Affinage

TVP23B

Golgi apparatus membrane protein TVP23 homolog B · UniProt Q9NYZ1

Length
205 aa
Mass
23.6 kDa
Annotated
2026-06-10
7 papers in source corpus 3 papers cited in narrative 5 extracted findings
Cross-family judge faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TVP23B is a trans-Golgi transmembrane protein that maintains the glycosylation capacity of the Golgi apparatus in intestinal epithelial cells, thereby supporting epithelial barrier function (PMID:37339972). It physically binds the Golgi protein YIPF6, and loss of either protein causes a common depletion of glycosylation enzymes from the colonocyte Golgi proteome, linking TVP23B to the maintenance of Golgi enzyme content (PMID:37339972). Through this activity TVP23B controls Paneth cell homeostasis and goblet cell glycosylation, such that its loss reduces antimicrobial peptides and produces a more penetrable mucus layer (PMID:37339972); it is specifically required to form the sterile, bacteria-free inner mucin layer that maintains the host–microbiota balance in vivo (PMID:37339972). Beyond the intestine, knockdown of TVP23B in retinal microvascular endothelial cells enhances migration and tube formation in an NF-κB-dependent manner, as these effects are reversed by the NF-κB inhibitor PDTC, placing TVP23B upstream of NF-κB signaling in these cells (PMID:25221423). The molecular basis by which a Golgi glycosylation regulator restrains NF-κB activation has not been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2014 Medium

    Established the first cellular phenotype for TVP23B (FAM18B), showing it constrains endothelial migration and angiogenic behavior via NF-κB.

    Evidence siRNA knockdown in primary human retinal microvascular endothelial cells with migration, tube-formation, and viability assays plus pharmacological rescue using the NF-κB inhibitor PDTC

    PMID:25221423

    Open questions at the time
    • No molecular link drawn between the Golgi/transmembrane identity of TVP23B and NF-κB activation
    • Direct biochemical targets or signaling intermediates are not identified
    • Effect shown only in one endothelial cell type by knockdown without rescue by re-expression
  2. 2023 Medium

    Defined TVP23B as a trans-Golgi protein required for intestinal barrier function and placed it within a Golgi glycosylation pathway through its partner YIPF6.

    Evidence ENU forward genetic screen identifying a colitis-susceptibility Tvp23b mutation, in vivo loss-of-function characterization of Paneth and goblet cells, co-immunoprecipitation of YIPF6, and Golgi proteomics of TVP23B- and YIPF6-deficient colonocytes

    PMID:37339972

    Open questions at the time
    • Mechanism by which TVP23B/YIPF6 retains or recruits glycosylation enzymes in the Golgi is not resolved
    • The interaction rests on co-immunoprecipitation without reciprocal or structural validation
    • Whether the endothelial NF-κB role and the intestinal glycosylation role share a common molecular mechanism is unaddressed
  3. 2025 Low

    Extended TVP23B function to macrophages, indicating it supports a pro-fibrotic paracrine program relevant to ischemic cardiomyopathy.

    Evidence In vivo macrophage-specific siRNA knockdown via lipidoid nanoparticles in a mouse myocardial infarction model, with cardiac function and fibrosis as phenotypic readouts (preprint)

    PMID:40894159

    Open questions at the time
    • Preprint; no direct molecular mechanism established for TVP23B in macrophages
    • Downstream pro-fibrotic mediators are not identified
    • Cell-type-specific knockdown phenotype not corroborated by genetic deletion or rescue

Open questions

Synthesis pass · forward-looking unresolved questions
  • How TVP23B mechanistically maintains Golgi glycosylation enzyme content and how this connects to NF-κB signaling and macrophage pro-fibrotic programs remains unresolved.
  • No biochemical mechanism linking TVP23B–YIPF6 binding to enzyme retention
  • No unifying model across intestinal, endothelial, and macrophage contexts
  • No structural information on TVP23B or its complex with YIPF6

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Localization
GO:0005794 Golgi apparatus 2
Pathway
R-HSA-392499 Metabolism of proteins 2
Partners

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2023 TVP23B is a trans-Golgi transmembrane protein that controls Paneth cell homeostasis and goblet cell glycosylation function; loss of TVP23B leads to decreased antimicrobial peptides and a more penetrable mucus layer, compromising intestinal barrier integrity. Forward genetic screen (ENU mutagenesis) identifying Tvp23b mutation conferring colitis susceptibility; loss-of-function characterization in vivo with defined cellular phenotypes (Paneth cell homeostasis, goblet cell function) Nature communications Medium 37339972
2023 TVP23B physically binds the Golgi protein YIPF6; both proteins are required for intestinal homeostasis, and their deficiency results in a common reduction of critical glycosylation enzymes in the Golgi proteome of colonocytes. Co-immunoprecipitation / binding interaction identified in the context of Golgi proteomics of TVP23B- and YIPF6-deficient colonocytes Nature communications Medium 37339972
2023 TVP23B is necessary for formation of the sterile (bacteria-free) mucin layer of the intestine; its absence disturbs the in vivo balance between host and microbiota. In vivo loss-of-function (Tvp23b mutant mice) with assessment of mucin layer sterility and host-microbe balance Nature communications Medium 37339972
2014 RNAi-mediated knockdown of FAM18B (TVP23B) in human retinal microvascular endothelial cells (HRMECs) enhances cell migration and tube formation, and exacerbates hyperglycemia-induced decrease in cell viability; these effects are reversed by the NF-κB inhibitor PDTC, placing TVP23B upstream of NF-κB signaling in HRMECs. siRNA knockdown in primary HRMECs with migration assay, tube formation assay, viability assay, and pharmacological rescue with NF-κB inhibitor PDTC Molecular vision Medium 25221423
2025 In vivo macrophage-specific silencing of Tvp23b using lipidoid nanoparticles in mice with myocardial infarction significantly improved cardiac function and suppressed fibrosis, indicating a role for TVP23B in macrophage-driven pro-fibrotic signaling in ischemic cardiomyopathy. In vivo macrophage-specific siRNA knockdown via lipidoid nanoparticles in MI mouse model; cardiac function and fibrosis measured as phenotypic readouts medRxiv : the preprint server for health sciencespreprint Low 40894159

Source papers

Stage 0 corpus · 7 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2001 The 1.4-Mb CMT1A duplication/HNPP deletion genomic region reveals unique genome architectural features and provides insights into the recent evolution of new genes. Genome research 116 11381029
2023 Trans-Golgi protein TVP23B regulates host-microbe interactions via Paneth cell homeostasis and Goblet cell glycosylation. Nature communications 12 37339972
2022 Identification of Candidate Genes for Pigmentation in Camels Using Genotyping-by-Sequencing. Animals : an open access journal from MDPI 9 35565522
2014 Role of FAM18B in diabetic retinopathy. Molecular vision 8 25221423
2026 Transcriptomic integration nominates FOXN2 as a candidate schizophrenia risk gene. Behavioural brain research 0 41616909
2025 Interpretable machine learning coupled to spatial transcriptomics unveils mechanisms of macrophage-driven fibroblast activation in ischemic cardiomyopathy. medRxiv : the preprint server for health sciences 0 40894159
2025 Sequencing Analysis Demonstrates That a Complex Genetic Architecture Contributes to Risk for Spina Bifida. Birth defects research 0 41013918

Missed literature

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