Affinage

WDTC1

WD and tetratricopeptide repeats protein 1 · UniProt Q8N5D0

Round 2 corrected
Length
677 aa
Mass
75.9 kDa
Annotated
2026-04-28
130 papers in source corpus 2 papers cited in narrative 2 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

WDTC1 is a conserved suppressor of fat accumulation that functions as a DDB1-CUL4-ROC1 (CRL4) substrate receptor (DCAF), coupling E3 ubiquitin ligase activity to transcriptional repression of adipogenic genes. Loss of the Drosophila ortholog adp increases triglyceride storage and promotes obesity, while gain-of-function specifically reduces the fat body, establishing WDTC1 as a dose-dependent regulator of lipid homeostasis (PMID:12717455). The CRL4^WDTC1 complex promotes histone H2AK119 monoubiquitylation at adipogenic loci; disruption of the WDTC1–DDB1 interface abolishes this chromatin mark and derepresses adipogenic gene expression, leading to enhanced triglyceride accumulation in 3T3-L1 cells (PMID:27113764).

Mechanistic history

Synthesis pass · year-by-year structured walk · 2 steps
  1. 2003 High

    Identification of adp/WDTC1 as a conserved anti-obesity gene resolved the question of whether a single locus could dominantly suppress fat storage in metazoans, establishing the functional framework for all subsequent mechanistic work.

    Evidence Drosophila loss-of-function mutants (increased triglyceride, extended starvation survival) and gain-of-function transgenics (fat body reduction)

    PMID:12717455

    Open questions at the time
    • Molecular mechanism of fat suppression was unknown
    • No mammalian cellular or biochemical confirmation at this stage
    • Direct target genes or pathways not identified
  2. 2016 High

    Demonstration that WDTC1 acts as a DCAF within the CRL4 E3 ligase to promote H2AK119 monoubiquitylation provided the molecular mechanism linking WDTC1 to transcriptional repression of adipogenic genes, explaining its anti-adipogenic activity.

    Evidence Co-IP of WDTC1–DDB1 interaction, mutagenesis of the binding interface, 3T3-L1 adipogenesis assays with triglyceride staining, and ChIP for H2AK119ub1

    PMID:27113764

    Open questions at the time
    • The direct substrate(s) ubiquitylated by CRL4^WDTC1 beyond histone H2A remain unidentified
    • Structural basis of WDTC1–DDB1 interaction and substrate recognition not resolved
    • In vivo mammalian loss-of-function phenotype (e.g., mouse knockout) not reported

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unknown how CRL4^WDTC1 is recruited to specific adipogenic gene loci, whether WDTC1 ubiquitylates non-histone substrates relevant to fat metabolism, and whether its anti-adipogenic function is conserved in vivo in mammals.
  • Locus-specific recruitment mechanism unknown
  • Non-histone substrates not explored
  • No mammalian in vivo genetic model reported

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 1
Localization
GO:0005634 nucleus 1
Pathway
GO:0140110 transcription regulator activity 1 R-HSA-392499 Metabolism of proteins 1 R-HSA-4839726 Chromatin organization 1
Partners
Complex memberships
CRL4^WDTC1 (DDB1-CUL4-ROC1-WDTC1)

Evidence

Reading pass · 2 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2003 The Drosophila adp gene, ortholog of human WDTC1, encodes a WD40/tetratricopeptide-repeat (TPR)-domain protein whose loss of function promotes increased triglyceride storage and obesity, while gain-of-function causes specific reduction of the fat body, establishing adp/WDTC1 as a conserved suppressor of fat accumulation. Drosophila genetics: loss-of-function mutant analysis (increased fat storage, extended starvation survival) and gain-of-function transgenic overexpression (fat body reduction); evolutionary conservation analysis EMBO reports High 12717455
2016 WDTC1 functions as a substrate receptor (DCAF) within a DDB1-CUL4-ROC1 (CRL4) E3 ubiquitin ligase complex; disrupting the WDTC1–DDB1 interaction abolishes adipogenic suppression, increases triglyceride accumulation and adipogenic gene expression in 3T3-L1 cells, and the CRL4WDTC1 complex promotes histone H2AK119 monoubiquitylation, implicating transcriptional repression as the mechanism of fat suppression. Co-immunoprecipitation to demonstrate WDTC1–DDB1 interaction; mutagenesis of the DDB1-binding interface; 3T3-L1 adipogenesis assay with triglyceride staining and adipogenic gene expression; chromatin immunoprecipitation for H2AK119 monoubiquitylation EMBO reports High 27113764

Source papers

Stage 0 corpus · 130 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2006 A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 1362 16751776
2010 Network organization of the human autophagy system. Nature 1286 20562859
2009 Defining the human deubiquitinating enzyme interaction landscape. Cell 1282 19615732
2008 Identification of host proteins required for HIV infection through a functional genomic screen. Science (New York, N.Y.) 1165 18187620
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2003 Complete sequencing and characterization of 21,243 full-length human cDNAs. Nature genetics 754 14702039
2011 Structure of mammalian AMPK and its regulation by ADP. Nature 730 21399626
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2006 Molecular architecture and assembly of the DDB1-CUL4A ubiquitin ligase machinery. Nature 585 16964240
1992 Structure of the recA protein-ADP complex. Nature 580 1731253
2020 Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science (New York, N.Y.) 564 33060197
2006 A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1. Molecular cell 538 16949367
2004 The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome research 438 15489334
2022 OpenCell: Endogenous tagging for the cartography of human cellular organization. Science (New York, N.Y.) 432 35271311
2010 Systematic analysis of human protein complexes identifies chromosome segregation proteins. Science (New York, N.Y.) 421 20360068
2005 Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome research 409 16344560
1992 Specific inhibitors of poly(ADP-ribose) synthetase and mono(ADP-ribosyl)transferase. The Journal of biological chemistry 402 1530940
2010 Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. Cell 318 21145461
2001 ADP receptors of platelets and their inhibition. Thrombosis and haemostasis 312 11487010
2005 Cyclic ADP-ribose and hydrogen peroxide synergize with ADP-ribose in the activation of TRPM2 channels. Molecular cell 270 15808509
2001 Importance of poly(ADP-ribose) glycohydrolase in the control of poly(ADP-ribose) metabolism. Experimental cell research 262 11461113
1998 Poly(ADP-ribose) polymerase null mouse cells synthesize ADP-ribose polymers. The Journal of biological chemistry 254 9804757
2021 ADP-ribosyltransferases, an update on function and nomenclature. The FEBS journal 247 34323016
2009 ADP-Glo: A Bioluminescent and homogeneous ADP monitoring assay for kinases. Assay and drug development technologies 227 20105026
2016 An organelle-specific protein landscape identifies novel diseases and molecular mechanisms. Nature communications 211 27173435
2015 A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. eLife 198 26673895
2009 A promiscuous alpha-helical motif anchors viral hijackers and substrate receptors to the CUL4-DDB1 ubiquitin ligase machinery. Nature structural & molecular biology 186 19966799
2015 Trapping Poly(ADP-Ribose) Polymerase. The Journal of pharmacology and experimental therapeutics 182 25758918
2015 The NLRP3 inflammasome is activated by nanoparticles through ATP, ADP and adenosine. Cell death & disease 177 25654762
2021 Shigella evades pyroptosis by arginine ADP-riboxanation of caspase-11. Nature 167 34671164
2015 The Promise of Proteomics for the Study of ADP-Ribosylation. Molecular cell 165 26091340
1999 Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. DNA research : an international journal for rapid publication of reports on genes and genomes 162 10470851
2020 (ADP-ribosyl)hydrolases: structure, function, and biology. Genes & development 160 32029451
1992 Histone shuttling by poly(ADP-ribosylation). The Journal of biological chemistry 157 1326536
2013 Poly(ADP-ribose): PARadigms and PARadoxes. Molecular aspects of medicine 155 23290998
2015 PARPs and ADP-Ribosylation: 50 Years … and Counting. Molecular cell 151 26091339
2006 The role of ADP receptors in platelet function. Frontiers in bioscience : a journal and virtual library 139 16368572
2019 Reversible ADP-ribosylation of RNA. Nucleic acids research 132 31216043
2005 P2Y1 and P2Y12 receptors for ADP desensitize by distinct kinase-dependent mechanisms. Blood 132 15665114
1999 Poly(ADP-ribosylation) and apoptosis. Molecular and cellular biochemistry 128 10544961
2023 ADP-ribosylation from molecular mechanisms to therapeutic implications. Cell 127 37832523
2015 Processing of protein ADP-ribosylation by Nudix hydrolases. The Biochemical journal 123 25789582
2013 Proteasome regulation by ADP-ribosylation. Cell 123 23622245
1994 Nitric oxide: a signal for ADP-ribosylation of proteins. Life sciences 120 8277819
2010 ADP-ribosylation of arginine. Amino acids 115 20652610
1988 Eukaryotic mono(ADP-ribosyl)transferase that ADP-ribosylates GTP-binding regulatory Gi protein. The Journal of biological chemistry 115 3128540
2007 Toward a confocal subcellular atlas of the human proteome. Molecular & cellular proteomics : MCP 114 18029348
2019 Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity. Genes & development 110 31753913
2005 Regulation of poly(ADP-ribose) metabolism by poly(ADP-ribose) glycohydrolase: where and when? Cellular and molecular life sciences : CMLS 104 15868399
2006 The structure of human ADP-ribosylhydrolase 3 (ARH3) provides insights into the reversibility of protein ADP-ribosylation. Proceedings of the National Academy of Sciences of the United States of America 98 17015823
1990 Aggregin: a platelet ADP receptor that mediates activation. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 98 2407587
2020 The Viral Macrodomain Counters Host Antiviral ADP-Ribosylation. Viruses 93 32244383
2021 ADP-ribosylation of DNA and RNA. DNA repair 91 34116477
2018 Interplay of Histone Marks with Serine ADP-Ribosylation. Cell reports 90 30257210
2019 ADP-ribosyltransferase PARP11 modulates the interferon antiviral response by mono-ADP-ribosylating the ubiquitin E3 ligase β-TrCP. Nature microbiology 88 30988430
2019 ADP-ribosylation signalling and human disease. Open biology 88 30991935
2005 Introduction to poly(ADP-ribose) metabolism. Cellular and molecular life sciences : CMLS 87 15868397
2012 Histone ADP-ribosylation facilitates gene transcription by directly remodeling nucleosomes. Molecular and cellular biology 86 22547677
2004 Regulation of ATP/ADP in pancreatic islets. Diabetes 86 14747291
2003 Poly(ADP-ribose) and carcinogenesis. Genes, chromosomes & cancer 85 14566854
1997 ADP-induced platelet activation. Critical reviews in biochemistry and molecular biology 85 9444477
2015 RNA Regulation by Poly(ADP-Ribose) Polymerases. Molecular cell 84 26091344
2011 Anti-platelet therapy: ADP receptor antagonists. British journal of clinical pharmacology 84 21518389
1998 Role of poly(ADP-ribose)synthetase in inflammation. European journal of pharmacology 83 9683009
2008 Mammalian ADP-ribosyltransferases and ADP-ribosylhydrolases. Frontiers in bioscience : a journal and virtual library 82 18508690
2002 Protein-protein interactions between large proteins: two-hybrid screening using a functionally classified library composed of long cDNAs. Genome research 82 12421765
2020 Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains. Cell reports 79 32814053
2014 The mitochondrial fission receptor MiD51 requires ADP as a cofactor. Structure (London, England : 1993) 79 24508339
2021 Ribosome ADP-ribosylation inhibits translation and maintains proteostasis in cancers. Cell 76 34314702
2011 Poly(ADP-ribosyl)ation in plants. Trends in plant science 75 21482174
2005 CD38 controls ADP-ribosyltransferase-2-catalyzed ADP-ribosylation of T cell surface proteins. Journal of immunology (Baltimore, Md. : 1950) 75 15749861
2019 The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis. Nature communications 74 31586073
2015 Synthesis of dimeric ADP-ribose and its structure with human poly(ADP-ribose) glycohydrolase. Journal of the American Chemical Society 74 25706250
2015 Intracellular Mono-ADP-Ribosylation in Signaling and Disease. Cells 74 26426055
2004 Modulation of poly(ADP-ribosylation) in apoptotic cells. Biochemical pharmacology 74 15313399
2016 ENPP1 processes protein ADP-ribosylation in vitro. The FEBS journal 72 27406238
2009 An interaction network of the mammalian COP9 signalosome identifies Dda1 as a core subunit of multiple Cul4-based E3 ligases. Journal of cell science 71 19295130
2020 Rotavirus induces intercellular calcium waves through ADP signaling. Science (New York, N.Y.) 70 33214249
2007 Structural insight into AMPK regulation: ADP comes into play. Structure (London, England : 1993) 70 17937917
2015 ADP-ribosyltransferases and poly ADP-ribosylation. Current protein & peptide science 69 25938242
2020 Engineering Af1521 improves ADP-ribose binding and identification of ADP-ribosylated proteins. Nature communications 68 33060572
2021 Molecular basis for DarT ADP-ribosylation of a DNA base. Nature 66 34408320
2021 Histone deacetylase inhibitors inhibit cervical cancer growth through Parkin acetylation-mediated mitophagy. Acta pharmaceutica Sinica. B 66 35256949
2009 Mechanism of cyclizing NAD to cyclic ADP-ribose by ADP-ribosyl cyclase and CD38. The Journal of biological chemistry 63 19640843
2003 Control of triglyceride storage by a WD40/TPR-domain protein. EMBO reports 63 12717455
2016 Wnt pathway activation by ADP-ribosylation. Nature communications 62 27138857
2019 ELTA: Enzymatic Labeling of Terminal ADP-Ribose. Molecular cell 61 30712989
1991 Phosphocreatine pathway for energy transport: ADP diffusion and cardiomyopathy. The American journal of physiology 59 1928451
2000 Cyclic ADP-ribose. Journal of molecular medicine (Berlin, Germany) 58 10759027
1994 Inhibitors and activators of ADP-ribosylation reactions. Molecular and cellular biochemistry 57 7898463
1994 Enzymatic and nonenzymatic ADP-ribosylation of cysteine. Molecular and cellular biochemistry 57 7898467
2019 Regulating Immunity via ADP-Ribosylation: Therapeutic Implications and Beyond. Trends in immunology 55 30658897
2017 The coronavirus nucleocapsid protein is ADP-ribosylated. Virology 55 29199039
2023 PARP14 is a PARP with both ADP-ribosyl transferase and hydrolase activities. Science advances 54 37703374
2016 ADPriboDB: The database of ADP-ribosylated proteins. Nucleic acids research 54 27507885
1994 Histone shuttling by poly ADP-ribosylation. Molecular and cellular biochemistry 54 7898476
2019 Mitotic functions of poly(ADP-ribose) polymerases. Biochemical pharmacology 52 30910692
1995 ADP-ribosylation reactions. Biochimie 52 8527483
2018 The poly (ADP ribose) polymerase inhibitor niraparib: Management of toxicities. Gynecologic oncology 51 29397193
2009 Proteomic investigation of phosphorylation sites in poly(ADP-ribose) polymerase-1 and poly(ADP-ribose) glycohydrolase. Journal of proteome research 51 19105632
2021 ADP-ribosylation systems in bacteria and viruses. Computational and structural biotechnology journal 50 34025930
2004 A novel ADP- and zinc-binding fold from function-directed in vitro evolution. Nature structural & molecular biology 50 15024384
1991 Mono-ADP-ribosylation in brain: purification and characterization of ADP-ribosyltransferases affecting actin from rat brain. Journal of neurochemistry 49 1910076
2018 MacroD1 Is a Promiscuous ADP-Ribosyl Hydrolase Localized to Mitochondria. Frontiers in microbiology 48 29410655
2005 Poly(ADP-ribosylation) and genomic stability. Biochemistry and cell biology = Biochimie et biologie cellulaire 48 15959554
2016 Scabin, a Novel DNA-acting ADP-ribosyltransferase from Streptomyces scabies. The Journal of biological chemistry 46 27002155
2022 Legionella pneumophila modulates host energy metabolism by ADP-ribosylation of ADP/ATP translocases. eLife 45 35084332
2015 SnapShot: ADP-Ribosylation Signaling. Molecular cell 45 26091348
2013 ATP and ADP actin states. Biopolymers 45 23348672
2006 The platelet ATP and ADP receptors. Current pharmaceutical design 45 16515502
2013 Poly(ADP-ribosyl)ation in carcinogenesis. Molecular aspects of medicine 43 23714734
2014 Proteomics approaches to identify mono-(ADP-ribosyl)ated and poly(ADP-ribosyl)ated proteins. Proteomics 42 25263235
2011 ADP-ribosylarginine hydrolase regulates cell proliferation and tumorigenesis. Cancer research 41 21697277
1997 ADP-ribose in glycation and glycoxidation reactions. Advances in experimental medicine and biology 41 9193679
2022 Poly(ADP-ribose) potentiates ZAP antiviral activity. PLoS pathogens 40 35130321
2014 C3larvin toxin, an ADP-ribosyltransferase from Paenibacillus larvae. The Journal of biological chemistry 40 25477523
2016 The antiobesity factor WDTC1 suppresses adipogenesis via the CRL4WDTC1 E3 ligase. EMBO reports 39 27113764
2022 Truncated PARP1 mediates ADP-ribosylation of RNA polymerase III for apoptosis. Cell discovery 38 35039483
2009 Magnitude and control of mitochondrial sensitivity to ADP. American journal of physiology. Endocrinology and metabolism 38 19622784
1986 Mechanisms of poly(ADP-ribose) polymerase catalysis; mono-ADP-ribosylation of poly(ADP-ribose) polymerase at nanomolar concentrations of NAD. FEBS letters 37 2935422
2004 Platelet ADP receptor antagonists: ticlopidine and clopidogrel. Best practice & research. Clinical haematology 36 15171957
2021 TARG1 protects against toxic DNA ADP-ribosylation. Nucleic acids research 35 34508355
2024 DELTEX E3 ligases ubiquitylate ADP-ribosyl modification on nucleic acids. Nucleic acids research 34 38000390
2023 A viral ADP-ribosyltransferase attaches RNA chains to host proteins. Nature 34 37587340
2021 A molecular toolbox for ADP-ribosyl binding proteins. Cell reports methods 34 34786571
2016 Players in ADP-ribosylation: Readers and Erasers. Current protein & peptide science 33 27090904
2016 Inhibiting poly(ADP-ribosylation) improves axon regeneration. eLife 33 27697151