Affinage

TTYH2

Protein tweety homolog 2 · UniProt Q9BSA4

Length
534 aa
Mass
58.8 kDa
Annotated
2026-06-10
17 papers in source corpus 10 papers cited in narrative 10 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TTYH2 is a five-transmembrane domain protein with an extracellular N-terminus and cytoplasmic C-terminus that localizes to the plasma membrane and endosomal compartments and acts as a facilitator of lipid transfer at endosomal membranes (PMID:40562935, PMID:18260827). Cryo-EM structures revealed an extended extracellular domain bearing a partially solvent-exposed hydrophobic pocket; in the presence of Ca2+ TTYH2 assembles into cis-dimers bridged by extracellularly coordinated Ca2+, while in its absence it forms trans-dimers spanning opposing membranes across ~130 Å and a monomeric state, providing a Ca2+-regulated conformational basis for membrane bridging (PMID:34824283). The extended extracellular domain forms an epitope that faces the endosomal lumen and binds APOE-containing lipoprotein particles, and TTYH2 accelerates lipid extraction and insertion from these lipoproteins into membranes in reconstituted assays (PMID:40562935). TTYH2 surface and total abundance are controlled by post-translational and trafficking machinery: Nedd4-2 binds the TTYH2 PY motif and ubiquitinates it to regulate surface and cellular levels (PMID:18577513), N-glycosylation modulates expression and ubiquitination without being essential for plasma-membrane delivery (PMID:18260827), and β-COP binds the C-terminal region to negatively regulate TTYH2 surface trafficking (PMID:30670146). Although earlier electrophysiology proposed TTYH2 as a pore-forming subunit of volume-regulated anion channels (PMID:31138989, PMID:31181821), the cryo-EM structures showed no ion-conducting pathway and detected no TTYH2-dependent channel activity, arguing against a pore-forming role (PMID:34824283). TTYH2 also serves as a glycan-dependent binding partner of the SARS-CoV-2 spike receptor-binding domain that drives proinflammatory responses in myeloid cells without supporting viral replication (PMID:34048708).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 2007 Low

    Established an initial cellular phenotype for TTYH2 by asking whether it contributes to cancer cell behavior.

    Evidence siRNA knockdown with proliferation and aggregation assays in DLD-1 and Caco-2 colon cancer cells

    PMID:17569141

    Open questions at the time
    • No molecular mechanism identified
    • Single knockdown approach without rescue
    • Does not connect phenotype to a defined biochemical activity
  2. 2008 High

    Defined how TTYH2 abundance and surface levels are post-translationally controlled, identifying its first regulatory partner.

    Evidence Endogenous co-IP, PY-motif mutagenesis, and ubiquitination/surface expression assays for Nedd4-2 binding; N-glycosylation site mutagenesis establishing five-TM topology

    PMID:18260827 PMID:18577513

    Open questions at the time
    • Did not establish the molecular function being regulated
    • Physiological context of ubiquitin turnover unclear
    • N-glycosylation role only partially defined
  3. 2019 Medium

    Tested the long-standing hypothesis that TTYH2 is an ion channel and concurrently identified a trafficking regulator.

    Evidence Whole-cell patch-clamp with gene silencing and heterologous reconstitution in astrocytes and cancer cells; Y2H and co-IP for β-COP binding with surface/activity readouts

    PMID:30670146 PMID:31138989 PMID:31181821

    Open questions at the time
    • Channel assignment later contradicted by structural data
    • Pore residue mutagenesis not reconciled with absence of a conducting pathway
    • β-COP regulatory mechanism characterized only in heterologous and cancer-cell systems
  4. 2019 Low

    Linked TTYH2 to migratory and EMT-related signaling, extending its cancer-cell role beyond proliferation.

    Evidence siRNA silencing with invasion/migration assays and western blot for Slug and ZEB1 in U2OS cells

    PMID:31230749

    Open questions at the time
    • Single knockdown approach in one cell line
    • Mechanism upstream of EMT factors undefined
    • No direct biochemical link to lipid-transfer function
  5. 2021 High

    Resolved the structural fold and overturned the channel model, redefining TTYH2 as a Ca2+-regulated membrane-bridging protein.

    Evidence Cryo-EM in lipid nanodiscs capturing cis-dimer, trans-dimer, and monomeric states with cellular electrophysiology controls

    PMID:34824283

    Open questions at the time
    • Functional output of the conformational switch not defined at this stage
    • Endogenous ligand of the hydrophobic pocket unknown
    • Physiological trigger for cis/trans transition in cells unresolved
  6. 2021 Medium

    Identified an unexpected role for TTYH2 as a glycan-dependent spike-binding partner that drives inflammation.

    Evidence Myeloid receptor-focused ectopic expression screen with binding, replication, and cytokine assays

    PMID:34048708

    Open questions at the time
    • Relationship to endogenous lipid-transfer function unclear
    • Glycan dependence not structurally mapped
    • Single study without orthogonal in vivo validation
  7. 2025 High

    Assigned a concrete molecular function by identifying APOE as the endogenous partner and demonstrating lipid transfer.

    Evidence Endogenous pull-down, fractionation, immunocytochemistry, structural mapping of the lumen-facing epitope, and in vitro lipid transfer assays

    PMID:40562935

    Open questions at the time
    • Directionality and physiological cargo of lipid transfer in vivo not fully defined
    • Connection between Ca2+-driven cis/trans switch and lipid transfer mechanism not explicitly resolved
    • Downstream consequences of endosomal lipid handling uncharacterized

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the Ca2+-regulated conformational switch, trafficking control, and APOE-dependent lipid transfer integrate into a defined physiological pathway remains open.
  • No in vivo demonstration linking lipid-transfer activity to a tissue-level phenotype
  • Mechanistic coupling of cis/trans transition to lipid extraction undefined
  • Reconciliation of cancer-cell phenotypes with the lipid-transfer model unresolved

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008289 lipid binding 1 GO:0140313 molecular sequestering activity 1
Localization
GO:0005886 plasma membrane 3 GO:0005768 endosome 1
Pathway
R-HSA-1430728 Metabolism 1
Partners

Evidence

Reading pass · 10 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2021 Cryo-EM structures of mouse TTYH2 and TTYH3 in lipid nanodiscs revealed a previously unobserved fold with an extended extracellular domain containing a partially solvent-exposed hydrophobic pocket. In the presence of Ca2+, TTYH2 forms homomeric cis-dimers bridged by extracellularly coordinated Ca2+. In the absence of Ca2+, TTYH2 forms trans-dimers spanning opposing membranes across ~130 Å intermembrane space as well as a monomeric state. No ion-conducting pathways were observed in any structure, and no TTYH2-dependent channel activity was detected in cells, indicating TTYHs are not pore-forming subunits of anion channels. Cryo-EM structural determination in lipid nanodiscs; electrophysiology in cells Nature communications High 34824283
2025 TTYH2 interacts with APOE (apolipoprotein E) as its endogenous binding partner; both proteins colocalize in endosomal compartments. Structural studies identified an epitope in an extended extracellular domain of TTYH2 that faces the endosomal lumen and binds APOE-containing lipoprotein particles. In vitro assays demonstrated that TTYH2 accelerates lipid transfer from APOE-containing lipoproteins into membranes, establishing TTYH2 as a facilitator of lipid extraction and insertion at endosomal membranes. Pull-down of endogenous proteins; subcellular fractionation; immunocytochemistry; binding assays; structural studies; in vitro lipid transfer assays Nature High 40562935
2008 Nedd4-2 (a HECT-type E3 ubiquitin ligase) binds to TTYH2 via its PY motif ((L/P)PXY consensus), ubiquitinates TTYH2, and this ubiquitination regulates both cell surface and total cellular levels of TTYH2. Endogenous TTYH2 and Nedd4-2 were confirmed as binding partners, and the TTYH2 PY motif was shown to be essential for this interaction. Nedd4-2 does not bind TTYH1, which lacks the PY motif. Co-immunoprecipitation of endogenous proteins; ubiquitination assays; PY-motif mutagenesis; cell surface expression assays The Journal of biological chemistry High 18577513
2008 N-glycosylation of TTYH2 is important but not essential for plasma membrane trafficking; incomplete N-glycosylation mediates reduced expression and increased ubiquitination of TTYH2, but is not the determining factor for TTYH2 trafficking to the plasma membrane. N-glycosylation site mutagenesis supports a five transmembrane domain topology with an extracellular N-terminus and cytoplasmic C-terminus. N-glycosylation site mutagenesis; glycosylation analysis; cell surface expression assays; ubiquitination assays The Biochemical journal Medium 18260827
2019 β-COP, a vesicle transport protein, was identified as a direct binding partner of TTYH2 via yeast two-hybrid screening using the TTYH2 C-terminal region as bait, confirmed by in vitro and in vivo binding assays. Co-expression of β-COP with TTYH2 decreased TTYH2 surface expression and channel activity in heterologous systems. In LoVo colon cancer cells, endogenous β-COP associated with TTYH2, and β-COP overexpression dramatically decreased surface expression and activity of endogenous TTYH2, indicating β-COP regulates TTYH2 trafficking to the plasma membrane. Yeast two-hybrid screening; in vitro and in vivo binding assays; co-immunoprecipitation of endogenous proteins; surface expression assays; electrophysiology BMB reports Medium 30670146
2019 TTYH2 (along with TTYH1) functions as a pore-forming subunit of volume-regulated anion channels (VRACs) in astrocytes. Gene silencing of all three Ttyh1/2/3 eliminated hypo-osmotic-solution-induced Cl- conductance (ICl,swell) in astrocytes. Heterologous expression of TTYH2 in HEK293T or CHO-K1 cells reconstituted ICl,swell with similar pharmacological properties and glutamate permeability as native astrocytic VRACs. Mutagenesis revealed that a positively charged arginine at position 164 in TTYH2 is critical for channel pore formation. Gene silencing (shRNA/siRNA); heterologous expression; whole-cell patch-clamp electrophysiology; site-directed mutagenesis of pore residue Experimental neurobiology Medium 31138989
2019 TTYH1 and TTYH2 are critical for LRRC8A-independent VRAC currents in cancer cells. VRAC currents were absent from TTYH1- and TTYH2-deficient SNU-601 gastric cancer cells and restored by expression of either TTYH1 or TTYH2. TTYH2 expression was suppressed by cisplatin resistance and partially restored by histone deacetylase inhibitor treatment. Gene silencing; heterologous rescue expression; whole-cell patch-clamp electrophysiology; microarray expression profiling Cells Medium 31181821
2021 TTYH2 acts as a glycan-dependent binding partner of the SARS-CoV-2 spike protein, interacting via the receptor-binding domain region, as identified by a myeloid cell receptor-focused ectopic expression screen. TTYH2 engagement with SARS-CoV-2 does not support active viral replication but induces proinflammatory responses in myeloid cells. Ectopic expression screen; binding assays; replication assays; cytokine/inflammatory response measurements Immunity Medium 34048708
2019 siRNA-mediated silencing of TTYH2 in U2OS osteosarcoma cells decreased invasion and migration (but not proliferation), and reduced expression of EMT transcription factors Slug and ZEB1, placing TTYH2 upstream of EMT-related signaling in these cells. siRNA gene silencing; invasion and migration assays; western blot for Slug and ZEB1 Biochemical and biophysical research communications Low 31230749
2007 siRNA-mediated knockdown of TTYH2 in DLD-1 and Caco-2 colon cancer cell lines significantly inhibited both cell proliferation and cell aggregation/scattering, demonstrating TTYH2 functional roles in these cellular processes. siRNA knockdown; MTT proliferation assay; cell aggregation assay World journal of gastroenterology Low 17569141

Source papers

Stage 0 corpus · 17 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2021 SARS-CoV-2 exacerbates proinflammatory responses in myeloid cells through C-type lectin receptors and Tweety family member 2. Immunity 138 34048708
2019 Tweety-homolog (Ttyh) Family Encodes the Pore-forming Subunits of the Swelling-dependent Volume-regulated Anion Channel (VRACswell) in the Brain. Experimental neurobiology 43 31138989
2001 TTYH2, a human homologue of the Drosophila melanogaster gene tweety, is located on 17q24 and upregulated in renal cell carcinoma. Genomics 33 11597145
2016 A Genome-wide study of blood pressure in African Americans accounting for gene-smoking interaction. Scientific reports 29 26752167
2007 TTYH2, a human homologue of the Drosophila melanogaster gene tweety, is up-regulated in colon carcinoma and involved in cell proliferation and cell aggregation. World journal of gastroenterology 29 17569141
2019 TTYH1 and TTYH2 Serve as LRRC8A-Independent Volume-Regulated Anion Channels in Cancer Cells. Cells 28 31181821
2019 Disruption of the Extracellular Matrix Progressively Impairs Central Nervous System Vascular Maturation Downstream of β-Catenin Signaling. Arteriosclerosis, thrombosis, and vascular biology 28 31242033
2008 The ubiquitin-protein ligase Nedd4-2 differentially interacts with and regulates members of the Tweety family of chloride ion channels. The Journal of biological chemistry 28 18577513
2014 Characterization of tweety gene (ttyh1-3) expression in Xenopus laevis during embryonic development. Gene expression patterns : GEP 25 25541457
2021 Structures of tweety homolog proteins TTYH2 and TTYH3 reveal a Ca2+-dependent switch from intra- to intermembrane dimerization. Nature communications 20 34824283
2008 N-glycosylation analysis of the human Tweety family of putative chloride ion channels supports a penta-spanning membrane arrangement: impact of N-glycosylation on cellular processing of Tweety homologue 2 (TTYH2). The Biochemical journal 19 18260827
2021 The tweety Gene Family: From Embryo to Disease. Frontiers in molecular neuroscience 14 34262434
2019 Upregulated TTYH2 expression is critical for the invasion and migration of U2OS human osteosarcoma cell lines. Biochemical and biophysical research communications 14 31230749
2021 The Role of Chloride Channels in the Multidrug Resistance. Membranes 12 35054564
2019 Surface expression of TTYH2 is attenuated by direct interaction with β-COP. BMB reports 9 30670146
2025 Interactions between TTYH2 and APOE facilitate endosomal lipid transfer. Nature 5 40562935
2024 Association Between COVID-19 and Neurological Diseases: Evidence from Large-Scale Mendelian Randomization Analysis and Single-Cell RNA Sequencing Analysis. Molecular neurobiology 3 38300446

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