Affinage

WDR89

WD repeat-containing protein 89 · UniProt Q96FK6

Length
387 aa
Mass
43.2 kDa
Annotated
2026-06-11
10 papers in source corpus 3 papers cited in narrative 3 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

WDR89 is the human orthologue of yeast Bcl1 and localizes in the proximity of the large ribosomal subunit protein RPL10A (the orthologue of yeast Rpl1), consistent with a conserved role as a dedicated chaperone facilitating handling and loading of the Rpl1/RPL10A ribosomal protein, a function validated for the yeast orthologue by direct pull-down and in vitro reconstitution of a trimeric complex [PMID:bio_10.1101_2025.09.18.677003]. In vivo, knockdown of Wdr89 in mice produces a thinner corpus callosum, placing it among WDR genes required for brain connectivity and neuronal morphology (PMID:29078390), though the molecular basis of this phenotype is not characterized in the available corpus. Beyond the proximity relationship to RPL10A and the murine phenotype, no direct biochemical mechanism for human WDR89 has been established in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2017 Low

    Established the first in vivo phenotype for WDR89 by asking whether it is among WDR genes needed for brain wiring, showing its loss disrupts a major axonal commissure.

    Evidence In vivo mouse inactivation screen across 26 WDR genes with corpus callosum morphology assessment

    PMID:29078390

    Open questions at the time
    • Phenotypic readout only; no molecular mechanism described for WDR89
    • Does not establish whether the corpus callosum defect is cell-autonomous or downstream of a ribosomal/biogenesis role
    • No cellular localization or interaction data for WDR89 in this study
  2. 2025 Medium

    Addressed the molecular function of WDR89 by mapping its protein neighborhood, positioning it near RPL10A and implying a conserved chaperone role for the large ribosomal subunit protein.

    Evidence TurboID-based proximity labelling (proxiOME) in human cells; yeast ortholog Bcl1 verified by direct pull-down and in vitro reconstitution of a trimeric complex (preprint)

    PMID:bio_10.1101_2025.09.18.677003

    Open questions at the time
    • Human WDR89 finding rests on a single proximity-labelling observation without direct functional follow-up
    • Direct binding and reconstitution were shown for the yeast orthologue, not human WDR89 itself
    • No demonstration that WDR89 loss impairs RPL10A loading or 60S subunit biogenesis in human cells
  3. 2026 Low

    Tested whether WDR89 physically engages an environmental PFAS compound, finding thermal stabilization upon GenX treatment consistent with direct binding.

    Evidence Thermal proteome profiling and CETSA with molecular docking validation

    PMID:41883243

    Open questions at the time
    • Thermal stabilization and docking are indirect evidence of binding awaiting orthogonal biophysical confirmation
    • No functional consequence of the WDR89-PFAS interaction established
    • Single study; relevance to the ribosomal/chaperone role unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether WDR89 functionally acts as a chaperone loading RPL10A onto pre-60S particles in human cells, and how this connects to the corpus callosum phenotype, remains unresolved.
  • No direct binding or reconstitution demonstrated for human WDR89
  • No link established between ribosomal function and the neuronal phenotype
  • No structural model of human WDR89 in the available corpus

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Partners

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2017 Wdr89 knockdown in mice produces a thinner corpus callosum phenotype, placing it among WDR genes required for brain connectivity and neuronal morphology. In vivo mouse inactivation screen; corpus callosum morphology assessment across 26 WDR genes Proceedings of the National Academy of Sciences of the United States of America Low 29078390
2025 WDR89 (human orthologue of yeast Bcl1) is found in the proximity of human RPL10A (the orthologue of yeast Rpl1) by TurboID-based proximity labelling, suggesting an evolutionarily conserved function as a dedicated chaperone for the large ribosomal subunit protein Rpl1/RPL10A. TurboID-based proximity labelling (proxiOME) in human cells; yeast ortholog Bcl1 verified by direct pull-down and in vitro reconstitution of trimeric complex bioRxiv (preprint)preprint Medium bio_10.1101_2025.09.18.677003
2026 WDR89 protein is stabilized (thermally shifted) upon treatment with the replacement PFAS compound HFPO-DA (GenX) in a thermal proteome profiling experiment, indicating direct or near-direct physical engagement between GenX and WDR89; molecular docking independently verified target engagement, suggesting a potential role in chromatin/complex assembly. Thermal proteome profiling (TPP) and cellular thermal shift assay (CETSA); molecular docking Environmental science & technology Low 41883243

Source papers

Stage 0 corpus · 10 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2017 WD40-repeat 47, a microtubule-associated protein, is essential for brain development and autophagy. Proceedings of the National Academy of Sciences of the United States of America 80 29078390
2021 A Novel Immune Classification for Predicting Immunotherapy Responsiveness in Patients With Adamantinomatous Craniopharyngioma. Frontiers in neurology 15 34966342
2022 The genomic landscape of Cronkhite-Canada syndrome: Possible clues for pathogenesis. Journal of digestive diseases 12 35678525
2024 Canadian COVID-19 host genetics cohort replicates known severity associations. PLoS genetics 4 38517939
2025 Discovery of mutated oncodriver genes associated with glioblastoma originated from stem cells of subventricular zone through whole exome sequence profile analysis, and drug repurposing. Heliyon 3 39906820
2020 [Study on expression and mechanism of serum differential proteins after rush immunotherapy of allergic rhinitis]. Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery 3 32842198
2024 CircSugp1 interacts with CPSF6 to modulate intestinal mucosa repair by regulating alternative polyadenylation-mediated shortening of the Wdr89 3'UTR. International immunopharmacology 1 39662264
2026 Applying Thermal Proteome Profiling to Per- and Polyfluoroalkyl Substances (PFAS): Proteome-Wide Identification of Molecular Targets and Early Events. Environmental science & technology 0 41883243
2026 Integrative Whole-Genome and Epigenome Profiling of cfDNA in Familial Prostate Cancer: Insights from a Pilot Study. Biomedicines 0 42072359
2024 Genome-Wide Association Study for Test-Day Milk Yield, Proteins, and Composition Traits of Crossbred Dairy Cattle in Ethiopia. International journal of genomics 0 39473539

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