Affinage

TUBGCP5

Gamma-tubulin complex component 5 · UniProt Q96RT8

Length
1024 aa
Mass
118.3 kDa
Annotated
2026-06-10
57 papers in source corpus 12 papers cited in narrative 12 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TUBGCP5 (GCP5) is a structural subunit of the human γ-tubulin ring complex (γ-TuRC), the cellular machine that nucleates microtubules at the centrosome, and it is present as a single copy within the purified, nucleation-competent complex (PMID:11694571). Structural and biochemical work places GCP5 alongside GCP4 and GCP6 in distinct Y-shaped assemblies that mimic the core GCP2/GCP3 subcomplexes and sit distal to the asymmetric 'seam' of the cone-shaped γ-TuRC, helping arrange γ-tubulins into the helical geometry required for nucleation (PMID:31862189). The N-terminal domain of GCP5 defines its identity and mediates lateral association with neighboring GCPs, while exchangeable C-terminal grip domains engage γ-tubulin, with γ-tubulin binding itself dispensable for integration into the helical complex (PMID:27660388, PMID:21725292). GCP5 assembles with two copies of GCP4 and one copy of GCP6 into a salt-resistant sub-complex that forms independently of γ-TuSCs and reconstitutes functional γ-TuRCs when combined with γ-TuSC-containing extracts (PMID:32317396), and GCP5/6-specific extensions, together with NEDD1, anchor the assembled complex to the pericentriolar material (PMID:40074789). Functionally, GCP5 is required for γ-TuRC integrity and for recruitment of γ-tubulin to mitotic spindle poles; it binds GSK-3β directly and acts downstream of GSK-3β to control γ-TuRC localization and proper spindle organization (PMID:18316369). Loss of TUBGCP5 in vivo causes mitotic arrest, disorganized spindles, and p53-dependent loss of hematopoietic stem and progenitor cells (PMID:42092188).

Mechanistic history

Synthesis pass · year-by-year structured walk · 9 steps
  1. 2001 High

    Established that GCP5 is a genuine, single-copy component of the microtubule-nucleating γ-TuRC rather than a loosely associated factor, defining its place in the complex.

    Evidence Mass spectrometry, stoichiometry, immunolocalization and in vitro nucleation of purified human γ-TuRC

    PMID:11694571

    Open questions at the time
    • Did not resolve where GCP5 sits within the complex architecture
    • No domain-level mechanism of how GCP5 contributes to nucleation
  2. 2006 Medium

    Ortholog genetics showed GCP5 is peripherally associated and quantitatively, not qualitatively, required for nucleation, distinguishing it from core γ-TuC subunits.

    Evidence Genetic deletion of mod21 (GCP5 ortholog), co-IP and sucrose gradients in fission yeast

    PMID:17021256

    Open questions at the time
    • Cross-kingdom ortholog inference may not fully translate to human GCP5
    • Did not define molecular interactions at residue or domain level
  3. 2008 High

    Connected GCP5 to a regulatory signaling input by showing it binds GSK-3β and is required for γ-TuRC stability and γ-tubulin recruitment to spindle poles, placing it downstream of GSK-3β.

    Evidence In vitro binding, endogenous co-IP, sucrose gradients, siRNA depletion and epistasis rescue in human cells

    PMID:18316369

    Open questions at the time
    • Whether GSK-3β phosphorylates GCP5 directly not established
    • Mechanism by which GCP5 loss destabilizes the complex not resolved
  4. 2011 High

    Solved the GCP4 crystal structure as a structural prototype for all GCPs including GCP5, defining the conserved C-terminal γ-tubulin-binding architecture.

    Evidence X-ray crystallography, cryo-EM fitting and in vitro binding

    PMID:21725292

    Open questions at the time
    • Direct GCP5 structure inferred rather than solved
    • GCP5-specific extensions and regulatory regions not modeled
  5. 2016 High

    Defined the division of labor between GCP domains, showing GCP5's N-terminal domain confers identity and mediates lateral GCP-GCP association while C-terminal domains are exchangeable.

    Evidence Chimeric domain-swapping and FLIM-FRET in cells

    PMID:27053664 PMID:27660388

    Open questions at the time
    • Functional consequence of GCP5's distinct role versus GCP6 at spindle poles only shown in yeast
    • Lateral interface residues not mapped
  6. 2020 High

    Demonstrated that GCP5 nucleates the formation of a salt-resistant GCP4/5/6 sub-complex that assembles independently and seeds functional γ-TuRC reconstitution.

    Evidence Biochemical purification, salt-resistance and in vitro γ-TuRC reconstitution with nucleation assay

    PMID:32317396

    Open questions at the time
    • Order and kinetics of sub-complex assembly in cells unknown
    • Stoichiometric assembly determinants not defined
  7. 2019 High

    Resolved the native human γ-TuRC at near-atomic resolution, placing GCP5 in a Y-shaped assembly distal to the seam that helps impose nucleation-competent helical geometry.

    Evidence Cryo-EM and pseudo-atomic modeling of native complex

    PMID:31862189

    Open questions at the time
    • How the asymmetric GCP4/5/6 region tunes nucleation efficiency not mechanistically resolved
  8. 2025 High

    Identified GCP5/6-specific extensions as a structural docking point for NEDD1, explaining how the γ-TuRC is anchored to the pericentriolar material.

    Evidence Cryo-electron tomography of γ-TuRCs in cells and purified centrosomes

    PMID:40074789

    Open questions at the time
    • Whether GCP5 versus GCP6 extensions contribute differentially to NEDD1 binding unresolved
  9. 2026 Medium

    Linked TUBGCP5 loss to a physiological outcome, showing it is required for hematopoietic stem cell self-renewal via proper spindle formation.

    Evidence Genetic disruption in zebrafish with time-lapse imaging and lineage tracing

    PMID:42092188

    Open questions at the time
    • TUBGCP5 tested in parallel with other subunits, so subunit-specific contribution not isolated
    • Mechanism linking spindle defect to symmetric differentiation choice not defined

Open questions

Synthesis pass · forward-looking unresolved questions
  • How GCP5-specific regulation (e.g. GSK-3β signaling, mRNA processing) and tissue-specific roles integrate with its conserved structural function in the γ-TuRC remains open.
  • No direct demonstration that GCP5 is a GSK-3β phosphorylation substrate
  • Functional consequence of FASTKD2/EFTUD2 binding to TUBGCP5 mRNA not established
  • Mechanism of TUBGCP5 role in cardiomyocyte differentiation uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 3 GO:0008092 cytoskeletal protein binding 2
Localization
GO:0005815 microtubule organizing center 2 GO:0005856 cytoskeleton 1
Pathway
R-HSA-1640170 Cell Cycle 2 R-HSA-1852241 Organelle biogenesis and maintenance 2
Complex memberships
GCP4/GCP5/GCP6 sub-complexγ-tubulin ring complex (γ-TuRC)

Evidence

Reading pass · 12 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2001 GCP5 (TUBGCP5) was identified as a bona fide subunit of the human γ-tubulin ring complex (γ-TuRC) by mass spectrometry analysis of purified complex. Stoichiometry experiments revealed a single copy of GCP5 within the γ-TuRC. GCP5 localizes to the centrosome and associates with microtubules. The purified human γ-TuRC (containing GCP5) was able to nucleate microtubule polymerization in vitro. Protein purification, mass spectrometry, stoichiometry analysis, immunolocalization, in vitro microtubule nucleation assay Molecular biology of the cell High 11694571
2008 GCP5 (TUBGCP5) directly binds GSK-3β in vitro and their interaction was also observed in intact cells at endogenous levels. Depletion of GCP5 dramatically reduced GCP2 and γ-tubulin in the γ-TuRC fraction of sucrose density gradients and disrupted γ-tubulin localization to spindle poles in mitotic cells, indicating GCP5 is required for γ-TuRC formation/stability and recruitment of γ-tubulin to spindle poles. GSK-3 inhibition accumulated γ-tubulin and GCP5 at spindle poles and enhanced microtubule nucleation; GCP5 depletion rescued the disrupted spindle pole organization caused by GSK-3 inhibitor, placing GCP5 downstream of GSK-3β in controlling γ-TuRC localization to spindle poles. In vitro binding assay, co-immunoprecipitation at endogenous levels, sucrose density gradient fractionation, siRNA depletion, immunofluorescence, genetic epistasis (rescue experiment) The Journal of biological chemistry High 18316369
2011 The crystal structure of human GCP4 was solved and shown to be the structural prototype for all GCPs including GCP5, with its C-terminal domain binding directly to γ-tubulin. The GCP4 structure was precisely positioned within the γ-TuSC cryo-EM envelope, revealing the nature of protein-protein interactions and conformational changes regulating nucleation activity. X-ray crystallography, cryo-EM fitting, in vitro binding Nature structural & molecular biology High 21725292
2016 Using chimeric GCP proteins with swapped N- and C-terminal domains, the N-terminal domain of GCP5 (and other GCPs) was shown to define the functional identity and mediate lateral association within the γ-TuRC, while C-terminal domains are exchangeable and mediate longitudinal interactions with γ-tubulin. FLIM-FRET experiments confirmed that GCP4 and GCP5 associate laterally within the complex via their N-terminal domains. Binding to γ-tubulin was shown to be not essential for integrating into the helical complex. Chimeric protein domain-swapping, FLIM-FRET, functional complementation assays The Journal of biological chemistry High 27660388
2019 Cryo-EM reconstruction of native human γ-TuRC at ~3.8 Å resolution revealed that GCP4, GCP5, and GCP6 form distinct Y-shaped assemblies that structurally mimic GCP2/GCP3 subcomplexes, positioned distal to the γ-TuRC 'seam.' GCP5 contributes to an asymmetric, cone-shaped complex that arranges γ-tubulins into a helical geometry poised to nucleate microtubules. Cryo-EM, pseudo-atomic modeling, native complex purification Cell High 31862189
2020 GCP5 forms a salt (KCl)-resistant sub-complex together with two copies of GCP4 and one copy of GCP6 within the γ-TuRC, and this sub-complex assembles independently of γ-TuSCs. Incubation of this GCP4/GCP5/GCP6 sub-complex with cytoplasmic extracts containing γ-TuSCs leads to reconstitution of γ-TuRCs competent to nucleate microtubules in vitro. Biochemical purification, salt-resistance assay, in vitro γ-TuRC reconstitution, microtubule nucleation assay Journal of cell science High 32317396
2006 In fission yeast, mod21p (the GCP5 ortholog) is a bona fide γ-TuC protein. mod21Δ mutants are viable and show quantitatively reduced microtubule nucleation from interphase MTOCs but not qualitatively absent nucleation. Co-immunoprecipitation suggests that mod21p (GCP5 ortholog) is more peripherally associated with the core γ-TuC than gfh1p (GCP4 ortholog) and alp16p (GCP6 ortholog), and that gfh1p and mod21p may form a subcomplex independently of the small γ-TuC. Genetic deletion, in vivo microtubule nucleation quantification, co-immunoprecipitation, sucrose gradient sedimentation Molecular biology of the cell Medium 17021256
2016 In fission yeast, Mod21 (GCP5 ortholog) deletion alone does not reduce γ-TuSC levels at mitotic spindle pole bodies, and Mod21 is not required for Alp16(GCP6)-dependent γ-TuRC recruitment to mitotic SPBs. This establishes that, among the non-core γ-TuRC components, GCP5 ortholog has a functionally distinct (and less critical) role at mitotic SPBs compared to GCP6 ortholog. Genetic deletion, quantitative fluorescence microscopy at spindle pole bodies Molecular biology of the cell Medium 27053664
2025 Cryo-electron tomography of γ-TuRCs in human cells and purified centrosomes showed that NEDD1 forms a tetrameric structure at the γ-TuRC base through interactions with four GCP3/MZT1 modules and GCP5/6-specific extensions, anchoring the γ-TuRC to the pericentriolar material. Cryo-electron tomography, structural modeling of purified centrosomes Nature communications High 40074789
2026 Disruption of TUBGCP5 (along with other γ-TuRC subunits Tubgcp3, Tubgcp4, and Tubgcp6) in zebrafish produces similar hematopoietic defects: mitotic arrest, disorganized spindle formation, increased p53-dependent apoptosis, and hematopoietic stem and progenitor cell exhaustion due to preferential symmetric differentiation over self-renewal. Genetic disruption in zebrafish, time-lapse imaging, lineage tracing, spindle morphology analysis Communications biology Medium 42092188
2023 RNA-binding proteins FASTKD2 and EFTUD2 interact with exon-intron junction sequences of TUBGCP5 mRNA, as validated by combined EMSA and western blotting, suggesting their potential involvement in splicing of TUBGCP5 pre-mRNA. eCLIP data analysis, EMSA, western blotting Functional & integrative genomics Low 37219715
2020 Knockdown of TUBGCP5 in induced pluripotent stem cell-derived cardiomyocytes led to abnormal cardiomyocyte differentiation, implicating TUBGCP5 in cardiomyocyte development. siRNA knockdown in iPSC-derived cardiomyocytes, transcriptomic analysis Journal of medical genetics Low 32376791

Source papers

Stage 0 corpus · 57 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2003 Identification of four highly conserved genes between breakpoint hotspots BP1 and BP2 of the Prader-Willi/Angelman syndromes deletion region that have undergone evolutionary transposition mediated by flanking duplicons. American journal of human genetics 171 14508708
2001 GCP5 and GCP6: two new members of the human gamma-tubulin complex. Molecular biology of the cell 154 11694571
2019 Asymmetric Molecular Architecture of the Human γ-Tubulin Ring Complex. Cell 109 31862189
2006 Expression of 4 genes between chromosome 15 breakpoints 1 and 2 and behavioral outcomes in Prader-Willi syndrome. Pediatrics 87 16982806
2004 Phenotypic variability in Angelman syndrome: comparison among different deletion classes and between deletion and UPD subjects. European journal of human genetics : EJHG 87 15470370
2017 Clinical and genetic aspects of the 15q11.2 BP1-BP2 microdeletion disorder. Journal of intellectual disability research : JIDR 75 28387067
2015 15q11.2 microdeletion (BP1-BP2) and developmental delay, behaviour issues, epilepsy and congenital heart disease: a series of 52 patients. European journal of medical genetics 75 25596525
2011 Crystal structure of γ-tubulin complex protein GCP4 provides insight into microtubule nucleation. Nature structural & molecular biology 71 21725292
2005 Microarray based comparative genomic hybridization testing in deletion bearing patients with Angelman syndrome: genotype-phenotype correlations. Journal of medical genetics 71 16183798
2016 DNA Methylation Profiling of Uniparental Disomy Subjects Provides a Map of Parental Epigenetic Bias in the Human Genome. American journal of human genetics 63 27569549
2007 Detection of a novel familial deletion of four genes between BP1 and BP2 of the Prader-Willi/Angelman syndrome critical region by oligo-array CGH in a child with neurological disorder and speech impairment. Cytogenetic and genome research 62 17268193
2008 Array comparative genomic hybridization (aCGH) analysis in Prader-Willi syndrome. American journal of medical genetics. Part A 61 18266248
2011 Longitudinal follow-up of autism spectrum features and sensory behaviors in Angelman syndrome by deletion class. Journal of child psychology and psychiatry, and allied disciplines 52 21831244
2006 Noncore components of the fission yeast gamma-tubulin complex. Molecular biology of the cell 51 17021256
2020 The 15q11.2 BP1-BP2 Microdeletion (Burnside-Butler) Syndrome: In Silico Analyses of the Four Coding Genes Reveal Functional Associations with Neurodevelopmental Phenotypes. International journal of molecular sciences 46 32384786
2012 Genome-wide survey of large rare copy number variants in Alzheimer's disease among Caribbean hispanics. G3 (Bethesda, Md.) 45 22384383
2017 Placental imprinting variation associated with assisted reproductive technologies and subfertility. Epigenetics 41 28621618
2018 Long non-coding RNA Hotair promotes gastric cancer progression via miR-217-GPC5 axis. Life sciences 40 30557546
2023 Prader-Willi Syndrome and Chromosome 15q11.2 BP1-BP2 Region: A Review. International journal of molecular sciences 39 36901699
2016 Recurrent 15q11.2 BP1-BP2 microdeletions and microduplications in the etiology of neurodevelopmental disorders. American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 39 27566550
2008 GSK-3beta regulates proper mitotic spindle formation in cooperation with a component of the gamma-tubulin ring complex, GCP5. The Journal of biological chemistry 39 18316369
2007 Mammary tumor modifiers in BALB/cJ mice heterozygous for p53. Mammalian genome : official journal of the International Mammalian Genome Society 36 17557176
2015 Genetic and morphological features of human iPSC-derived neurons with chromosome 15q11.2 (BP1-BP2) deletions. Molecular neuropsychiatry 35 26528485
2018 Rare missense TUBGCP5 gene variant in a patient with primary microcephaly. European journal of medical genetics 28 30543990
2014 Short stature, digit anomalies and dysmorphic facial features are associated with the duplication of miR-17 ~ 92 cluster. Molecular cytogenetics 27 24739087
2015 γ-Tubulin complex in Trypanosoma brucei: molecular composition, subunit interdependence and requirement for axonemal central pair protein assembly. Molecular microbiology 24 26224545
2016 Functional Analysis of γ-Tubulin Complex Proteins Indicates Specific Lateral Association via Their N-terminal Domains. The Journal of biological chemistry 23 27660388
2013 Clinical and genetic study of a family with a paternally inherited 15q11-q13 duplication. American journal of medical genetics. Part A 22 23633446
2016 Synergistic role of fission yeast Alp16GCP6 and Mzt1MOZART1 in γ-tubulin complex recruitment to mitotic spindle pole bodies and spindle assembly. Molecular biology of the cell 20 27053664
2019 Magnesium Supplement and the 15q11.2 BP1-BP2 Microdeletion (Burnside-Butler) Syndrome: A Potential Treatment? International journal of molecular sciences 19 31207912
2020 A stable sub-complex between GCP4, GCP5 and GCP6 promotes the assembly of γ-tubulin ring complexes. Journal of cell science 18 32317396
2021 Genomic, Clinical, and Behavioral Characterization of 15q11.2 BP1-BP2 Deletion (Burnside-Butler) Syndrome in Five Families. International journal of molecular sciences 13 33562221
2020 Asymmetric distribution of pallial-expressed genes in zebrafish (Danio rerio). The European journal of neuroscience 13 32692463
2018 Prenatal diagnosis of a familial 15q11.2 (BP1-BP2) microdeletion encompassing TUBGCP5, CYFIP1, NIPA2 and NIPA1 in a fetus with ventriculomegaly, microcephaly and intrauterine growth restriction on prenatal ultrasound. Taiwanese journal of obstetrics & gynecology 12 30342661
2015 Molecular modeling reveals binding interface of γ-tubulin with GCP4 and interactions with noscapinoids. Proteins 12 25662919
2025 Structural mechanisms for centrosomal recruitment and organization of the microtubule nucleator γ-TuRC. Nature communications 11 40074789
2023 Cardiorespiratory fitness and targeted proteomics involved in brain and cardiovascular health in children with overweight/obesity. European journal of sport science 11 36622372
2020 15q11.2 deletion is enriched in patients with total anomalous pulmonary venous connection. Journal of medical genetics 10 32376791
2021 Prenatal diagnosis of a 15q11.2-q14 deletion of paternal origin associated with increased nuchal translucency, mosaicism for de novo multiple unbalanced translocations involving 15q11-q14, 5qter, 15qter, 17pter and 3qter and Prader-Willi syndrome. Taiwanese journal of obstetrics & gynecology 9 33678338
2024 Comprehensive serum proteomics profiles and potential protein biomarkers for the early detection of advanced adenoma and colorectal cancer. World journal of gastrointestinal oncology 6 39072170
2023 Association of muscular strength and targeted proteomics involved in brain health in children with overweight/obesity. Scandinavian journal of medicine & science in sports 6 37190796
2021 Prenatal diagnosis of maternal uniparental disomy 16 associated with mosaic trisomy 16 at amniocentesis, and pericardial effusion and intrauterine growth restriction in the fetus. Taiwanese journal of obstetrics & gynecology 6 33966743
2021 Mining massive genomic data of two Swiss Braunvieh cattle populations reveals six novel candidate variants that impair reproductive success. Genetics, selection, evolution : GSE 6 34915862
2023 A novel strain of Shigella isolated from the gut of Lepidocephalichthys guntea has in its genome a complete gene package for Type ll secretion system, and elaborate repertoire of genes responsible for multiple antibiotic-resistance and metal resistance via specific efflux channels. Letters in applied microbiology 5 36688776
2024 Associations between multiple neurological biomarkers and distal sensorimotor polyneuropathy: KORA F4/FF4 study. Diabetes/metabolism research and reviews 2 38872492
2025 Classic Prader-Willi Syndrome Phenotype Caused by an Atypical Deletion in the 15q11 Region Not Involving the SNORD Genes. Clinical genetics 1 40200592
2025 Inbreeding patterns and genetic diversity under selection in Teha sheep. Frontiers in genetics 1 40656594
2026 Family-Based Interpretation of a Prenatally Detected 15q11.2 Duplication. Cureus 0 41873278
2026 The γ-Tubulin Ring Complex promotes mitotic spindle integrity and acts as a microtubule minus-end cap during mitosis. bioRxiv : the preprint server for biology 0 41993551
2026 Mutation of Tubgcp6 induces hematopoietic stem and progenitor cell exhaustion in zebrafish. Communications biology 0 42092188
2026 A young girl with partial chromosome 15q11.2 microduplication: a case report in Cameroon. BMC pediatrics 0 42237104
2025 Early-Onset 15q11.2 Microdeletion Syndrome in a Six-Year-Old Child: A Case Report of Refractory Epilepsy, Autism, and Multisystem Manifestations. Cureus 0 40843057
2025 Case Report: Synergistic effects of an ASXL3 mutation and a 15q11.2 BP1-BP2 microdeletion in a severe neurodevelopmental phenotype. Frontiers in genetics 0 41458212
2024 Intrauterine ultrasound phenotyping, molecular characteristics, and postnatal follow-up of fetuses with the 15q11.2 BP1-BP2 microdeletion syndrome: a single-center, retrospective clinical study. BMC pregnancy and childbirth 0 38172840
2023 Deciphering the RNA-binding protein interaction with the mRNAs encoded from human chromosome 15q11.2 BP1-BP2 microdeletion region. Functional & integrative genomics 0 37219715
2022 Advances in genetic mechanisms of hypothalamic dysfunction in Prader-Willi syndrome. Yi chuan = Hereditas 0 36384726
2020 Prenatal diagnosis of a familial normal euchromatic variant of dup(15)(q11.2q11.2) in a pregnancy with a favorable outcome. Taiwanese journal of obstetrics & gynecology 0 32917335

Missed literature

Know a paper Affinage missed for TUBGCP5? Flag it for the maintainers and the community.

No submissions yet.