Affinage

TRAM2

Translocating chain-associated membrane protein 2 · UniProt Q15035

Length
370 aa
Mass
43.3 kDa
Annotated
2026-04-28
27 papers in source corpus 11 papers cited in narrative 11 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TRAM2 is an endoplasmic reticulum membrane protein that couples calcium homeostasis with protein translocation and collagen biosynthesis. Its C-terminal domain physically interacts with the ER Ca²⁺ pump SERCA2b, and this interaction is required for type I collagen triple-helix folding; disruption of TRAM2–SERCA2b coupling—by deletion mutagenesis or pharmacological SERCA inhibition—blocks collagen synthesis and mineralization in fibroblasts and osteoblasts (PMID:14749390, PMID:34047068). TRAM2 also functions as a ceramide-binding translocon component that controls regulated alternative translocation (RAT): in the absence of ceramide, TRAM2 directs the first transmembrane helix of TM4SF20 into the ER lumen, whereas ceramide binding renders translocation TRAM2-independent, inverting TM4SF20 topology and activating CREB3L1 cleavage (PMID:27499293, PMID:34793833). TRAM2 transcription is regulated by Runx2/BMP-2 in osteoblasts and by YAP/TEAD4 through a dedicated enhancer in cancer cells, linking its expression to both skeletal development and oncogenic signaling (PMID:17486635, PMID:33514403).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2004 High

    Establishing that TRAM2 is not merely a translocon accessory but a functional bridge between ER calcium handling and collagen biosynthesis resolved how the ER coordinates Ca²⁺ supply with cotranslational folding of collagen.

    Evidence Yeast two-hybrid, reciprocal co-IP, C-terminal deletion mutagenesis, and thapsigargin treatment in hepatic stellate cells and fibroblasts

    PMID:14749390

    Open questions at the time
    • Structural basis of the TRAM2–SERCA2b interface not resolved
    • Whether TRAM2 modulates SERCA2b enzymatic activity or merely tethers it to translocation sites was not distinguished
    • Generalizability to other ER-translocated substrates beyond type I collagen not tested
  2. 2007 Medium

    Identifying Tram2 as a direct Runx2 transcriptional target established how osteoblast differentiation programs upregulate the ER machinery needed for collagen production.

    Evidence ChIP display and chromatin immunoprecipitation for Runx2 occupancy at Tram2 locus; BMP-2-dependent mRNA induction across multiple osteoblastic cell lines

    PMID:17486635

    Open questions at the time
    • Reporter-based validation of the Runx2-responsive element was not performed
    • Whether Runx2 regulation of TRAM2 is sufficient to drive collagen output was not tested
  3. 2016 High

    Demonstrating that TRAM2 controls topology of TM4SF20 during ER insertion revealed a new translocon function—regulated alternative translocation (RAT)—where ceramide switches a substrate from TRAM2-dependent to TRAM2-independent insertion.

    Evidence Genetic knockout/knockdown of TRAM2, topology assays, and ceramide treatment showing TM4SF20 transmembrane helix inversion and downstream CREB3L1 cleavage

    PMID:27499293

    Open questions at the time
    • Whether TRAM2 directly contacts TM4SF20 during translocation or acts indirectly through translocon conformation was unresolved
    • Full repertoire of RAT substrates beyond TM4SF20 not defined
  4. 2021 High

    Showing that TRAM2 directly binds ceramide via photoactivatable probes provided the biochemical basis for how ceramide sensing at the translocon switches RAT substrate topology.

    Evidence Photoactivatable clickable ceramide crosslinking, competition by long-chain ceramides, and correlation with RAT functional readout

    PMID:34793833

    Open questions at the time
    • Ceramide-binding site on TRAM2 not mapped at residue level
    • Whether ceramide binding alters TRAM2 conformation or displaces it from the translocon is unknown
  5. 2021 Medium

    Confirming the TRAM2–SERCA2b axis in osteoblasts and linking it to biomineralization extended the collagen-folding mechanism to skeletal tissue physiology.

    Evidence Co-IP, siRNA silencing, calcium quantification, and mineralization assays in osteoblast cultures

    PMID:34047068

    Open questions at the time
    • In vivo skeletal phenotype of TRAM2 loss not characterized
    • Relative contribution of TRAM2-SERCA2b versus other ER calcium buffers to osteoblast collagen output not quantified
  6. 2021 Medium

    Identifying YAP/TEAD4 transcriptional control of TRAM2 through a specific enhancer, with FSTL-1 as a downstream secreted effector, connected TRAM2 to oncogenic signaling and explained its upregulation in aggressive cancers.

    Evidence Genome-wide YAP ChIP, CRISPR enhancer deletion, and functional proliferation/migration/invasion assays with FSTL-1 identification

    PMID:33514403

    Open questions at the time
    • Whether TRAM2's oncogenic role depends on its translocon/SERCA2b functions or a distinct mechanism is unclear
    • FSTL-1 dependence on TRAM2-mediated translocation versus general secretory capacity not distinguished

Open questions

Synthesis pass · forward-looking unresolved questions
  • The structural basis of TRAM2's dual functionality—ceramide sensing for RAT and SERCA2b coupling for collagen folding—and whether these represent independent or coordinated mechanisms at the translocon remain undefined.
  • No high-resolution structure of TRAM2 or its complexes exists
  • Complete substrate repertoire for RAT is unknown
  • In vivo genetic models (knockout mice) have not been reported for TRAM2

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 3 GO:0008289 lipid binding 1
Localization
GO:0005783 endoplasmic reticulum 4
Pathway
R-HSA-392499 Metabolism of proteins 4

Evidence

Reading pass · 11 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2004 TRAM2 interacts with the ER Ca2+ pump SERCA2b via its C-terminal domain, and this interaction is required for type I collagen biosynthesis in hepatic stellate cells and fibroblasts. The C-terminal domain of TRAM2 interacts with SERCA2b as shown by yeast two-hybrid and co-immunoprecipitation; TRAM2 also co-precipitates with anti-collagen antibody. Deletion of the C-terminal domain inhibits collagen synthesis, and pharmacological inhibition of SERCA2b (thapsigargin) phenocopies this, inhibiting collagen triple helix folding and increasing intracellular degradation. Yeast two-hybrid, co-immunoprecipitation, deletion mutagenesis, pharmacological inhibition (thapsigargin), in vitro collagen folding assay Molecular and cellular biology High 14749390
2016 TRAM2 controls regulated alternative translocation (RAT) of the transmembrane protein TM4SF20 by facilitating translocation of its first transmembrane helix into the ER lumen in the absence of ceramide. In the presence of ceramide, TM4SF20 translocation becomes TRAM2-independent, resulting in inversion of TM4SF20 membrane topology and stimulation of CREB3L1 cleavage. Genetic knockdown/knockout, topology assays, ceramide treatment, cell-based translocation assays Molecular cell High 27499293
2021 TRAM2 directly interacts with SERCA2b and modulates SERCA2b activity to couple calcium enrichment with collagen biosynthesis in osteoblasts, and TRAM2 silencing disrupts the calcium-collagen relationship and causes poor mineralization. Co-immunoprecipitation, siRNA silencing, biomineralization assays, calcium and collagen quantification Advanced science Medium 34047068
2021 TRAM2 and TRAM1 bind ceramide and its analogs, as identified by a photoactivatable and clickable short-chain ceramide probe (pac-C7-Cer). The ceramide-TRAM2 interaction is competed by naturally occurring long-chain ceramides, and binding of ceramide analogs to TRAM2 correlates with their ability to induce RAT of TM4SF20, providing mechanistic insight into ceramide sensing for regulated alternative translocation. Photoactivatable ceramide analog crosslinking, click chemistry, competition binding assay, RAT functional assay The Journal of biological chemistry High 34793833
2007 Tram2 is a direct transcriptional target of Runx2 in osteoblasts, as identified by ChIP display. BMP-2-induced Runx2 expression coincides with increased Tram2 mRNA levels in multiple osteoblastic cell lines, and Runx2 overexpression in non-osteoblasts suppresses Tram2, which is alleviated by BMP-2 treatment. ChIP display, chromatin immunoprecipitation, BMP-2 treatment, quantitative RT-PCR across multiple cell lines Journal of cellular biochemistry Medium 17486635
2021 TRAM2 is transcriptionally activated by YAP/TEAD4 through an enhancer element (EnhancerTRAM2), and TRAM2 mediates YAP-induced cell proliferation, migration, and invasion. FSTL-1 was identified as a major direct client/secreted factor downstream of TRAM2 involved in these oncogenic phenotypes. Genome-wide ChIP profiling of YAP, CRISPR-based enhancer deletion screen, functional cell proliferation/migration/invasion assays, identification of FSTL-1 as TRAM2 downstream target Genome biology Medium 33514403
2021 miR-432-5p from iPSC-MSC exosomes suppresses TRAM2, which is described as a vital modulator of collagen biosynthesis in corneal stromal stem cells, reducing ECM deposition and scar formation. miRNA overexpression/knockdown, mRNA expression analysis, in vivo corneal model, target gene validation Biomaterials Low 34923312
2018 TRAM2 knockdown in oral squamous cell carcinoma cells inhibits cell migration, invasiveness, and transendothelial migration, with significant decreases in PERK and matrix metalloproteinases (MT1-MMP, MMP2, MMP9), suggesting TRAM2 controls cancer cell metastasis via regulation of ER stress signaling and MMP expression. siRNA knockdown, migration/invasion assays, Western blotting for PERK and MMPs Journal of Cancer Low 30271493
2021 TRAM2 silencing in glioma cells suppresses proliferation, invasion, migration, and EMT in vitro and inhibits tumorigenicity in vivo; TRAM2 is positively associated with activation of the PI3K/AKT/mTOR signaling pathway, and PI3K activator 740Y-P reverses the effects of TRAM2 silencing. siRNA silencing, in vitro proliferation/invasion/migration assays, xenograft in vivo model, PI3K activator rescue experiment, Western blotting of pathway components Biochemical and biophysical research communications Low 34826698
2022 RBM15B, transcriptionally activated by YY1, regulates TRAM2 mRNA stability in an m6A-dependent manner in hepatocellular carcinoma cells, establishing a YY1-RBM15B-TRAM2 regulatory axis. Co-IP, luciferase reporter assay, m6A methylation assay, siRNA knockdown, mRNA stability assay Frontiers in oncology Low 35494016
2019 Silencing of TRAM2 in human cells significantly reduces intracellular Staphylococcus aureus bacterial load and restores host cell viability; pharmacological inhibition of SERCA (thapsigargin), the TRAM2 interacting partner, also halts intracellular MRSA survival, suggesting TRAM2-SERCA coupling is required for intracellular bacterial infection. shRNA screen, siRNA silencing, thapsigargin pharmacological inhibition, bacterial load quantification Scientific reports Low 31659191

Source papers

Stage 0 corpus · 27 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2021 Exosomes-loaded thermosensitive hydrogels for corneal epithelium and stroma regeneration. Biomaterials 195 34923312
2003 Identification of a novel adrenomedullin gene family in teleost fish. Biochemical and biophysical research communications 71 14623291
2004 TRAM2 protein interacts with endoplasmic reticulum Ca2+ pump Serca2b and is necessary for collagen type I synthesis. Molecular and cellular biology 67 14749390
2016 Inverting the Topology of a Transmembrane Protein by Regulating the Translocation of the First Transmembrane Helix. Molecular cell 37 27499293
2014 Aromatase inhibitor-associated bone fractures: a case-cohort GWAS and functional genomics. Molecular endocrinology (Baltimore, Md.) 37 25148458
2008 Preimplantation genetic diagnosis for autosomal recessive polycystic kidney disease. Reproductive biomedicine online 31 18252063
2022 YY1-Targeted RBM15B Promotes Hepatocellular Carcinoma Cell Proliferation and Sorafenib Resistance by Promoting TRAM2 Expression in an m6A-Dependent Manner. Frontiers in oncology 24 35494016
2021 Calcium-Collagen Coupling is Vital for Biomineralization Schedule. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 23 34047068
2018 Overexpression of Translocation Associated Membrane Protein 2 Leading to Cancer-Associated Matrix Metalloproteinase Activation as a Putative Metastatic Factor for Human Oral Cancer. Journal of Cancer 22 30271493
2018 Genome-wide scan for commons SNPs affecting bovine leukemia virus infection level in dairy cattle. BMC genomics 20 29439661
2021 A comprehensive enhancer screen identifies TRAM2 as a key and novel mediator of YAP oncogenesis. Genome biology 19 33514403
2007 Identification of novel Runx2 targets in osteoblasts: cell type-specific BMP-dependent regulation of Tram2. Journal of cellular biochemistry 18 17486635
2008 Three de novo losses and one insertion within a pericentric inversion of chromosome 6 in a patient with complete absence of expressive speech and reduced pain perception. European journal of medical genetics 17 19041736
2021 TRAM2 promotes the malignant progression of glioma through PI3K/AKT/mTOR pathway. Biochemical and biophysical research communications 16 34826698
2020 Anti-cyclic citrullinated peptide antibodies are associated with radiographic damage but not disease activity in early rheumatoid arthritis diagnosed in 2006-2011. Scandinavian journal of rheumatology 16 32856532
2023 Downregulation of circ-STK39 suppresses pancreatic cancer progression by sponging mir-140-3p and regulating TRAM2-mediated epithelial-mesenchymal transition. Apoptosis : an international journal on programmed cell death 12 37041422
2006 Dual control of quorum sensing by two TraM-type antiactivators in Agrobacterium tumefaciens octopine strain A6. Journal of bacteriology 12 16547030
2006 Mutation analyses of genes on 6p12-p11 in patients with juvenile myoclonic epilepsy. Neuroscience letters 11 16876319
2006 Crystal structure and mechanism of TraM2, a second quorum-sensing antiactivator of Agrobacterium tumefaciens strain A6. Journal of bacteriology 11 16997969
2021 Identification of TRAMs as sphingolipid-binding proteins using a photoactivatable and clickable short-chain ceramide analog. The Journal of biological chemistry 10 34793833
2019 Identification of novel targets for host-directed therapeutics against intracellular Staphylococcus aureus. Scientific reports 10 31659191
2021 A comparative study of libido in drakes: from phenotypes to molecules. Poultry science 9 34700098
2002 Identification and mutational analysis of candidate genes for juvenile myoclonic epilepsy on 6p11-p12: LRRC1, GCLC, KIAA0057 and CLIC5. Epilepsy research 9 12200217
2014 Identification and characterization of a second quorum-sensing system in Agrobacterium tumefaciens A6. Journal of bacteriology 8 24464459
2020 Genes regulating membrane-associated E-cadherin and proliferation in adenomatous polyposis coli mutant colon cancer cells: High content siRNA screen. PloS one 5 33057364
2021 Identification of Four Enhancer-Associated Genes as Risk Signature for Diffuse Glioma Patients. Journal of molecular neuroscience : MN 2 34462884
2026 Molecular Subtype Classification and Mechanistic Investigation Based on Ferroptosis-Related lncRNAs in Ovarian Cancer. Genetics research 0 41858239