| 2008 |
USP30 is a deubiquitinating enzyme embedded in the mitochondrial outer membrane; depletion by RNAi induces elongated, interconnected mitochondria dependent on mitofusin activity, and this phenotype is rescued by enzymatically active USP30 but not catalytic mutants, establishing USP30 as a regulator of mitochondrial morphology through its DUB activity. |
RNAi knockdown, ectopic expression of wild-type vs. catalytic-dead USP30, fluorescence microscopy of mitochondrial morphology, subcellular fractionation |
Molecular biology of the cell |
High |
18287522
|
| 2014 |
USP30 localizes to mitochondria and opposes Parkin-mediated mitophagy: overexpression of USP30 removes ubiquitin from Parkin substrates on damaged mitochondria and blocks mitophagy, while USP30 knockdown enhances mitochondrial degradation. Global ubiquitination site profiling identified multiple mitochondrial substrates oppositely regulated by Parkin and USP30. In Drosophila, USP30 knockdown rescues defective mitophagy caused by pathogenic Parkin mutations and protects dopaminergic neurons against paraquat toxicity. |
Overexpression/knockdown, global ubiquitination site profiling (mass spectrometry), mitophagy assays, Drosophila genetic rescue experiments |
Nature |
High |
24896179
|
| 2014 |
The diterpenoid derivative 15-oxospiramilactone (S3) inhibits USP30, leading to non-degradative ubiquitination of Mfn1/2 that enhances mitofusin activity and promotes mitochondrial fusion, uncovering that USP30-dependent deubiquitination of mitofusins suppresses their fusion activity. |
Chemical inhibition with S3, mitochondrial fusion assays, ubiquitination assays for Mfn1/2, cell lines deficient in Mfn1 or Mfn2 |
Cell research |
Medium |
24513856
|
| 2015 |
USP30 deubiquitylates TOM20 opposing Parkin-dependent ubiquitylation; USP30 depletion enhances depolarization-induced cell death in Parkin-overexpressing cells and sensitizes cancer cells to BH3-mimetics by regulating BAX/BAK-dependent apoptosis, establishing a role for USP30 in controlling the mitochondrial apoptotic threshold. |
USP30 depletion (siRNA/shRNA), cell death assays, ubiquitylation assays for TOM20, BH3-mimetic sensitivity assays |
EMBO reports |
Medium |
25739811
|
| 2017 |
Crystal structures of human USP30 bound to monoubiquitin and Lys6-linked diubiquitin reveal unique ubiquitin-binding interfaces that confer Lys6-linkage preference for cleavage. Distally phosphorylated (pSer65) ubiquitin chains impair USP30 activity. Lys6-linkage-specific affimers identified TOM20 as a mitochondrial substrate for Lys6-polyubiquitination regulated by USP30. |
X-ray crystallography, in vitro DUB activity assays, phospho-ubiquitin chain inhibition assays, Lys6-specific affimer pulldowns, quantitative proteomics |
Nature structural & molecular biology |
High |
28945249
|
| 2018 |
USP30 regulates basal pexophagy independently of PINK1 and Parkin: a fraction of endogenous USP30 localizes to peroxisomes where it suppresses basal pexophagy. Additionally, USP30 acts upstream of PINK1 in basal mitophagy by modulating PINK1-substrate availability, establishing dual organelle roles. |
Mitophagy reporter systems, immunofluorescence/fractionation to show peroxisomal localization, genetic KO/knockdown of USP30, PINK1 pathway analysis |
EMBO reports |
High |
29895712
|
| 2018 |
GNPAT recruits USP30, which deubiquitylates and stabilizes DRP1, thereby promoting mitochondrial fission and hepatocarcinogenesis; USP30 interaction with DRP1 was established by Co-IP. |
Co-immunoprecipitation, ubiquitination assays, DRP1 protein stability assays, loss-of-function experiments in HCC cells |
Cancer research |
Medium |
30143522
|
| 2019 |
USP30 localizes to peroxisomes and prevents pexophagy by counteracting the peroxisomal E3 ubiquitin ligase PEX2; USP30 overexpression blocks amino-acid-starvation-induced pexophagy, and its depletion triggers basal pexophagy, establishing a PEX2–USP30 ubiquitin axis controlling peroxisome abundance. |
USP30 overexpression/depletion, pexophagy assays, peroxisomal localization by microscopy, genetic epistasis with PEX2 |
The Journal of cell biology |
High |
30700497
|
| 2020 |
In induced neurons (iNeurons), USP30 knockout reveals that elevated ubiquitylation targets concentrate on mitochondrial translocon (TOM complex) components; USP30 loss accelerates pS65-Ub accumulation and mitophagic flux modestly without altering ubiquitylation kinetics of the vast majority of Parkin targets. Basally, ubiquitylated translocon import substrates accumulate in USP30-/- iNeurons, indicating a quality control function for USP30 at the TOM complex. |
Quantitative ubiquitylomics/proteomics in USP30-/- iNeurons, CRISPR KO, mitophagy flux assays |
Molecular cell |
High |
32142685
|
| 2020 |
USP30 sets a trigger threshold for PINK1-Parkin amplification of mitochondrial ubiquitylation: TOM20 ubiquitylation is a robust biomarker for USP30 loss/inhibition, and USP30 deubiquitylation of TOM complex components dampens the local ubiquitin signal at the site of PINK1 accumulation following depolarization, slowing Parkin-dependent amplification. |
Selective USP30 inhibitor (FT3967385), proteomics in SH-SY5Y cells, comparison of genetic KO vs chemical inhibition, pS65-Ub kinetics, mitophagy assays |
Life science alliance |
High |
32636217
|
| 2020 |
Tryptophan residue W475 near the USP30 active site contributes to diubiquitin linkage selectivity; replacement with noncanonical Trp analogues modulates activity and K6-specificity, with 3-benzothienyl-l-alanine inducing unique K6-specificity. |
Genetic code expansion/noncanonical amino acid incorporation, in vitro DUB activity assays with diubiquitin substrates, X-ray crystallography of PylRS-ncAA complexes |
Biochemistry |
Medium |
32484330
|
| 2021 |
USP30 deubiquitylates NLRP3, activating the NLRP3 inflammasome; this interaction was verified by Co-IP and ubiquitination assays, and USP30 knockdown or inhibition reduces NLRP3 inflammasome activity in skin fibroblasts. |
Co-immunoprecipitation, ubiquitination assays, shRNA knockdown, USP30 inhibitor MF-094, NLRP3 inflammasome activity readouts |
Experimental cell research |
Medium |
34883112
|
| 2022 |
A peptide (Q14) derived from the transmembrane domain of USP30 inhibits USP30 via an autoinhibitory allosteric mechanism; binding sites between Q14 and USP30 were identified by fluorescence polarization and microscale thermophoresis, proposing that the TM domain can allosterically regulate USP30 catalytic activity. |
Fluorescence polarization, microscale thermophoresis, peptide binding studies, mitophagy assays, LC3-interaction via LIR motif characterization |
Autophagy |
Medium |
34989313
|
| 2022 |
A benzosulfonamide inhibitor (USP30inh) binds to the cleft between the USP30 thumb and palm subdomains, preventing ubiquitin C-terminus guidance to the active site; hydrogen-deuterium exchange MS and computational docking reveal compound-induced structural rearrangements at this cleft rather than direct active-site occlusion. |
Activity-based protein profiling MS (selectivity against 49 DUBs), enzyme kinetics, hydrogen-deuterium exchange MS, computational docking |
Molecular & cellular proteomics |
High |
37385347
|
| 2023 |
USP30 interacts with and deubiquitylates Snail via K48-linked polyubiquitin chains, stabilizing Snail protein and promoting EMT in breast cancer cells; verified by Co-IP and ubiquitination assays. |
Co-immunoprecipitation, ubiquitination assays, knockdown/overexpression, proliferation/invasion assays |
Cancer gene therapy |
Medium |
38146008
|
| 2024 |
CDK5 phosphorylates USP30 at serine 216 to stabilize USP30 protein; CDK5-USP30 signaling suppresses mitophagy and activates MAVS-mediated inflammation in MPTP/MPP+-induced Parkinson's disease models. |
Phosphorylation site identification (Ser216), CDK5 inhibition experiments, USP30 protein stability assays, MAVS pathway analysis, mitophagy assays in BV2 cells and in vivo MPTP mouse model |
Ecotoxicology and environmental safety |
Medium |
38772138
|
| 2024 |
NPRC recruits USP30 to deubiquitinate C/EBPβ at K149 (K48-linked polyubiquitination), stabilizing C/EBPβ and driving lipid metabolism reprogramming in MAFLD; the DNA-binding domain of C/EBPβ interacts with USP30, and the ANPR region of NPRC binds USP30. |
Proteomics, ubiquitination analysis, Co-immunoprecipitation, domain mapping experiments |
Metabolism: clinical and experimental |
Medium |
39433172
|
| 2024 |
HMGA2 stabilizes S100A6 by recruiting USP30, inhibiting S100A6 ubiquitination/degradation; demonstrated by Co-IP and mass spectrometry in ovarian cancer cells. |
Co-immunoprecipitation, mass spectrometry, ubiquitination assays, rescue experiments |
Biochimica et biophysica acta. Molecular basis of disease |
Low |
39694080
|
| 2024 |
USP30 binds to and deubiquitylates FTO, protecting it from proteasomal degradation; USP30 senses serine/glycine levels to regulate FTO stability, which in turn demethylates PHGDH/PSAT1 mRNAs promoting serine biosynthesis in colorectal cancer. |
Co-immunoprecipitation, ubiquitination assays, proteomic/metabolomic analyses, m6A demethylation assays |
Cell death and differentiation |
Medium |
41652187
|
| 2024 |
USP30 deubiquitylates TOMM40, reducing its ubiquitination and stabilizing it; USP30 knockdown reduces TOMM40 protein levels and suppresses breast cancer cell proliferation and angiogenesis, establishing TOMM40 as a USP30 substrate in cancer. |
Co-immunoprecipitation, ubiquitination assays, knockdown experiments, cell proliferation/angiogenesis assays |
Journal of biochemical and molecular toxicology |
Medium |
40227042
|
| 2025 |
Crystal structure of human USP30 in complex with a specific inhibitor (enabled by chimeric protein engineering) reveals that the inhibitor occupies a cryptic pocket induced by a compound-driven conformation of the USP30 switching loop; the Leu73 ubiquitin-binding site constitutes a common ligandability hotspot for USP deubiquitinases. |
X-ray crystallography of chimeric USP30–inhibitor complex, chimeric protein engineering strategy, structure-activity relationship analysis |
Nature structural & molecular biology |
High |
40325251
|
| 2025 |
A cyanopyrrolidine-containing covalent inhibitor (USP30-I-1) binds tightly near the catalytic cysteine (Cys77) of USP30 in a pocket along the thumb and palm domains, preventing ubiquitin substrate binding; HDX-MS reveals structural rearrangements that differ slightly from the benzosulfonamide binding mode, providing molecular basis for differential selectivity. |
Enzyme kinetics, hydrogen-deuterium exchange MS, activity-based protein profiling, selectivity profiling against DUB panel |
Journal of proteome research |
High |
39804742
|
| 2025 |
USP30 deubiquitylates and stabilizes HK1 and HK2 by preferentially removing atypical ubiquitin chains; Lys144 of HK2 is the critical regulatory site, and USP30-mediated deubiquitination enhances HK2 stability, mitochondrial localization, VDAC1 binding, and hexokinase activity to promote glycolysis and tumor progression. |
Co-immunoprecipitation, quantitative proteomics and ubiquitinomics, site-directed mutagenesis (K144R), HK2 activity assays, mitochondrial fractionation |
Cell death & disease |
High |
41688443
|
| 2025 |
USP30 depletion destabilizes methionine adenosyltransferase 2A (MAT2A) through a deubiquitination-dependent mechanism, lowering SAM levels, reducing global DNA methylation, and upregulating miR-30a-5p to suppress MDM2 and NFAT5, thereby maintaining endothelial cell barrier function via a mitophagy-independent pathway. |
EC-specific USP30 knockout mice, LPS/ischemia-reperfusion lung injury models, ubiquitination assays for MAT2A, SAM level measurement, DNA methylation assays, miRNA expression |
Advanced science |
Medium |
41104980
|
| 2025 |
USP30 loss or pharmacological inhibition improves mitochondrial morphology, increases membrane potential and ATP levels with decreased oxygen consumption (suggesting more efficient mitochondrial network), and these morphological changes are independent of PINK1 or Parkin. |
CRISPR/Cas9 KO, CRISPRi knockdown, pharmacological inhibition, mitophagy reporters, electrophysiology, mitochondrial membrane potential and ATP assays in cell lines and iPSC-derived neurons |
bioRxivpreprint |
Medium |
|
| 2024 |
Proximity-labelling ubiquitomics (APEX2 + K-ε-GG enrichment) identifies TOMM20, FKBP8, and LETM1 as USP30-proximal substrates; LETM1 is deubiquitinated in a USP30-dependent manner as a previously undescribed candidate substrate. |
APEX2 proximity labelling, ubiquitin remnant (K-ε-GG) enrichment, quantitative mass spectrometry, USP30 inhibition |
bioRxivpreprint |
Low |
|