Affinage

TNKS2

Poly [ADP-ribose] polymerase tankyrase-2 · UniProt Q9H2K2

Length
1166 aa
Mass
126.9 kDa
Annotated
2026-06-10
19 papers in source corpus 11 papers cited in narrative 11 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TNKS2 (tankyrase-2, PARP-5b) is a poly(ADP-ribose) polymerase of the tankyrase subfamily that recognizes substrates through ankyrin-repeat clusters (ARCs) and modifies them by PARsylation to control WNT/β-catenin signaling, telomere protein interactions, peroxisome biology, and DNA repair (PMID:11294570, PMID:38967608). It was first defined as a perinuclear PARP that binds the telomere protein TRF1, with enzymatic activity required for its overexpression-induced necrotic cell death (PMID:11454873). A dominant cellular output is regulation of β-catenin: TNKS2 (with the PARsylation-dependent E3 ligase RNF146) drives degradation of the destruction-complex scaffold AXIN1, and this axis couples peroxisome status to WNT activity via the peroxisomal membrane partner PEX14 (PMID:38967608). TNKS2 also engages substrate-recruitment partners through tankyrase-binding motifs, including SASH1 (via a motif containing S519), an interaction that supports stem-like properties in melanocytes (PMID:37808724), and it cooperates with PARP-16 to PARsylate VEGF in the secretory pathway, dampening VEGF activity (PMID:32472322). In a carcinogen-induced squamous carcinoma model, loss of TNKS2 abolishes 53BP1+ double-strand-break foci and shifts repair toward homologous recombination, establishing a required role in nonhomologous end joining during tumorigenesis (PMID:34710250). TNKS2 is functionally redundant with TNKS1 in sustaining WNT signaling, so selective TNKS2 inhibition suppresses WNT/β-catenin activity in tumors that have lost TNKS1, and structural studies of both the catalytic domain and the ARC4 peptide-binding site have enabled selective inhibitors that block this pathway [PMID:40093088, PMID:32435397, PMID:bio_10.1101_2025.03.31.646301].

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2001 Medium

    Established TNKS2 as a distinct PARP-family enzyme: it was cloned as a paralog of tankyrase with ankyrin-repeat, SAM, and PARP catalytic domains, and was shown to physically bind the telomere protein TRF1, defining a two-member tankyrase family with telomeric associations.

    Evidence Serological cDNA cloning, sequence/domain analysis, and chromosomal mapping; yeast two-hybrid and in vitro TRF1 binding with localization and PARP-inhibitor rescue of overexpression toxicity

    PMID:11294570 PMID:11454873

    Open questions at the time
    • Endogenous telomeric function not demonstrated
    • Physiological substrates beyond TRF1 binding not identified
    • Necrotic phenotype derives from overexpression, not loss of function
  2. 2016 Medium

    Placed TNKS2 in a regulatory hierarchy controlling β-catenin signaling in cancer, showing it acts downstream of miR-490-3p to promote proliferation and invasion.

    Evidence siRNA knockdown with miR-resistant TNKS2 rescue, 3′UTR luciferase reporter, β-catenin assays, and xenografts in triple-negative breast cancer cells

    PMID:27506313

    Open questions at the time
    • Direct enzymatic substrate in this context not defined
    • Redundancy with TNKS1 not addressed
    • Single tumor-type model
  3. 2020 Medium

    Defined a sequential ADP-ribosylation mechanism in the secretory pathway and the structural basis for selective catalytic inhibition.

    Evidence Biochemical ADP-ribosylation assays showing PARP-16 priming of VEGF for TNKS2 poly-ADP-ribosylation; X-ray crystallography of the TNKS2 catalytic domain with bis-quinazolinone inhibitors plus WNT reporter assays

    PMID:32435397 PMID:32472322

    Open questions at the time
    • In vivo relevance of VEGF PARsylation not shown
    • PARP-16/TNKS2 cooperation tested in single lab/method set
    • Inhibitor selectivity not validated against full PARP panel in vivo
  4. 2021 Medium

    Demonstrated a required role for TNKS2 in nonhomologous end joining during tumorigenesis, with its loss driving a switch toward homologous recombination repair.

    Evidence PARP5B-null carcinogen-induced squamous carcinoma mouse model, 53BP1/ATM immunofluorescence, co-IP of an HR repair complex, and XAV939+etoposide treatment

    PMID:34710250

    Open questions at the time
    • Direct DSB substrate of TNKS2 PARsylation not identified
    • Mechanism linking TNKS2 to 53BP1 foci formation unresolved
    • Single model system
  5. 2024 Medium

    Connected TNKS2 PARsylation to peroxisome biology and AXIN1-mediated WNT control, and identified SASH1 as a tankyrase-motif partner relevant to stem-like phenotypes.

    Evidence Genome-wide CRISPRi screen with epistasis, PEX14 binding and AXIN1 degradation assays, β-catenin reporters; Co-IP and NMR binding kinetics of SASH1 S519 motif with functional melanocyte assays (preprint)

    PMID:37808724 PMID:38967608

    Open questions at the time
    • Direct peroxisomal PARsylation substrates not enumerated
    • SASH1 interaction from single lab and preprint
    • Relative TNKS1 vs TNKS2 contribution at peroxisomes not partitioned
  6. 2025 Medium

    Validated TNKS2 as a tumor-selective WNT target and expanded druggable sites beyond the catalytic pocket to the ARC4 substrate-binding domain.

    Evidence Structure-guided TNKS2-selective catalytic inhibitor tested in TNKS1-deficient (chr8p-loss) cell/organoid models; ARC4-targeting compound ARCher-142/S8 confirmed by FRET screen, NMR, and X-ray, with WNT reporter readouts (preprints)

    PMID:40093088 PMID:bio_10.1101_2025.03.31.646301

    Open questions at the time
    • In vivo efficacy and on-target selectivity not established in the corpus
    • Preprint status
    • Whether ARC4 inhibition phenocopies catalytic inhibition broadly unresolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • The full set of physiological TNKS2 PARsylation substrates and the determinants of TNKS1/TNKS2 functional division of labor across telomeres, peroxisomes, DNA repair, and WNT signaling remain undefined.
  • No comprehensive substrate map
  • Endogenous telomeric role not resolved in the corpus
  • Tissue-specific non-redundant TNKS2 functions unclear

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016740 transferase activity 2 GO:0140096 catalytic activity, acting on a protein 2 GO:0016787 hydrolase activity 1
Localization
GO:0005777 peroxisome 1 GO:0005794 Golgi apparatus 1
Pathway
R-HSA-162582 Signal Transduction 2 R-HSA-73894 DNA Repair 1

Evidence

Reading pass · 11 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2001 TNKS2 (TANK2) is a poly(ADP-ribose) polymerase that interacts with the telomere-binding protein TRF1 in yeast two-hybrid and in vitro assays, localizes predominantly to a perinuclear region, and causes rapid cell death by necrosis (loss of mitochondrial membrane potential, no PARP1 cleavage) when highly overexpressed; cell death is prevented by the PARP inhibitor 3-aminobenzamide. Yeast two-hybrid, in vitro binding, overexpression, subcellular localization, PARP inhibitor rescue The Journal of biological chemistry Medium 11454873
2001 TNKS2 (TNKL) encodes an ankyrin repeat-, sterile alpha-motif (SAM)-, and PARP catalytic domain-containing protein with 78% identity to tankyrase (TNKS1), mapping to chromosome 10, establishing a two-member tankyrase gene family. Serological cDNA library screening, sequence analysis, chromosomal mapping Genes and immunity Medium 11294570
2016 TNKS2 knockdown in triple-negative breast cancer cells phenocopies miR-490-3p overexpression (inhibiting proliferation and invasion), and overexpression of a miR-490-3p-resistant TNKS2 rescues these effects, placing TNKS2 downstream of miR-490-3p in the regulation of β-catenin signaling. siRNA knockdown, rescue with resistant TNKS2, 3′UTR luciferase reporter, β-catenin signaling assays, xenograft Gene Medium 27506313
2020 TNKS2 (Golgi-associated) cooperates with ER-associated PARP-16 to poly-ADP-ribosylate VEGF in the secretory pathway: PARP-16 catalyzes priming mono-ADP-ribosylation of VEGF, which is a prerequisite for subsequent poly-ADP-ribosylation by TNKS-2, thereby reducing VEGF biological activity. Biochemical ADP-ribosylation assay, subcellular fractionation, interplay between PARP-16 and TNKS-2 Molecular and cellular biochemistry Medium 32472322
2021 Loss of PARP5B (TNKS2) in a carcinogen-induced squamous cell carcinoma model results in ATR activation, depletion of cancer stem cell fraction, absence of 53BP1+ double-strand break foci, ATM activation, and p53 induction; PARP5B-null tumor cells form a multiprotein complex (PML, pRPA, Rad50, Rad51, XRCC1, PCNA, Mcm2) indicating a shift to homologous recombination-mediated repair, establishing a required role for TNKS2 in nonhomologous end joining during tumorigenesis. PARP5B null mouse model, immunofluorescence for 53BP1/ATM, co-immunoprecipitation of repair complex, pharmacological inhibition (XAV939 + etoposide) Molecular carcinogenesis Medium 34710250
2024 TNKS2 binds the peroxisomal membrane protein PEX14 and, together with RNF146 (an E3 ligase activated by poly(ADP-ribose)), regulates peroxisome protein import efficiency via PARsylation of proteins at the peroxisome membrane; loss of peroxisomes increases TNKS2/RNF146-dependent degradation of AXIN1, thereby activating β-catenin transcription and linking peroxisome function to Wnt signaling. Genome-wide CRISPRi screen, genetic epistasis (TNKS/TNKS2 knockdown rescuing RNF146-loss phenotype), PEX14 binding, AXIN1 degradation assay, β-catenin reporter The Journal of cell biology High 38967608
2023 SASH1 physically binds TNKS2 through a bona fide tankyrase-binding motif (containing S519); the S519N disease variant alters SASH1-TNKS2 binding kinetics and affinity, and this interaction is required for SASH1's promotion of stem-like characteristics in human melanocytes. Co-immunoprecipitation, NMR binding kinetics, cell-based stem-cell assays, variant functional rescue bioRxivpreprint Medium 37808724
2025 Selective inhibition of TNKS2 (in cells with chromosome 8p loss that depletes TNKS1) is sufficient to suppress WNT/β-catenin signaling, demonstrating that TNKS2 alone can sustain WNT pathway activity when TNKS1 is absent; a structure-guided first-in-class TNKS2-selective inhibitor achieves this tumor-selective WNT suppression. Structure-guided drug design, TNKS1-deficient cell and organoid models, WNT reporter assays, genetic dependency analysis bioRxivpreprint Medium 40093088
2020 X-ray crystal structure of the TNKS2 PARP catalytic domain in complex with inhibitor MC2050-derived bis-quinazolinone compounds identified a nicotinamide-binding pocket with structural differences from PARP1/2 that enable picomolar selectivity; the structure-based inhibitor suppresses WNT/β-catenin signaling in colorectal cancer cells. X-ray crystallography, structure-based drug design, antiproliferative cell assay, WNT pathway reporter ACS medicinal chemistry letters Medium 32435397
2024 X-ray crystallography of TNKS2 catalytic domain with quinazolin-4-one derivatives revealed that nitro- and diol-substituents at C-8 engage a subsite between a mobile active-site loop and the canonical nicotinamide binding site of TNKS2, improving affinity (IC50 as low as 14 nM) and selectivity, and attenuating Wnt/β-catenin signaling in cells. X-ray crystallography, enzyme inhibition assays, WNT/β-catenin cell reporter assay bioRxivpreprint Medium bio_10.1101_2024.06.23.600314
2025 A small molecule (ARCher-142/S8) was identified that binds selectively to the ARC4 peptide-binding domain of TNKS2 (8 µM potency), competing with substrate peptide and engaging a unique hydrophobic sub-pocket; binding was confirmed by NMR and X-ray crystallography, and the compound attenuates WNT/β-catenin signaling in cells despite not targeting the catalytic domain. FRET-based high-throughput screen, NMR, X-ray crystallography, WNT/β-catenin cell reporter assay bioRxivpreprint Medium bio_10.1101_2025.03.31.646301

Source papers

Stage 0 corpus · 19 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2001 TANK2, a new TRF1-associated poly(ADP-ribose) polymerase, causes rapid induction of cell death upon overexpression. The Journal of biological chemistry 191 11454873
2012 miR-20a promotes migration and invasion by regulating TNKS2 in human cervical cancer cells. FEBS letters 99 22449978
2016 miR-490-3p inhibits the growth and invasiveness in triple-negative breast cancer by repressing the expression of TNKS2. Gene 43 27506313
2001 Cloning and characterization of TNKL, a member of tankyrase gene family. Genes and immunity 34 11294570
2021 Down-regulation of hsa_circ_0045474 induces macrophage autophagy in tuberculosis via miR-582-5p/TNKS2 axis. Innate immunity 22 34861798
2014 Molecular insights on TNKS1/TNKS2 and inhibitor-IWR1 interactions. Molecular bioSystems 16 24291818
2022 Icariin attenuates the tumor growth by targeting miR-1-3p/TNKS2/Wnt/β-catenin signaling axis in ovarian cancer. Frontiers in oncology 15 36185280
2020 From PARP1 to TNKS2 Inhibition: A Structure-Based Approach. ACS medicinal chemistry letters 13 32435397
2021 Association of relative leukocyte telomere length and genetic variants in telomere-related genes (TERT, TERT-CLPTM1, TRF1, TNKS2, TRF2) with atrophic age-related macular degeneration. Ophthalmic genetics 10 33565341
2020 Association of Relative Leucocyte Telomere Length and Gene Single Nucleotide Polymorphisms (TERT, TRF1, TNKS2) in Laryngeal Squamous Cell Carcinoma. Cancer genomics & proteomics 10 32576588
2021 MicroRNA-490-3p inhibits migration and chemoresistance of colorectal cancer cells via targeting TNKS2. World journal of surgical oncology 9 33849554
2021 miR-582-5p inhibits migration and chemo-resistant capabilities of colorectal cancer cells by targeting TNKS2. Genes & genomics 8 34357507
2015 Tankyrase 2 (TNKS2) polymorphism associated with risk in developing non-small cell lung cancer in a Chinese population. Pathology, research and practice 6 26293798
2024 A genome-wide screen links peroxisome regulation with Wnt signaling through RNF146 and TNKS/2. The Journal of cell biology 5 38967608
2024 Therapeutic Path to Triple Knockout: Investigating the Pan-inhibitory Mechanisms of AKT, CDK9, and TNKS2 by a Novel 2-phenylquinazolinone Derivative in Cancer Therapy- An In-silico Investigation Therapy. Current pharmaceutical biotechnology 4 37581526
2021 PARP5B is required for nonhomologous end joining during tumorigenesis in vivo. Molecular carcinogenesis 3 34710250
2020 Regulation of poly ADP-ribosylation of VEGF by an interplay between PARP-16 and TNKS-2. Molecular and cellular biochemistry 3 32472322
2023 SASH1 interacts with TNKS2 and promotes human melanocyte stem cell maintenance. bioRxiv : the preprint server for biology 2 37808724
2025 A potent and selective TNKS2 inhibitor for tumor-selective WNT suppression. bioRxiv : the preprint server for biology 0 40093088

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