Affinage

TXNDC11

Thioredoxin domain-containing protein 11 · UniProt Q6PKC3

Length
985 aa
Mass
110.5 kDa
Annotated
2026-06-10
21 papers in source corpus 8 papers cited in narrative 8 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TXNDC11 is an ER-resident, thioredoxin domain-containing protein that initiates the N-glycan mannose-trimming step required to commit misfolded glycoproteins to ER-associated degradation (ERAD) (PMID:27283361, PMID:34698634). It functions as an obligate partner of the mannosidase EDEM2, forming a stable intermolecular disulfide bond between C692 in its Trx5 domain (its sole CXXC-containing domain) and C558 of EDEM2; this covalent linkage is essential for the complex's α1,2-mannosidase activity, which converts Man9GlcNAc2 to the Man8GlcNAc2 isomer B (PMID:32065582). The purified EDEM2-TXNDC11 complex catalyzes this first trimming step, while subsequent trimming is carried out by EDEM3 and EDEM1, placing the TXNDC11-EDEM2 complex at the entry point of the gpERAD oligosaccharide-processing route (PMID:34698634); TXNDC11 also associates with and stimulates the glycoprotein mannosidase activity of EDEM1 and EDEM2, particularly toward unfolded substrates (PMID:30374462). TXNDC11 is itself an ER stress-inducible gene, transcriptionally upregulated through a functional UPRE in its promoter via the IRE1-sXBP1 pathway, and it promotes turnover of the ER-resident transcription factors ATF6α, CREB3, and CREB3L2, with substrate selectivity that excludes NFE2L1 and LOX (PMID:36152228, PMID:41656087, PMID:41518417). An earlier identification described TXNDC11 (EFP1) as a thioredoxin-related interactor of the thyroid oxidases Duox1/Duox2 and TPO in thyrocytes (PMID:15561711).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 2004 Medium

    Before any ERAD role was known, the question was what protein TXNDC11 (EFP1) physically engages; identifying it as a thioredoxin-related binding partner of thyroid oxidases established it as a redox-active interactor in the ER/thyroid context.

    Evidence Yeast two-hybrid with Duox1 EF-hand bait, reciprocal Co-IP in COS cells and primary thyrocytes, immunofluorescence co-localization

    PMID:15561711

    Open questions at the time
    • No catalytic activity or redox mechanism demonstrated
    • Functional consequence of Duox/TPO binding not established
    • ER glycoprotein role not yet recognized
  2. 2016 Medium

    Unbiased forward genetics asked which genes are required for glycoprotein ERAD and identified TXNDC11 as an EDEM2/3-associated factor needed to degrade MHC class I, linking it to the canonical gpERAD pathway.

    Evidence Parallel genome-wide CRISPR/Cas9 and haploid gene-trap screens for ERAD of MHC class I

    PMID:27283361

    Open questions at the time
    • Disulfide reductase activity asserted but not reconstituted in vitro
    • Direct biochemical partnership with EDEM2 not yet mapped
    • Substrate scope undefined
  3. 2018 Medium

    To define what TXNDC11 contributes biochemically, this work showed it associates with EDEM1/EDEM2 and enhances their mannosidase activity on glycoprotein (not free-glycan) substrates, identifying it as a functional oxidoreductase cofactor of the EDEMs.

    Evidence In vitro mannosidase assays with native vs. denatured glycoprotein substrates, Co-IP

    PMID:30374462

    Open questions at the time
    • The molecular nature of the EDEM-TXNDC11 linkage not resolved
    • Specific cysteines and bond not identified
    • Step in the trimming cascade not assigned
  4. 2020 High

    The mechanistic basis of the partnership was resolved by showing a stable intermolecular disulfide bond (EDEM2 C558–TXNDC11 Trx5 C692) is required for mannosidase activity, converting an associative cofactor model into a defined covalent catalytic complex.

    Evidence HCT116 knockouts, cysteine site-directed mutagenesis, purification of the EDEM2-TXNDC11 complex, in vitro α1,2-mannosidase assay with pyridylamine-labeled substrates

    PMID:32065582

    Open questions at the time
    • Mechanism by which the disulfide bond activates EDEM2 catalysis not structurally defined
    • Whether TXNDC11 redox chemistry actively forms/maintains the bond not shown
  5. 2021 High

    To place the complex in the pathway, epistasis showed EDEM2-TXNDC11 performs the first trimming step (M9→M8B) while EDEM3/EDEM1 act subsequently, identifying TXNDC11 as the initiator of the gpERAD oligosaccharide route.

    Evidence Knockout epistasis and in vitro mannosidase assays with purified proteins and pyridylamine-labeled oligosaccharides

    PMID:34698634

    Open questions at the time
    • Determinants of substrate selection at the first step unknown
    • How trimming output is handed to downstream lectins/ERAD machinery not addressed
  6. 2022 Medium

    This work asked how TXNDC11 is regulated and what it degrades, showing it is an IRE1-sXBP1/UPRE-induced gene that promotes turnover of ER-resident transcription factors ATF6α, CREB3, and CREB3L2, embedding it in UPR feedback.

    Evidence RT-PCR, Western blot, UPRE luciferase reporter, cycloheximide chase in TXNDC11-deficient vs. WT HEK293 cells

    PMID:36152228

    Open questions at the time
    • Whether these substrates are degraded via the EDEM2 mannose-trimming arm specifically not separated
    • Direct physical engagement with the transcription factors not shown
  7. 2026 Low

    To test the breadth of TXNDC11-dependent ERAD, two studies showed NFE2L1 and LOX are NOT stabilized by TXNDC11 (or EDEM2) loss, unlike SEL1L/Hrd1 loss, establishing that the EDEM2-TXNDC11 arm is substrate-selective rather than a general ERAD requirement.

    Evidence Western blot of NFE2L1 and LOX in TXNDC11/EDEM2 KO vs. SEL1L/Hrd1 KO HEK293 cells with proteasome inhibitor controls

    PMID:41518417 PMID:41656087

    Open questions at the time
    • Single-method (Western blot) negative findings without orthogonal confirmation
    • Rules governing which substrates require the mannose-trimming arm undefined
    • Mechanistic basis of selectivity not addressed

Open questions

Synthesis pass · forward-looking unresolved questions
  • How TXNDC11's thioredoxin/CXXC redox chemistry mechanistically activates EDEM2 mannosidase catalysis, what determines substrate selectivity of the trimming arm, and how its earlier Duox/TPO association relates to its ERAD function remain unresolved.
  • No structure of the EDEM2-TXNDC11 complex
  • Catalytic redox cycle of TXNDC11 not demonstrated
  • Connection between thyroid oxidase binding and gpERAD role unexplained

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140098 catalytic activity, acting on RNA 3 GO:0098772 molecular function regulator activity 2 GO:0140096 catalytic activity, acting on a protein 2
Localization
GO:0005783 endoplasmic reticulum 2
Pathway
R-HSA-392499 Metabolism of proteins 2 R-HSA-8953897 Cellular responses to stimuli 1
Complex memberships
EDEM2-TXNDC11 complex

Evidence

Reading pass · 8 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2004 TXNDC11 (EFP1) was identified as a binding partner of Duox1/Duox2 (thyroid oxidase) proteins via yeast two-hybrid screening using the EF-hand fragment of dog Duox1 as bait. EFP1 belongs to the thioredoxin-related protein family with conserved active site and folding structures. Co-immunoprecipitation confirmed interaction in transfected COS cells and primary human thyrocytes. EFP1 also interacts with TPO but not thyroglobulin. Immunofluorescence showed co-localization of EFP1 and Duox inside transfected cells. EFP1 was not sufficient to induce Duox plasma membrane expression or H2O2 production. Yeast two-hybrid, co-immunoprecipitation, immunofluorescence co-localization The Journal of biological chemistry Medium 15561711
2016 TXNDC11 was identified through parallel genome-wide CRISPR/Cas9 and haploid gene-trap forward genetic screens as required for ERAD of MHC class I molecules. The gene encodes an EDEM2/3-associated disulfide reductase functioning in the canonical glycoprotein ERAD pathway. Genome-wide CRISPR/Cas9 forward genetic screen, haploid gene-trap mutagenesis screen Nature communications Medium 27283361
2018 TXNDC11 associates with EDEM1 and EDEM2 and enhances their mannosidase activity on glycoprotein substrates (but not on free N-glycans). The EDEMs associate with oxidoreductases including protein disulfide isomerase and especially TXNDC11 to enhance glycoprotein mannosidase activity, which is further stimulated when the substrate glycoprotein is in an unfolded/denatured state. In vitro mannosidase activity assay, co-immunoprecipitation, denatured vs. native glycoprotein substrate comparison Communications biology Medium 30374462
2020 EDEM2 forms a stable disulfide bond with TXNDC11 via C558 on EDEM2 (outside the mannosidase homology domain) linked to C692 in the Trx5 domain of TXNDC11 (the sole CXXC motif-containing domain). This covalent disulfide bond is essential for EDEM2 mannosidase activity (Man9GlcNAc2 → Man8GlcNAc2 isomer B) and subsequent gpERAD in HCT116 cells. The purified EDEM2-TXNDC11 complex exhibited α1,2-mannosidase activity in vitro, converting Man9 to Man8B. Gene knockout (HCT116 cells), site-directed mutagenesis of cysteine residues, purification of EDEM2-TXNDC11 complex from transfected cells, in vitro mannosidase activity assay with pyridylamine-labeled substrates eLife High 32065582
2021 EDEM2 stably disulfide-bonded to TXNDC11 is responsible for the first step of sequential N-glycan mannose trimming (M9→M8B) in gpERAD; EDEM3 and EDEM1 are responsible for the subsequent step (M8B→M7/M6/M5). This places TXNDC11-EDEM2 complex as the initiator of the gpERAD oligosaccharide processing route. Genetic epistasis via gene knockout, in vitro mannosidase assay with purified proteins, pyridylamine-labeled oligosaccharide substrates eLife High 34698634
2022 TXNDC11 is an ER stress-inducible gene regulated by the IRE1-sXBP1 pathway: its promoter contains a functional unfolded protein response element (UPRE), and ER stress increases TXNDC11 mRNA and luciferase reporter activity via this UPRE. TXNDC11 deficiency in HEK293 cells increased full-length protein levels and delayed degradation of ER-resident stress sensors ATF6α, CREB3, and CREB3L2, indicating TXNDC11 promotes their turnover. RT-PCR, Western blot, luciferase reporter assay with UPRE, cycloheximide chase in TXNDC11-deficient vs. wild-type HEK293 cells Molecular biology reports Medium 36152228
2026 TXNDC11 deficiency (unlike SEL1L or Hrd1 deficiency) did not increase NFE2L1 protein expression in HEK293 cells, indicating TXNDC11-mediated ERAD is not required for NFE2L1 degradation, in contrast to CREB3/ATF6 family members whose stability is regulated by TXNDC11. ERAD-deficient HEK293 cell lines, Western blot, proteasome inhibitor treatments Biological & pharmaceutical bulletin Low 41656087
2026 LOX protein was not increased in EDEM2- or TXNDC11-deficient HEK293 cells (in contrast to SEL1L- or Hrd1-deficient cells), indicating that the EDEM2-TXNDC11 mannose trimming arm of ERAD is not required for LOX protein regulation. ERAD-deficient HEK293 cell lines (EDEM2 KO, TXNDC11 KO), Western blot, comparison with SEL1L/Hrd1 KO Molecular biology reports Low 41518417

Source papers

Stage 0 corpus · 21 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1994 Characterization of the regulatory elements in the promoter of the human elongation factor-1 alpha gene. The Journal of biological chemistry 67 7961976
2004 Identification of a novel partner of duox: EFP1, a thioredoxin-related protein. The Journal of biological chemistry 59 15561711
2016 Genetic dissection of mammalian ERAD through comparative haploid and CRISPR forward genetic screens. Nature communications 58 27283361
2018 Mannosidase activity of EDEM1 and EDEM2 depends on an unfolded state of their glycoprotein substrates. Communications biology 46 30374462
2020 EDEM2 stably disulfide-bonded to TXNDC11 catalyzes the first mannose trimming step in mammalian glycoprotein ERAD. eLife 38 32065582
2019 Identification of hub genes and key pathways associated with the progression of gynecological cancer. Oncology letters 35 31788113
2018 Clinical Significance of the Thioredoxin System and Thioredoxin-Domain-Containing Protein Family in Hepatocellular Carcinoma. Digestive diseases and sciences 25 30288659
2023 Genome-wide identification of RNA modification-related single nucleotide polymorphisms associated with rheumatoid arthritis. BMC genomics 17 36973646
2021 Purified EDEM3 or EDEM1 alone produces determinant oligosaccharide structures from M8B in mammalian glycoprotein ERAD. eLife 15 34698634
2021 Identification of Differentially Expressed Genes in Different Glioblastoma Regions and Their Association with Cancer Stem Cell Development and Temozolomide Response. Journal of personalized medicine 15 34834399
2017 Identification of potential biomarkers in donor cows for in vitro embryo production by granulosa cell transcriptomics. PloS one 14 28403200
2018 Genetic Variants Influencing Plasma Renin Activity in Hypertensive Patients From the PEAR Study (Pharmacogenomic Evaluation of Antihypertensive Responses). Circulation. Genomic and precision medicine 12 29650764
2024 Liver regulatory mechanisms of noncoding variants at lipid and metabolic trait loci. HGG advances 11 38297830
2017 A genome-wide association study for equine recurrent airway obstruction in European Warmblood horses reveals a suggestive new quantitative trait locus on chromosome 13. Animal genetics 11 28737212
2022 Unraveling the surface proteomic profile of multiple myeloma to reveal new immunotherapeutic targets and markers of drug resistance. Cell stress 9 36311892
2022 Expression analysis and functional characterization of thioredoxin domain-containing protein 11. Molecular biology reports 6 36152228
2024 Transcriptomic Analysis Reveals Sixteen Potential Genes Associated with the Successful Differentiation of Antibody-Secreting Cells through the Utilization of Unfolded Protein Response Mechanisms in Robust Responders to the Influenza Vaccine. Vaccines 4 38400120
2026 Loss of SEL1L or Hrd1 increases intrinsic LOX levels in HEK293 cells independently of proteasomal degradation. Molecular biology reports 0 41518417
2026 Regulation of ER-Resident Transcription Factor NFE2L1 in HEK293 Cells. Biological & pharmaceutical bulletin 0 41656087
2026 Therapeutic Targets for Lung Squamous Cell Carcinoma: Proteome-Wide Mendelian Randomization and Potential Drug Prediction. The clinical respiratory journal 0 41842707
2023 High Thioredoxin Domain-Containing Protein 11 Expression Is Associated with Tumour Progression in Glioma. International journal of molecular sciences 0 37686174

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