| 2014 |
ZMYND11 specifically recognizes H3K36me3 on histone variant H3.3 (H3.3K36me3) through its tandem bromo-PWWP domains; the PWWP domain provides an aromatic cage for trimethyl-lysine binding, while the H3.3-specific Ser31 residue is encapsulated in a composite pocket formed by the bromo-PWWP domains together. |
Structural studies (crystal structure), chromatin immunoprecipitation followed by sequencing (ChIP-seq), in vitro binding assays |
Nature |
High |
24590075
|
| 2014 |
ZMYND11 functions as an unconventional transcriptional co-repressor by modulating RNA polymerase II at the elongation stage; genome-wide occupancy requires pre-deposition of H3.3K36me3 in gene bodies. |
ChIP-seq, RNA polymerase II elongation assays, loss-of-function experiments in cancer cells |
Nature |
High |
24590075
|
| 2014 |
ZMYND11 (BS69) associates with RNA splicing regulators including U5 snRNP components (e.g., EFTUD2) and promotes intron retention by antagonizing EFTUD2 through physical interaction; this regulation also depends on binding to H3K36me3-decorated chromatin. |
Co-immunoprecipitation, RNA sequencing, biochemical and genetic epistasis experiments |
Molecular cell |
High |
25263594
|
| 1995 |
BS69 (ZMYND11) was identified as a nuclear phosphoprotein that interacts specifically with the conserved region 3 (CR3) of the adenovirus 5 289R E1A protein and inhibits E1A-mediated transcriptional transactivation; interaction was confirmed by co-immunoprecipitation in adenovirus-transformed 293 cells. |
Co-immunoprecipitation, transactivation reporter assays, yeast two-hybrid |
The EMBO journal |
High |
7621829
|
| 2000 |
BS69 mediates transcriptional repression at least in part through interaction with the co-repressor N-CoR via its MYND domain; expression of E1A inhibits repression mediated by BS69. |
Co-immunoprecipitation, transcriptional reporter assays, domain deletion analysis |
Oncogene |
Medium |
10734313
|
| 2001 |
The C-terminal MYND domain of BS69 binds to viral (E1A, EBNA2) and cellular (MGA) proteins through a conserved PXLXP motif; viral proteins compete with MGA for BS69 MYND binding in a PXLXP-dependent manner. |
GST pulldown, yeast two-hybrid, co-immunoprecipitation, mutagenesis |
The Journal of biological chemistry |
High |
11733528
|
| 2001 |
BS69 interacts with the carboxyl terminus of c-Myb via its MYND domain and inhibits c-Myb transcriptional activity in a dose-dependent manner; direct interaction was demonstrated in vitro, and 289R E1A can relieve BS69-mediated repression of c-Myb. |
Yeast two-hybrid, in vitro GST pulldown, transcriptional reporter assays |
Oncogene |
Medium |
11244510
|
| 1998 |
BRAM1, an alternatively spliced isoform of BS69/ZMYND11, is localized to the cytoplasm (unlike nuclear BS69) and specifically binds to BMPR-IA (BMP type IA receptor) via its C-terminal half. |
Yeast two-hybrid, co-immunoprecipitation in mammalian cells, subcellular localization by cell fractionation/immunofluorescence |
Genes to cells |
Medium |
9663660
|
| 2006 |
BS69's MYND domain acts as a specific adaptor bridging EBV LMP1 and TRAF6 to activate the JNK pathway; the MYND domain binds LMP1 C-terminus while a separate region binds TRAF6; LMP1 promotes the BS69-TRAF6 complex, and knockdown of BS69 specifically inhibits LMP1-induced JNK activation but not TNF-alpha-induced JNK activation. |
Co-immunoprecipitation, siRNA knockdown, JNK kinase assays, chimeric protein rescue |
Molecular and cellular biology |
High |
16382137
|
| 2006 |
BS69 associates with chromatin remodeling factors including ATP-dependent helicases, histone deacetylases, histone methyltransferases, and the transcription factor E2F6; BS69 is nuclear and associates with chromatin and mitotic chromosomes. |
Endogenous protein immunoprecipitation, mass spectrometry, chromatin fractionation, immunofluorescence |
The Journal of biological chemistry |
Medium |
16565076
|
| 2007 |
BS69 is involved in cellular senescence through the p53-p21Cip1 pathway; knockdown of BS69 in primary fibroblasts elevates p21Cip1 and induces premature senescence that is bypassed by knockdown of p53 or p21Cip1 (but not p16 or Rb); BS69 forms complexes with p53 and p400 and associates with the p21Cip1 promoter via p53. |
siRNA knockdown, double knockdown epistasis, chromatin immunoprecipitation, co-immunoprecipitation, senescence assays |
EMBO reports |
High |
17721438
|
| 2009 |
BS69 undergoes SUMO modification; it interacts with SUMO E3 ligase PIAS1 and SUMO E2 enzyme Ubc9 through distinct domains, and PIAS1 significantly increases BS69 SUMOylation; the PHD domain is required for proper localization, sumoylation, and function of BS69. |
Co-immunoprecipitation, in vivo SUMOylation assay, domain mutant analysis, immunofluorescence |
Experimental cell research |
Medium |
19766626
|
| 2009 |
BS69 negatively regulates LMP1-mediated NF-κB activation by decreasing complex formation between LMP1 and TRADD; manipulation of BS69 expression modulates IκBα degradation and IL-6 production. |
siRNA knockdown, overexpression, co-immunoprecipitation, NF-κB reporter assay |
FEBS letters |
Medium |
19379743
|
| 2009 |
BS69 translocates from the nucleus to the cytoplasm upon dsRNA stimulation or TICAM-1 overexpression, where it is incorporated into the TICAM-1 signalosome complex and acts as a positive regulator of NF-κB and IRF-3 activation and IFN-β induction. |
Yeast two-hybrid, co-immunoprecipitation, confocal microscopy, siRNA knockdown, reporter assays |
European journal of immunology |
Medium |
19795416
|
| 2010 |
BS69 directly interacts with the LMP1/CTAR1 domain and with TRAF3, and BS69-mediated suppression of LMP1/CTAR1-induced NF-κB activation requires TRAF3. |
Co-immunoprecipitation, siRNA knockdown, NF-κB reporter assays |
FEBS letters |
Medium |
20138174
|
| 2013 |
The BS69 MYND domain folds as a ββα zinc binding domain (C4-C2HC topology); mutational analysis of charged residues flanking the MYND fold reveals they are required for binding to viral (E1A, EBNA2) and cellular partners, suggesting a distinct binding mode from related MYND domains. |
NMR structure (DEAF-1 MYND), homology modeling, mutagenesis, NMR titration binding assays |
PloS one |
Medium |
23372760
|
| 2016 |
The BS69/ZMYND11 coiled-coil domain self-associates to bring two MYND domains into proximity, enhancing binding to EBNA2 PXLXP motifs; the CC-MYND homodimer synergistically binds the two PXLXP motifs in EBNA2 CR7 and CR8; EBNA2 also down-regulates BS69 expression in EBV-infected B cells. |
Crystal structure of CC-MYND/EBNA2 complex, ITC binding analysis, mutagenesis, reporter assays, ectopic expression experiments |
PLoS pathogens |
High |
26845565
|
| 2017 |
ZMYND11 specifically interacts with ETS2 (but not ETS1) through the ETS2 N-terminus and attenuates ETS2 transcriptional activation, causing ETS2 to repress rather than activate a cell migration gene expression program; this interaction underlies the context-dependent oncogenic vs. tumor-suppressive function of ETS2. |
Co-immunoprecipitation, ETS1/ETS2 cistrome comparison (ChIP-seq), deletion mapping, reporter assays |
Nucleic acids research |
Medium |
28119415
|
| 2019 |
Type 2 EBV EBNA2 contains a third PXLXP motif that allows binding of an additional BS69 CC-MYND dimer; SAXS shows three BS69CC-MYND dimers bind two molecules of type 2 EBNA2 TAD; mutation of the third BS69-binding motif in type 2 EBNA2 improved B-cell growth and transcriptional activation. |
Pull-down assays, small-angle X-ray scattering (SAXS), mutagenesis, transcriptional and B-cell growth assays |
PLoS pathogens |
High |
31283782
|
| 2014 |
MAGE-C2/HCA587 interacts with BS69 and promotes its ubiquitination and proteasomal degradation; knockdown of HCA587 increases BS69 protein levels, and overexpression of HCA587 enhances LMP1-induced NF-κB activation consistent with reduced BS69 levels. |
Co-immunoprecipitation, mass spectrometry, GST pulldown, ubiquitination assay, proteasome inhibitor treatment |
Biochemical and biophysical research communications |
Medium |
24866244
|
| 2005 |
BS69 inhibits ubiquitination of adenovirus E1A protein through its MYND domain; BS69 binding to E1A protects E1A from proteasomal degradation; MYND domain mutants that cannot bind E1A fail to inhibit E1A ubiquitination. |
In vivo ubiquitination assay, proteasome inhibitor experiments, MYND domain mutagenesis, co-immunoprecipitation |
Biochemical and biophysical research communications |
Medium |
16300738
|
| 2021 |
The ZMYND11-MBTD1 fusion oncoprotein recruits the NuA4/TIP60 histone acetyltransferase complex to cis-regulatory elements of pro-leukemic genes via the ZMYND11 PWWP domain's H3K36me3 binding, sustaining active chromatin enriched in histone acetylation; both TIP60 interaction and the PWWP H3K36me3-binding are required for oncogenesis. |
ChIP-seq, ATAC-seq, systematic mutagenesis, co-immunoprecipitation, in vivo leukemia model, gene expression profiling |
Nature communications |
High |
33594072
|
| 2022 |
ZMYND11-MBTD1 is stably incorporated into the endogenous NuA4/TIP60 complex, mislocalizing it to the bodies of genes normally bound by ZMYND11; this leads to increased chromatin acetylation and altered gene transcription including on MYC, and alternative splicing changes. |
Biochemical co-purification/Co-IP, ChIP-seq, RNA-seq, comparison to individual fusion partners |
Cell reports |
High |
35705031
|
| 2024 |
ZMYND11 exhibits a non-canonical function as a nonhistone methylation reader: its MYND domain recognizes arginine-194-methylated HNRNPA1, retaining HNRNPA1 in the nucleus and preventing stress granule formation in the cytoplasm; ZMYND11 also counteracts HNRNPA1-driven increases in PKM2/PKM1 ratio; PRMT5 inhibition disrupts the ZMYND11-HNRNPA1 interaction. |
Co-immunoprecipitation, domain mutagenesis, subcellular fractionation, in vitro and in vivo tumor assays, pharmacological PRMT5 inhibition |
Signal transduction and targeted therapy |
Medium |
39341825
|
| 2024 |
USP53 deubiquitinase interacts with ZMYND11 via co-immunoprecipitation and catalyzes its deubiquitination and stabilization; the USP53 Cys-box domain (aa 33-50) is required for enzyme activity but not for ZMYND11 binding; loss of USP53 reduces ZMYND11 protein levels and promotes breast cancer cell growth. |
Co-immunoprecipitation, deubiquitination assay, loss-of-function and rescue experiments |
Biological procedures online |
Medium |
39044157
|
| 2025 |
ZMYND11 interacts with and inhibits the histone methyltransferase KMT2A (MLL1); a ZRSID-associated ZMYND11 point mutation abrogates this interaction; neuronal deletion of ZMYND11 causes upregulation of non-neuronal gene programs and reduced dendritic branching, effects attenuated by KMT2A inhibition with revumenib. |
Co-immunoprecipitation, point mutagenesis, degron-tagged mouse model, RNA-seq, dendritic morphology assay, pharmacological KMT2A inhibition |
bioRxivpreprint |
Medium |
41279818
|
| 2025 |
ZMYND11 regulates a brain-specific RNA isoform switch involving the splicing regulator RBFOX2; ZMYND11-deficient cortical neural stem cells upregulate inappropriate developmental pathways impairing neurogenesis, and similar splicing dysregulation is seen with other chromatin-related ASD risk genes. |
Human pluripotent stem cell differentiation model, RNA-seq, loss-of-function |
Nature communications |
Medium |
41068108
|
| 2026 |
Crystal structures of ZMYND11 WH, PHD, and CC-MYND domains reveal intermolecular zinc fingers (PHD domain) and redox-driven intermolecular disulfide bonds (CC-MYND domain) that regulate oligomeric state and substrate binding; the Bromo-PWWP domains cooperate with WH to bind nucleic acids and with PHD to bind histones; PHD and CC-MYND domains also interact with nucleic acid repair protein ALKBH6. |
Crystal structure determination, ITC, mutagenesis, co-immunoprecipitation |
Nucleic acids research |
High |
41591843
|
| 2025 |
In mouse neurons, ZMYND11 deficiency leads to upregulation of non-neuronal gene programs, reduced dendritic branching and spine density, and hyperactivity/abnormal motor behavior; Zmynd11 deficiency in embryos impairs neurogenesis by decreasing Epha2 expression, increasing H3K36me3 on the Epha2 promoter, and disrupting PI3K signaling; restoration of PI3K via Epha2 rescues neurogenesis defects. |
Conditional neuronal knockout mouse, degron model, ChIP for H3K36me3, RNA Pol II ChIP, Epha2 rescue experiments, behavioral assays |
Cell & bioscience |
Medium |
40281637
|