated ABHD10 as an active serine hydrolase using a distinct inhibitor chemotype in intact cells.

    Evidence Rocaglate-derived β-lactone inhibition by ABPP in vitro and in PC3 cells

    PMID:24447064

    Open questions at the time
    • Single ABPP readout with no mechanistic follow-up specific to ABHD10 function
    • No substrate or pathway link
  5. 2019 High

    Reframed ABHD10 as a protein S-depalmitoylase by identifying PRDX5 active-site cysteine palmitoylation as a regulated substrate, connecting the enzyme to mitochondrial redox control.

    Evidence Mitochondrial-targeted depalmitoylase inhibition and PRDX5 substrate identification with active-site cysteine readout

    PMID:31740833

    Open questions at the time
    • Did not enumerate the full substrate repertoire
    • Did not resolve how ABHD10 is targeted to specific palmitoylated cysteines
  6. 2023 Medium

    Placed ABHD10 within a signaling axis by showing ELK-3 directly represses its promoter downstream of TGFβ1/EGF, linking ABHD10 loss to PRDX5 Cys100 palmitoylation and liver injury.

    Evidence Promoter binding assays, site-specific palmitoylation readout, and Abhd10 overexpression rescue in an alcoholic liver disease mouse model

    PMID:37400491

    Open questions at the time
    • Did not define upstream signaling kinetics of ELK-3 activation
    • Single lab
  7. 2025 High

    Defined an essential in vivo role for ABHD10 in spermatogenesis, identifying it as a testis mitochondrial matrix depalmitoylase acting on multiple sheath and metabolic substrates.

    Evidence Knock-in and knockout mice, super-resolution and electron microscopy, mitochondrial acyl-biotin exchange mass spectrometry, co-immunoprecipitation, and proximity labeling

    PMID:41285782

    Open questions at the time
    • Mechanism by which substrate hyper-palmitoylation disrupts sheath assembly not fully resolved
    • Relative contribution of each substrate to the fertility phenotype unclear
  8. 2026 Medium

    Implicated ABHD10 in cellular senescence and mitochondrial lipid handling through a new interactor, broadening its functional context beyond redox and fertility.

    Evidence Co-immunoprecipitation of ABHD10–KCMF1 and ABHD10 silencing in HEI-OC1 cells with senescence, ROS, membrane potential, and lipid readouts

    PMID:42206676

    Open questions at the time
    • Functional significance and directionality of the KCMF1 complex not defined
    • Single lab; correlative cellular readouts

Open questions

Synthesis pass · forward-looking unresolved questions
  • How a single mitochondrial matrix serine hydrolase reconciles distinct activities (protein S-depalmitoylation versus acyl-glucuronide hydrolysis) and selects substrates across tissues remains unresolved.
  • No structural model of substrate or active-site recognition in the corpus
  • Mechanism of substrate selectivity across tissues unknown
  • Relationship between its cytosolic/liver glucuronide activity and matrix depalmitoylase activity not integrated

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016787 hydrolase activity 3 GO:0140096 catalytic activity, acting on a protein 2
Localization
GO:0005739 mitochondrion 2
Pathway
R-HSA-1430728 Metabolism 2 R-HSA-8953897 Cellular responses to stimuli 2

Evidence

Reading pass · 8 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2019 ABHD10 is a resident mitochondrial S-depalmitoylase that removes palmitoyl groups from peroxiredoxin-5 (PRDX5) at its nucleophilic active site cysteine residue, directly regulating PRDX5 antioxidant capacity and mitochondrial redox homeostasis. Mitochondrial-targeted APT inhibitor treatment, identification of PRDX5 as ABHD10 substrate, active site cysteine palmitoylation readout linked to antioxidant function Nature chemical biology High 31740833
2012 ABHD10 is the enzyme responsible for deglucuronidation (hydrolysis) of mycophenolic acid acyl-glucuronide (AcMPAG) in human liver; purified from human liver cytosol by column chromatography, confirmed by amino acid sequence analysis, and recombinant ABHD10 expressed in Sf9 cells demonstrated this activity with Km of ~100.7 µM. Activity was inhibited by PMSF, AgNO3, CdCl2, CuCl2, bis-p-nitrophenylphosphate, and DTNB, consistent with a serine hydrolase mechanism. Enzyme purification from human liver cytosol, amino acid sequence analysis, recombinant expression in Sf9 cells with kinetic assay, chemical inhibition profile The Journal of biological chemistry High 22294686
2014 ABHD10 substantially catalyzes deglucuronidation of probenecid acyl glucuronide (PRAG) in human liver, whereas carboxylesterases do not; recombinant ABHD10 showed activity matching inhibition profiles of human liver homogenates, and ABHD10 suppresses net PRAG formation from probenecid via multiple UGT enzymes (UGT1A1, UGT1A9, UGT2B7). Recombinant ABHD10 enzyme assay, chemical inhibition comparison with human liver homogenates, PMSF-based inhibition of endogenous activity Drug metabolism and disposition: the biological fate of chemicals Medium 25217485
2012 ABHD10 is a serine hydrolase; activity-based protein profiling (ABPP) identified it as a serine hydrolase target, and the aza-β-lactam ABL303 potently and selectively inactivated ABHD10 (IC50 ≈ 30 nM) in vitro and in living cells via covalent acylation of the enzyme's serine nucleophile. Competitive activity-based protein profiling (ABPP) in cell and tissue proteomes; medicinal chemistry optimization; in vitro and cell-based inhibition assays Journal of the American Chemical Society Medium 22400490
2023 The transcription factor ELK-3 directly binds to the ABHD10 promoter to inhibit its transactivation; TGFβ1 and EGF signaling induce ABHD10 downregulation via ELK-3, leading to enhanced S-palmitoylation of PRDX5 Cys100, increased oxidative stress, and disrupted hepatocyte function. Ectopic Abhd10 overexpression ameliorated liver damage in ALD model mice. Promoter binding assays (ELK-3 to ABHD10 promoter), in vitro cell signaling experiments, site-specific palmitoylation (Cys100) readout, in vivo mouse ALD model with Abhd10 overexpression Communications biology Medium 37400491
2025 ABHD10 is a mitochondrial matrix S-depalmitoylase specifically expressed in testis that is essential for sperm mitochondrial sheath formation and male fertility; ABHD10 deficiency causes hyper-palmitoylation of SPATA19, GK2, PDHX, NDUFV1, and SDHB, and ABHD10 physically interacts with SPATA19, GK2, and PDHX as identified by co-immunoprecipitation and proximity labeling. HA-tagged knock-in mice, Abhd10-null mice, super-resolution fluorescence imaging, electron microscopy, mitochondrial proteomic analysis, mass spectrometry-based mitochondrial acyl-biotin exchange assay, co-immunoprecipitation, proximity labeling Nature communications High 41285782
2026 ABHD10 interacts with KCMF1 as shown by co-immunoprecipitation, forming a complex that may regulate mitochondrial lipid metabolism; silencing ABHD10 in senescent cochlear cells reduced P21 and P16 levels, decreased ROS, improved mitochondrial membrane potential, and lowered lipid droplet formation and triglyceride/fatty acid levels. Co-immunoprecipitation (ABHD10–KCMF1), ABHD10 silencing in HEI-OC1 cells with senescence markers, ROS measurement, mitochondrial membrane potential assay, lipid droplet/lipid quantification Journal of cellular physiology Medium 42206676
2014 A rocaglate-derived β-lactone inhibited serine hydrolase activity of ABHD10 both in vitro and in intact PC3 cells, as determined by activity-based protein profiling, confirming ABHD10 is an active serine hydrolase. Activity-based protein profiling (ABPP) in vitro and in PC3 cells Journal of the American Chemical Society Low 24447064

Source papers

Stage 0 corpus · 13 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2012 The emerging role of human esterases. Drug metabolism and pharmacokinetics 192 22813719
2019 ABHD10 is an S-depalmitoylase affecting redox homeostasis through peroxiredoxin-5. Nature chemical biology 111 31740833
2012 Competitive activity-based protein profiling identifies aza-β-lactams as a versatile chemotype for serine hydrolase inhibition. Journal of the American Chemical Society 45 22400490
2012 Human α/β hydrolase domain containing 10 (ABHD10) is responsible enzyme for deglucuronidation of mycophenolic acid acyl-glucuronide in liver. The Journal of biological chemistry 33 22294686
2014 Remodeling natural products: chemistry and serine hydrolase activity of a rocaglate-derived β-lactone. Journal of the American Chemical Society 29 24447064
2015 Facile synthesis of borofragments and their evaluation in activity-based protein profiling. Chemical communications (Cambridge, England) 25 25633248
2014 An orphan esterase ABHD10 modulates probenecid acyl glucuronidation in human liver. Drug metabolism and disposition: the biological fate of chemicals 20 25217485
2022 MiR-19b-3p regulated by BC002059/ABHD10 axis promotes cell apoptosis in myocardial infarction. Biology direct 7 35978367
2023 The Elk-3 target Abhd10 ameliorates hepatotoxic injury and fibrosis in alcoholic liver disease. Communications biology 5 37400491
2015 [Role of Human Orphan Esterases in Drug-induced Toxicity]. Yakugaku zasshi : Journal of the Pharmaceutical Society of Japan 5 26521872
2026 The ABHD10-KCMF1 Complex Mitigates Cochlear Aging by Regulating Mitochondrial Lipid Metabolism. Journal of cellular physiology 0 42206676
2025 The S-depalmitoylase ABHD10 is essential for sperm mitochondrial sheath formation and male fertility. Nature communications 0 41285782
2024 Use of mendelian randomization to assess the causal associations of circulating plasma proteins with 12-lead ECG parameters. International immunopharmacology 0 39486179

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