Affinage

TRAPPC11

Trafficking protein particle complex subunit 11 · UniProt Q7Z392

Length
1133 aa
Mass
128.9 kDa
Annotated
2026-06-10
21 papers in source corpus 8 papers cited in narrative 8 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TRAPPC11 is a subunit of the multiprotein TRAPP complex that mediates anterograde membrane trafficking, with a particular requirement for cargo exit from the Golgi to the cell surface (PMID:23830518). Disease-causing mutations in its C-terminal domains, including the foie gras and gryzun regions, impair TRAPPC11 binding to other TRAPP components and disrupt Golgi architecture, producing a dual defect in ER-to-Golgi transport and delayed Golgi-to-plasma-membrane exit (PMID:23830518, PMID:31575891). Beyond bulk trafficking, TRAPPC11 is uniquely required among TRAPP subunits for lipid-linked oligosaccharide (LLO) biosynthesis and protein N-glycosylation: its loss reduces LLO levels, drives compensatory up-regulation of the terpenoid (dolichol) pathway, and causes protein hypoglycosylation that phenocopies a stressed unfolded protein response (PMID:26912795). This glycosylation deficit affects specific substrates including the lysosomal membrane glycoproteins LAMP1/LAMP2, ICAM-1, and α-dystroglycan, the last linking TRAPPC11 loss to the dystroglycanopathy spectrum and to N-linked congenital disorders of glycosylation affecting muscle and brain (PMID:23830518, PMID:29855340, PMID:34648194, PMID:38564972). TRAPPC11 deficiency additionally disrupts autophagic flux and mitochondrial ATP production and network architecture, in a domain-dependent manner (PMID:31575891, PMID:37197784). Recessive TRAPPC11 mutations cause a congenital disorder of glycosylation presenting with muscular dystrophy and neuropathology (PMID:29855340, PMID:34648194).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2013 High

    Established TRAPPC11 as a bona fide TRAPP complex subunit and showed that patient mutations act by disrupting complex assembly and Golgi-exit trafficking, defining the molecular basis of disease.

    Evidence Co-immunoprecipitation of TRAPP components and trafficking/Golgi-morphology assays with two patient mutations in fibroblasts

    PMID:23830518

    Open questions at the time
    • Which TRAPP subunits TRAPPC11 directly contacts not resolved
    • No structural model of the binding interface
    • Mechanism linking complex disruption to delayed Golgi exit unknown
  2. 2016 High

    Revealed a TRAPPC11-specific role in LLO biosynthesis and N-glycosylation distinct from its trafficking function, connecting TRAPP to the glycosylation machinery.

    Evidence Zebrafish mutant LLO quantification, terpenoid-pathway qRT-PCR, pharmacological phenocopy, and selective siRNA depletion of individual TRAPP subunits in human cells

    PMID:26912795

    Open questions at the time
    • Direct biochemical link between TRAPPC11 and LLO synthesis enzymes not established
    • Mechanism of UPR activation downstream of hypoglycosylation unclear
    • Cause of lipid droplet accumulation not defined
  3. 2016 Medium

    Confirmed in an independent patient that reduced full-length TRAPPC11 produces both impaired Golgi arrival and exit alongside LAMP1 hypoglycosylation, reinforcing the dual trafficking/glycosylation phenotype.

    Evidence Western blot, trafficking marker assays, and LAMP1 glycosylation immunofluorescence in patient fibroblasts with a splice mutation

    PMID:27707803

    Open questions at the time
    • Single lab, single patient
    • No reconstitution of LLO/glycosylation defect
    • Residual full-length protein levels not quantitatively linked to phenotype severity
  4. 2018 Medium

    Connected TRAPPC11 to the dystroglycanopathies by demonstrating α-dystroglycan hypoglycosylation, broadening the disease classification to include a membrane trafficking gene.

    Evidence Immunofluorescence and western blot for α-dystroglycan in muscle biopsy plus live-cell trafficking in patient fibroblasts

    PMID:29855340

    Open questions at the time
    • Whether α-dystroglycan defect is direct or secondary to general hypoglycosylation unknown
    • Single lab
    • No tissue-specific mechanism for muscle vulnerability
  5. 2019 Medium

    Mapped functional contributions to specific TRAPPC11 domains, showing the C-terminus and foie gras domain are required for autophagic flux whereas the Gly980Arg variant spares autophagy, establishing domain-specific roles.

    Evidence Trafficking, glycosylation, and autophagic flux (LC3-II ± bafilomycin) assays across distinct patient variants

    PMID:31575891

    Open questions at the time
    • Molecular mechanism linking TRAPPC11 to autophagic flux unknown
    • Single lab
    • Structural basis for domain-specific effects not determined
  6. 2021 Medium

    Extended the glycosylation defect to brain tissue including Purkinje cells and dentate neurons, framing TRAPPC11-opathy as an N-linked CDG with central nervous system involvement.

    Evidence Trafficking assays and IIH6 α-dystroglycan immunofluorescence in muscle biopsy and post-mortem brain plus western blot

    PMID:34648194

    Open questions at the time
    • Neuron-specific mechanism not addressed
    • Single lab
    • Causality between trafficking defect and neuropathology not demonstrated
  7. 2023 Low

    Expanded TRAPPC11 function beyond trafficking and glycosylation by linking deficiency to impaired mitochondrial ATP production and altered network architecture.

    Evidence Mitochondrial ATP production assays and network imaging in patient-derived cells

    PMID:37197784

    Open questions at the time
    • Single lab, single study with limited mechanistic follow-up
    • Whether mitochondrial defect is direct or secondary unknown
    • No molecular pathway connecting TRAPPC11 to mitochondria
  8. 2024 Low

    Reaffirmed the CDG classification by showing defective ER-to-Golgi transport with reduced LAMP2 and ICAM-1 glycoprotein expression in a further patient.

    Evidence Membrane trafficking assays and western blot/immunofluorescence for LAMP2 and ICAM-1 in patient fibroblasts

    PMID:38564972

    Open questions at the time
    • Single patient, single lab
    • Replicates prior findings without new mechanistic depth
    • Selectivity of affected glycoproteins not explained

Open questions

Synthesis pass · forward-looking unresolved questions
  • The biochemical mechanism by which TRAPPC11 uniquely promotes LLO biosynthesis, and how its loss propagates to autophagy and mitochondrial dysfunction, remains unresolved.
  • No direct molecular link between TRAPPC11 and dolichol/LLO synthesis enzymes
  • No structural model of TRAPPC11 within the TRAPP complex
  • Causal chain from trafficking defect to mitochondrial and autophagic phenotypes undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 1
Localization
GO:0005783 endoplasmic reticulum 3 GO:0005794 Golgi apparatus 2
Pathway
R-HSA-5653656 Vesicle-mediated transport 4 R-HSA-392499 Metabolism of proteins 2 R-HSA-9612973 Autophagy 1
Complex memberships
TRAPP complex

Evidence

Reading pass · 8 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2013 TRAPPC11 is a component of the multiprotein TRAPP complex; disease-causing mutations (p.Gly980Arg and p.Ala372_Ser429del) impair binding of TRAPPC11 to other TRAPP complex components and disrupt Golgi apparatus architecture. The p.Ala372_Ser429del deletion causes normal ER-to-Golgi trafficking but dramatically delayed exit from the Golgi to the cell surface, and results in alterations of lysosomal membrane glycoproteins LAMP1 and LAMP2. Co-immunoprecipitation to assess TRAPP complex binding; marker trafficking experiments in patient fibroblasts; immunofluorescence of Golgi and lysosomal markers American journal of human genetics High 23830518
2016 TRAPPC11 is required for lipid-linked oligosaccharide (LLO) biosynthesis and protein glycosylation; loss of trappc11 in zebrafish reduces LLO levels and triggers compensatory up-regulation of the terpenoid biosynthetic pathway (dolichol production). Depletion of TRAPPC11 (but not other TRAPP components) in human cells causes protein hypoglycosylation, and lipid droplets accumulate in patient fibroblasts. Inhibition of terpenoid or LLO synthesis phenocopies the stressed unfolded protein response (UPR) seen in trappc11 mutants. Zebrafish genetic mutant analysis; LLO quantification; qRT-PCR of terpenoid pathway genes; pharmacological inhibitors phenocopy; siRNA knockdown of individual TRAPP components in human cells; patient fibroblast analysis Molecular biology of the cell High 26912795
2016 A TRAPPC11 splice mutation (c.1893+3A>G) causes incomplete exon skipping, reduction in full-length TRAPPC11 protein, hypoglycosylation of LAMP1, and delays in both arrival of cargo at the Golgi and release from the Golgi to the plasma membrane in patient fibroblasts. Western blot; trafficking marker experiments in patient fibroblasts; immunofluorescence for LAMP1 glycosylation Journal of medical genetics Medium 27707803
2018 TRAPPC11 mutations are associated with hypoglycosylation of α-dystroglycan; compound heterozygous TRAPPC11 mutations in a patient confirm abnormal membrane trafficking in fibroblasts, establishing a link between a membrane trafficking protein and the dystroglycanopathy group of muscular dystrophies. Immunofluorescence and western blotting for α-dystroglycan glycosylation in muscle biopsy; live cell trafficking analysis in patient fibroblasts Skeletal muscle Medium 29855340
2019 The carboxy-terminal region of TRAPPC11 is critical for its functions: a frameshift extending the C-terminus (p.Asp1127Valfs*47) combined with a foie gras domain deletion causes defects in ER-to-Golgi transport, delayed Golgi exit, glycosylation defects of an ER-resident glycoprotein, and autophagic flux defects. Subjects with only the Gly980Arg missense variant showed trafficking and glycosylation defects but not autophagic flux defects, indicating domain-specific functional contributions. Trafficking marker assays in patient fibroblasts; glycosylation assays; autophagic flux assays (LC3-II accumulation with/without bafilomycin) Scientific reports Medium 31575891
2021 TRAPPC11 is important for TRAPP complex integrity and anterograde membrane transport from the ER to the ER-Golgi intermediate compartment; recessive mutations cause hypoglycosylation of α-dystroglycan in both skeletal muscle and brain (including Purkinje cells and dentate neurons), with neuropathology resembling N-linked congenital disorders of glycosylation. Membrane trafficking assays; immunofluorescence with IIH6 antibody for α-dystroglycan glycosylation in muscle biopsy and post-mortem brain; western blot Neuropathology and applied neurobiology Medium 34648194
2023 TRAPPC11 deficiency is associated with decreased mitochondrial ATP production capacity and alterations in mitochondrial network architecture, expanding TRAPPC11's functional role beyond membrane trafficking and glycosylation. Mitochondrial function assays (ATP production) and mitochondrial network imaging in patient-derived cells Journal of medical genetics Low 37197784
2024 Membrane trafficking assays in fibroblasts from a TRAPPC11 compound heterozygous patient show defective ER-to-Golgi transport and decreased expression of glycoproteins LAMP2 and ICAM-1, consistent with TRAPPC11-opathy being a congenital disorder of glycosylation (CDG). Membrane trafficking assays; western blot/immunofluorescence for LAMP2 and ICAM-1 in patient fibroblasts Molecular genetics and metabolism Low 38564972

Source papers

Stage 0 corpus · 21 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Specific interaction of Smn, the spinal muscular atrophy determining gene product, with hnRNP-R and gry-rbp/hnRNP-Q: a role for Smn in RNA processing in motor axons? Human molecular genetics 242 11773003
2013 Recessive TRAPPC11 mutations cause a disease spectrum of limb girdle muscular dystrophy and myopathy with movement disorder and intellectual disability. American journal of human genetics 89 23830518
2000 Identification of GRY-RBP as an apolipoprotein B RNA-binding protein that interacts with both apobec-1 and apobec-1 complementation factor to modulate C to U editing. The Journal of biological chemistry 85 11134005
2018 TRAPPC11 and GOSR2 mutations associate with hypoglycosylation of α-dystroglycan and muscular dystrophy. Skeletal muscle 48 29855340
2015 Congenital muscular dystrophy with fatty liver and infantile-onset cataract caused by TRAPPC11 mutations: broadening of the phenotype. Skeletal muscle 43 26322222
2016 A novel TRAPPC11 mutation in two Turkish families associated with cerebral atrophy, global retardation, scoliosis, achalasia and alacrima. Journal of medical genetics 40 27707803
2001 Two-hybrid cloning identifies an RNA-binding protein, GRY-RBP, as a component of apobec-1 editosome. Biochemical and biophysical research communications 35 11352648
2016 trappc11 is required for protein glycosylation in zebrafish and humans. Molecular biology of the cell 34 26912795
2017 Siblings With Mutations in TRAPPC11 Presenting With Limb-Girdle Muscular Dystrophy 2S. Journal of clinical neuromuscular disease 22 28827486
2021 TRAPPC11-related muscular dystrophy with hypoglycosylation of alpha-dystroglycan in skeletal muscle and brain. Neuropathology and applied neurobiology 18 34648194
2019 Characterization of three TRAPPC11 variants suggests a critical role for the extreme carboxy terminus of the protein. Scientific reports 14 31575891
2023 Expanding the phenotypic spectrum of TRAPPC11-related muscular dystrophy: 25 Roma individuals carrying a founder variant. Journal of medical genetics 9 37197784
2018 Novel TRAPPC11 Mutations in a Chinese Pedigree of Limb Girdle Muscular Dystrophy. Case reports in genetics 9 30105108
2024 TRAPPC11-CDG muscular dystrophy: Review of 54 cases including a novel patient. Molecular genetics and metabolism 8 38564972
2021 Digenic Variants in the TTN and TRAPPC11 Genes Co-segregating With a Limb-Girdle Muscular Dystrophy in a Han Chinese Family. Frontiers in neuroscience 8 33746696
2024 Screening and identification of Paenibacillus polymyxa GRY-11 and its biological control potential against apple replant disease. Folia microbiologica 7 39352682
2021 Whole-Exome Sequencing and hiPSC Cardiomyocyte Models Identify MYRIP, TRAPPC11, and SLC27A6 of Potential Importance to Left Ventricular Hypertrophy in an African Ancestry Population. Frontiers in genetics 6 33679876
2010 Expression of G-Ry derived from the potato (Solanum tuberosum L.) increases PVY(O) resistance. Journal of agricultural and food chemistry 4 20481626
2024 Large TRAPPC11 gene deletions as a cause of muscular dystrophy and their estimated genesis. Journal of medical genetics 1 38955476
2021 Corrigendum: Digenic Variants in the TTN and TRAPPC11 Genes Co-segregating With a Limb-Girdle Muscular Dystrophy in a Han Chinese Family. Frontiers in neuroscience 0 33967689
2020 Publisher Correction: Characterization of three TRAPPC11 variants suggests a critical role for the extreme carboxy terminus of the protein. Scientific reports 0 33173071

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