| 2023 |
Crystal structure of METTL1-WDR4 and cryo-EM structures of METTL1-WDR4-tRNA reveal that WDR4 serves as a scaffold for METTL1 and the tRNA T-arm; the composite protein surface recognizes the tRNA elbow through shape complementarity. The METTL1 N-terminus couples cofactor (SAM) binding with conformational changes in the tRNA, the catalytic loop, and the WDR4 C-terminus, acting as the switch to activate m7G methylation. Post-translational modifications of the METTL1 N-terminus can thereby regulate methylation. |
X-ray crystallography (METTL1-WDR4), cryo-EM (METTL1-WDR4-tRNA with SAM/SAH), active-site structural analysis |
Nature |
High |
36599982
|
| 2023 |
Structural, biochemical, and cellular studies show WDR4 serves as a scaffold for METTL1 and the tRNA T-arm. Upon tRNA binding, the αC region of METTL1 forms a helix that secures the tRNA variable loop. The predicted disordered N-terminal region of METTL1 is part of the catalytic pocket and essential for methyltransferase activity. S27 phosphorylation of METTL1 inhibits methyltransferase activity by disrupting the catalytic centre. |
Cryo-EM structure, X-ray crystallography, biochemical methyltransferase assays, phosphomimetic mutagenesis, cellular complementation |
Nature |
High |
36599985
|
| 2018 |
METTL1 and WDR4 form a complex that methylates a subset of 22 tRNAs at the N7-methylguanosine (m7G) position within a 'RAGGU' motif in the variable loop. Mettl1 or Wdr4 knockout in mouse ESCs causes increased ribosome occupancy at corresponding codons, indicating ribosome pausing and impaired mRNA translation. Knockout mESCs display defective self-renewal and neural differentiation. |
m7G-MeRIP-seq, TRAC-seq, ribosome profiling, genetic knockout in mESCs, differentiation assays |
Molecular cell |
High |
29983320
|
| 2015 |
WDR4 is the human ortholog of yeast Trm82, an essential non-catalytic subunit of the Trm8/Trm82 holoenzyme that catalyzes m7G46 methylation of tRNA. A disease-causing missense mutation in WDR4 (and the corresponding yeast mutation) significantly reduces m7G46 methylation of specific tRNA species, causing a growth deficiency phenotype in yeast. |
Yeast genetics, tRNA methylation assay, autozygome/exome sequencing, functional complementation in yeast |
Genome biology |
High |
26416026
|
| 2007 |
The yeast Trm8-Trm82 (ortholog of METTL1-WDR4) complex requires both the D-stem and T-stem structures of tRNA for efficient methyl-transfer to G46. Tertiary base pairs in the D-stem support but are not essential for induced fit of the G46 base into the catalytic pocket. |
In vitro methyl-transfer activity assay using truncated and mutant tRNA transcripts |
FEBS letters |
High |
17382321
|
| 2007 |
Active yeast Trm8-Trm82 heterodimer (ortholog of METTL1-WDR4) is only produced when both subunit mRNAs are co-translated; mixing individually translated Trm8 and Trm82 proteins does not yield an active complex. This indicates that subunit association is translationally controlled. The complex catalyzes SAM-dependent methyl transfer to N7 of G46 in tRNA. |
Wheat germ cell-free translation system, in vitro reconstitution, kinetic enzymatic assay, 2D-TLC, aniline cleavage |
Journal of biotechnology |
High |
18164779
|
| 2016 |
Drosophila Wuho (WDR4 ortholog) interacts with Flap Endonuclease 1 (FEN1). WH co-localizes with FEN1 and PCNA at sites of nascent DNA synthesis. WH modulates FEN1's endonucleolytic activities in a substrate-dependent manner: it stimulates FEN1's flap endonuclease activity but inhibits its gap endonuclease activity, thereby protecting replication fork integrity. Knockdown in Drosophila, mouse, and human cells causes DNA damage with strand breaks and apoptosis via ATM/Chk2/p53 signaling. |
Co-immunoprecipitation, fluorescence microscopy (colocalization), in vitro FEN1 endonuclease assay with WH, siRNA knockdown in multiple species, mouse knockout (embryonic lethal) |
PLoS biology |
High |
26751069
|
| 2020 |
Drosophila Wuho (WDR4 ortholog) physically interacts with Mei-p26 (TRIM-NHL protein, ortholog of human TRIM32) and cooperates with it to maintain germline stem cell homeostasis. In GSCs, Wh and Mei-p26 promote BMP stemness signaling. In GSC progeny, they silence nanos translation, downregulate pro-differentiation microRNAs, and suppress ribosomal biogenesis via dMyc. Human WDR4 interacts with TRIM32 in human cells. |
Genetic epistasis (double mutants), Co-immunoprecipitation in Drosophila and human cells, translational reporter assays, stem cell functional assays |
Development (Cambridge, England) |
Medium |
31941704
|
| 2023 |
WDR4 acts as a substrate adaptor of the CUL4 E3 ubiquitin ligase complex. WDR4-mediated ubiquitination of PTPN23 (an ESCRT component) leads to its proteasomal degradation, thereby suppressing lysosomal trafficking and degradation of EGFR and c-MET, sustaining their signaling in NSCLC. A competing peptide that blocks PTPN23 binding to WDR4 promotes EGFR/c-MET degradation. |
Unbiased ubiquitylome mass spectrometry, Co-IP, ubiquitination assay, lysosomal trafficking assay, competing peptide functional rescue, in vitro and in vivo tumor models |
Cell death & disease |
High |
37821451
|
| 2023 |
WDR4 deficiency in granule neuron progenitors (GNPs) reduces cerebellar foliation and layer sizes, causing locomotion defects. Mechanistically, Wdr4 supports GNP proliferation by ubiquitination and proteasomal degradation of Arhgap17, thereby activating Rac1 to facilitate cell cycle progression. Disease-associated WDR4 variants cannot sustain this GNP cell cycle maintenance. |
Conditional knockout mouse model, cell cycle analysis, ubiquitination assay, Rac1 activity assay, rescue with disease variants |
Cell death & disease |
Medium |
36681682
|
| 2024 |
WDR4 loss-of-function in human fibroblasts and zebrafish embryos impairs ciliogenesis. Mechanistically, WDR4 loss increases protein synthesis and upregulates proteasomal activity while reducing ubiquitin precursor pools. Restoring normal ubiquitin levels (by proteasome inhibition or ubiquitin supplementation) rescues ciliogenesis. Proteasome inhibition also ameliorates microcephaly phenotypes. |
Human fibroblast knockdown, zebrafish morpholino/mutant, patient-derived cells, proteasome activity assay, ubiquitin quantification, pharmacological rescue |
Cell death & disease |
Medium |
39251572
|
| 2023 |
WDR4 promotes nuclear localization of DDX20 and acts as an adaptor to bridge DDX20 and the transcription factor EGR1, thereby inhibiting EGR1-promoted transcription of ARRB2, contributing to bladder cancer lymph node metastasis. |
Co-IP, nuclear fractionation, transcriptional reporter assay, gain/loss-of-function in bladder cancer cells and xenograft models |
Oncogenesis |
Medium |
37783676
|
| 2021 |
METTL1/WDR4-mediated m7G tRNA modification enhances translation of mRNAs enriched for m7G tRNA-decoded codons. In lung cancer, knockdown of METTL1 reduces translation of mRNAs with higher frequencies of m7G-decoded codons, indicating that tRNA codon usage is a key mechanism by which the complex controls mRNA translation. |
m7G-MeRIP-seq, polysome profiling/translation assay, METTL1/WDR4 knockdown and overexpression, in vitro and in vivo tumor models, mutagenesis of METTL1 catalytic residues |
Molecular therapy |
High |
34371184
|
| 2021 |
WDR4 promotes CCNB1 mRNA stability and translation in HCC by promoting binding of EIF2A to CCNB1 mRNA. WDR4 expression is transcriptionally activated by c-MYC. CCNB1 in turn promotes PI3K/AKT phosphorylation and reduces P53 protein by promoting its ubiquitination, defining a MYC/WDR4/CCNB1/PI3K/AKT/P53 signaling axis. |
RNA immunoprecipitation (RIP), Co-IP, mRNA stability assay, polysome profiling, ChIP, gain/loss-of-function, xenograft models |
Cell death & disease |
Medium |
34244479
|
| 2025 |
Cytoplasmic WDR4 acts independently of m7G tRNA modification by directly interacting with eIF4E2, enhancing eIF4E-mediated selective translation of ABCA1, thereby promoting membrane cholesterol efflux and maintaining pro-tumoral macrophage polarization in HCC. |
Co-IP (WDR4-eIF4E2 interaction), polysome fractionation, cholesterol efflux assay, macrophage polarization assay, siRNA-CpG delivery in vivo, rescue with ABCA1 |
Nature cell biology |
Medium |
41315768
|
| 2024 |
WDR4 modulates m7G modification at internal sites of tumor-promoting mRNAs by forming a WDR4-METTL1 protein complex (confirmed by Co-IP). WDR4 knockdown also downregulates METTL1 mRNA and protein expression, indirectly reducing complex formation. |
Co-IP, m7G-MeRIP-seq, dot blot, RNA-seq, knockdown/rescue experiments in HCC cells |
Cellular signalling |
Medium |
38493882
|
| 2018 |
WDR4 deficiency in mouse embryonic fibroblasts (MEFs) induces γH2AX elevation, heterochromatin relaxation, p53 activation, caspase-mediated apoptosis, and p21-mediated G2/M cell cycle arrest, downstream of Wuho-FEN1 interaction. |
Tamoxifen-inducible Cre-mediated knockout in MEFs, western blotting, immunofluorescence for γH2AX, cell cycle analysis |
Cellular signalling |
Medium |
29574139
|
| 2025 |
In Drosophila midgut, Wdr4 cooperates with Mettl1 to catalyze m7G modification of let-7 miRNA. Wdr4 or Mettl1 depletion reduces let-7 levels, aberrantly activates TOR-JNK-dMyc signaling, drives elevated ribosome biogenesis, ISC overproliferation and misdifferentiation. Human WDR4 and METTL1 (but not catalytic-dead METTL1) rescue these defects, establishing a conserved Wdr4/Mettl1-let-7-TOR-JNK axis. |
Drosophila genetic knockdown/overexpression, m7G miRNA modification assay, epistasis with TOR/JNK inhibitors, human WDR4/METTL1 rescue including catalytic-dead mutant |
EMBO reports |
Medium |
41663759
|
| 2025 |
WDR4 promotes adipocyte browning by enhancing BMP8B mRNA translation through tRNA m7G modification. WDR4 overexpression in adipocytes reshapes the tRNA m7G methylome, increases translational activity of BMP8B and related genes, and induces mitophagy and UCP1 expression; BMP8B knockdown partially counteracts WDR4-mediated mitophagy. |
TRAC-seq, tRNA m7G methylome profiling, gain-of-function in 3T3-L1 and primary adipocytes, mitophagy assays, BMP8B knockdown rescue |
Adipocyte |
Medium |
41292047
|
| 2025 |
METTL1/WDR4-mediated internal m7G methylation of SCLT1 mRNA stabilizes the transcript and promotes gefitinib resistance in NSCLC via NF-κB signaling activation. Wild-type METTL1 but not a catalytically inactive METTL1 mutant rescues SCLT1 mRNA stability upon knockdown. |
m7G MeRIP-seq, RNA-seq, mRNA stability assay, catalytic-dead METTL1 rescue, NF-κB reporter, in vitro and in vivo models |
Genomics, proteomics & bioinformatics |
Medium |
40857569
|
| 2025 |
In colorectal cancer, WDR4 physically interacts with GSK3β (identified by Co-IP-LC/MS) and promotes GSK3β phosphorylation, thereby activating the β-catenin pathway to promote CRC proliferation and metastasis. |
Co-IP-LC/MS, western blotting for β-catenin pathway markers, gain/loss-of-function, xenograft models |
Biochemistry and cell biology |
Low |
40009829
|
| 2006 |
Drosophila Wuho (WDR4 ortholog), a WD40-repeat protein with a bipartite nuclear localization signal, is required for spermatogenesis (arrests at elongating spermatid stage) and oogenesis (cystocyte division arrested at 4th mitotic cycle). Yeast homolog Trm82 is established as the non-catalytic subunit of a tRNA methylase. |
P-element mutagenesis, transgenic rescue, immunostaining, cytological analysis of germline |
Developmental biology |
Medium |
16762337
|