Affinage

WDR83OS

PAT complex subunit Asterix · UniProt Q9Y284

Length
106 aa
Mass
12.1 kDa
Annotated
2026-06-11
22 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/4 claims corpus-supported (75%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

WDR83OS encodes Asterix (originally PAT-10), an endoplasmic reticulum translocon-associated chaperone that engages specific transmembrane segments of polytopic membrane proteins during their co-translational membrane integration (PMID:12475939). Site-specific cross-linking of nascent opsin chains established that Asterix remains selectively and persistently adjacent to particular TM segments — the first transmembrane domain and, with prolonged engagement, TM5 — while ignoring others such as TM2 and TM4, demonstrating that it discriminates among TM helices rather than acting indiscriminately (PMID:12475939, PMID:18248332). Asterix heterodimerizes with CCDC47 to form the PAT (protein associated with the ER translocon) complex, which functions to ensure proper folding of large transmembrane-domain-containing client proteins (PMID:39471804); consistent with this chaperone role, loss of WDR83OS reduces expression of the multipass channel TRPC6, with which it physically interacts alongside TMEM208 (PMID:31266804). Biallelic loss-of-function variants in WDR83OS cause a human neurodevelopmental disorder with hypercholanemia, and zebrafish lacking the gene show defects in nervous system development, craniofacial development, and lipid absorption (PMID:39471804).

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2002 High

    Established that an uncharacterized translocon-associated factor (PAT-10/WDR83OS) selectively engages defined transmembrane segments of a nascent polytopic protein, framing it as a segment-specific component of membrane protein biogenesis rather than a general translocon subunit.

    Evidence Site-specific cross-linking of nascent opsin at the ER translocon with Sec61 co-IP and glycosylation-independence controls

    PMID:12475939

    Open questions at the time
    • Did not identify the molecular identity of the chaperone activity or its binding partners
    • Limited to opsin TM1; generality across other substrates untested
    • Functional consequence of the association for folding not measured
  2. 2008 High

    Extended the selectivity model by showing prolonged engagement with opsin TM5 but rapid TM4 exit, demonstrating that segment discrimination follows the substrate's folding subdomains.

    Evidence Site-specific cross-linking of nascent opsin with TM7 hydrophobicity-substitution controls

    PMID:18248332

    Open questions at the time
    • Determinants of which TM segments are engaged remain undefined
    • No structural model of the engagement
    • Did not connect the activity to a named protein complex
  3. 2019 Medium

    Linked WDR83OS to a functional outcome by showing it is required for expression of a client multipass channel and physically associates with that client and TMEM208, embedding it in an ER translocation complex.

    Evidence Genome-wide CRISPR/Cas9 screen plus co-IP of WDR83OS with TRPC6 and TMEM208, with TRPC6 protein-level readout

    PMID:31266804

    Open questions at the time
    • Single lab, two orthogonal methods without reciprocal validation
    • Whether interaction is direct vs. complex-mediated not resolved
    • Stoichiometry and architecture of the complex not defined
  4. 2024 Medium

    Resolved the molecular identity and clinical relevance: WDR83OS encodes the 106-aa Asterix protein that heterodimerizes with CCDC47 as the PAT complex, and biallelic loss causes a human neurodevelopmental disorder with hypercholanemia recapitulated in zebrafish.

    Evidence Family-based exome sequencing with GeneMatcher case matching, zebrafish loss-of-function model, and biochemical characterization of the Asterix–CCDC47 heterodimer

    PMID:39471804

    Open questions at the time
    • Single publication for the disease association
    • Mechanistic link between PAT chaperone defect and hypercholanemia/lipid phenotype not established at molecular level
    • Full client repertoire of the PAT complex in vivo undefined

Open questions

Synthesis pass · forward-looking unresolved questions
  • How Asterix recognizes specific transmembrane segments and how its chaperone failure produces the tissue-specific phenotypes (neurodevelopment, bile/lipid homeostasis) remains unresolved.
  • No structural basis for TM-segment selectivity
  • Causal chain from chaperone loss to hypercholanemia unmapped
  • Comprehensive client substrate list not defined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0044183 protein folding chaperone 3
Localization
GO:0005783 endoplasmic reticulum 3
Pathway
R-HSA-392499 Metabolism of proteins 2
Complex memberships
PAT complex (Asterix–CCDC47)

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2002 PAT-10 (WDR83OS) is a novel ER translocon-associated component that remains adjacent to the first transmembrane domain (TM1) of the polytopic membrane protein opsin throughout its biogenesis and membrane integration, but does not associate with TM2, indicating it selectively chaperones specific TM segments during co-translational insertion. Site-specific cross-linking of nascent opsin chains at the ER translocon; co-immunoprecipitation with Sec61 subunits; N-glycosylation-independence assay; topology-independent TM1 association test Molecular biology of the cell High 12475939
2008 PAT-10 (WDR83OS) shows a pronounced and prolonged association with TM5 of opsin at the ER translocon, suggesting it facilitates assembly of distinct opsin subdomains; TM4 exits the translocon rapidly without PAT-10 association, demonstrating selective TM-segment engagement by PAT-10. Site-specific cross-linking of nascent opsin polypeptides at the ER translocon during biosynthesis; extension and substitution of TM7 with more hydrophobic segment as control The Biochemical journal High 18248332
2019 WDR83OS protein expression is necessary for normal TRPC6 protein expression; WDR83OS physically interacts with both TRPC6 and TMEM208, placing it in a protein complex required for ER translocation/expression of multipass transmembrane proteins. Genome-wide CRISPR/Cas9 loss-of-function screen; co-immunoprecipitation (WDR83OS with TRPC6 and TMEM208); TRPC6 protein level measurement upon WDR83OS deletion The Journal of biological chemistry Medium 31266804
2024 WDR83OS encodes the 106-amino-acid protein Asterix, which heterodimerizes with CCDC47 to form the PAT (protein associated with ER translocon) complex; this complex functions as a chaperone for large transmembrane-domain-containing proteins to ensure proper folding. Biallelic loss-of-function variants in WDR83OS cause a neurodevelopmental disorder with hypercholanemia in humans, and zebrafish lacking Wdr83os show defects in nervous system development, craniofacial development, and lipid absorption. Family-based rare variant analysis with exome sequencing; case matching (GeneMatcher); zebrafish loss-of-function model with phenotypic readouts (nervous system, craniofacial, lipid absorption); biochemical characterization of Asterix–CCDC47 heterodimer (PAT complex) American journal of human genetics Medium 39471804
2018 A homozygous truncating variant in WDR83OS (C19orf56) segregates with a syndrome of intractable itching, hypercholanemia, short stature, and intellectual disability in a family with three affected siblings; WDR83OS is described as known to interact with ATP13A2 and BSEP, implicating it in bile homeostasis. Exome sequencing and positional mapping in consanguineous family; segregation analysis Genetics in medicine Low 30250217

Source papers

Stage 0 corpus · 22 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2014 HSF-1-mediated cytoskeletal integrity determines thermotolerance and life span. Science (New York, N.Y.) 140 25324391
2018 Identification of novel loci for pediatric cholestatic liver disease defined by KIF12, PPM1F, USP53, LSR, and WDR83OS pathogenic variants. Genetics in medicine : official journal of the American College of Medical Genetics 88 30250217
2002 Different transmembrane domains associate with distinct endoplasmic reticulum components during membrane integration of a polytopic protein. Molecular biology of the cell 77 12475939
2017 Adaptor Protein-3-Dependent Vacuolar Trafficking Involves a Subpopulation of COPII and HOPS Tethering Proteins. Plant physiology 53 28559361
2018 A Tonoplast-Associated Calcium-Signaling Module Dampens ABA Signaling during Stomatal Movement. Plant physiology 44 29898977
2012 Gene silencing in root lesion nematodes (Pratylenchus spp.) significantly reduces reproduction in a plant host. Experimental parasitology 42 23201220
2017 Cardiac transcriptome profiling of diabetic Akita mice using microarray and next generation sequencing. PloS one 41 28837672
1999 Genomic organization, expression, and analysis of the troponin C gene pat-10 of Caenorhabditis elegans. The Journal of cell biology 40 10402470
2019 Transmembrane insertases and N-glycosylation critically determine synthesis, trafficking, and activity of the nonselective cation channel TRPC6. The Journal of biological chemistry 37 31266804
2008 Specific transmembrane segments are selectively delayed at the ER translocon during opsin biogenesis. The Biochemical journal 33 18248332
1997 Mutations and expressions of the tropomyosin gene and the troponin C gene of Caenorhabditis elegans. Cell structure and function 29 9113409
2018 The ADAPTOR PROTEIN-3 Complex Mediates Pollen Tube Growth by Coordinating Vacuolar Targeting and Organization. Plant physiology 27 29523712
2012 RNA interference in Pratylenchus coffeae: knock down of Pc-pat-10 and Pc-unc-87 impedes migration. Molecular and biochemical parasitology 21 23043990
2019 S-acylation of CBL10/SCaBP8 by PAT10 is crucial for its tonoplast association and function in salt tolerance. Journal of integrative plant biology 19 31441225
2012 The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome. BMC genomics 11 23095951
2023 Transgenic East African Highland Banana Plants Are Protected against Radopholus similis through Host-Delivered RNAi. International journal of molecular sciences 5 37569502
2022 Identification of the Extracellular Nuclease Influencing Soaking RNA Interference Efficiency in Bursaphelenchus xylophilus. International journal of molecular sciences 5 36293134
2024 Integrative analysis of genome-wide association studies of polyphenols in apple fruits identifies the MdDof2.4-MdPAT10 module that promotes procyanidin accumulation. Horticulture research 2 40061802
2025 Single-Cell Transcriptomic Atlas of Peripheral Blood Reveals B-Cell-Driven Signature Predictive of Acute Pancreatitis Severity. MedComm 1 40959459
2024 Homozygous variants in WDR83OS lead to a neurodevelopmental disorder with hypercholanemia. American journal of human genetics 1 39471804
2025 Nematicidal Efficacy of a dsRNA-Chitosan Formulation Against Acrobeloides nanus Estimated by a Soil Drenching Application. Biology 0 41007306
2006 A novel non-coding DNA family in Caenorhabditis elegans. Gene 0 17134856

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