Affinage

TAF8

Transcription initiation factor TFIID subunit 8 · UniProt Q7Z7C8

Length
310 aa
Mass
34.3 kDa
Annotated
2026-06-10
98 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TAF8 (TAF(II)43/TBN) is an integral subunit of the general transcription factor TFIID that contributes to RNA polymerase II transcriptional regulation during cellular differentiation and pluripotent cell survival (PMID:11076765, PMID:14580349). Its histone fold domain mediates incorporation into TFIID, and an isolated HFD acts as a dominant-negative that disrupts TFIID-dependent transcription (PMID:14580349). During adipogenic differentiation of 3T3-L1 preadipocytes, TAF8 is dramatically induced and sequestered into TFIID while other TAF levels decline, and full-length TAF8 functions as a positive regulator of adipogenesis, rescuing HFD-mediated inhibition (PMID:14580349). In early mouse embryos, TAF8 is selectively required for survival of pluripotent inner cell mass cells: loss of TAF8 permits blastocyst formation but triggers caspase-3-dependent apoptosis of the ICM while trophoblast cells remain viable (PMID:11076765). The TAF8 gene is single-copy and ubiquitously expressed at low levels comparable to TBP, consistent with a constitutive TFIID role (PMID:9569032). Beyond its membership in TFIID and these differentiation/survival phenotypes, the precise molecular contacts and target genes of TAF8 are not detailed in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 1998 Medium

    Established the genomic and expression baseline for human TAF(II)43, framing it as a constitutive component of the transcription machinery.

    Evidence FISH/somatic cell hybrid mapping and Northern blot of the human TAF(II)43 gene

    PMID:9569032

    Open questions at the time
    • Does not establish protein function or complex membership
    • No evidence of regulated expression in specific cell types
  2. 2000 High

    Resolved whether TAF8 has a selective biological requirement, showing it is essential specifically for survival of pluripotent inner cell mass cells rather than for all cell types.

    Evidence Mouse Tbn gene knockout with TUNEL, caspase-3 immunostaining, and in vitro ICM culture

    PMID:11076765

    Open questions at the time
    • Molecular basis of ICM-selective apoptosis not defined
    • Target genes whose dysregulation drives apoptosis unknown
    • Does not connect the survival role to TFIID composition
  3. 2001 Low

    Began placing TAF8 within the TFIID subunit interaction network by detecting a contact with TAF(II)135.

    Evidence Far Western blot detecting weak hTAF(II)135–hTAF(II)43 interaction

    PMID:11564872

    Open questions at the time
    • Single far-Western method without reciprocal confirmation
    • Interaction reported as weak with unclear functional significance
    • No structural mapping of the contact
  4. 2003 High

    Demonstrated that TAF8 is an inducible, regulatory TFIID subunit acting through its histone fold domain to drive a specific differentiation program (adipogenesis).

    Evidence Western blot of induction during 3T3-L1 adipogenesis, Co-IP for TFIID membership, dominant-negative HFD overexpression, and rescue experiments

    PMID:14580349

    Open questions at the time
    • Direct transcriptional targets during adipogenesis not identified
    • Mechanism of selective TAF8 induction not resolved
    • HFD interaction partners within TFIID not mapped structurally
  5. 2008 Low

    Linked TAF8 expression to extrinsic growth factor signaling in human preimplantation embryos, indicating regulated rather than purely constitutive expression in this context.

    Evidence RT-PCR of single human embryos cultured with LIF and defined growth factors

    PMID:18411410

    Open questions at the time
    • Small sample size (n=9)
    • Mechanism of LIF-mediated suppression unknown
    • No functional consequence of expression change demonstrated

Open questions

Synthesis pass · forward-looking unresolved questions
  • How TAF8 incorporation into TFIID directs cell-type-specific transcriptional programs and selectively protects pluripotent cells from apoptosis remains unresolved.
  • No direct TAF8 target genes identified in any system
  • Mechanistic link between TFIID composition and ICM survival missing
  • Structural basis of TAF8 contacts within TFIID undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140110 transcription regulator activity 2
Localization
GO:0005634 nucleus 1
Pathway
R-HSA-1266738 Developmental Biology 2 R-HSA-74160 Gene expression (Transcription) 2
Partners
Complex memberships
TFIID

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2000 The mouse Tbn gene (ortholog of human TAF8) is essential for survival of inner cell mass (ICM) cells in early embryos. Tbn mutant embryos develop to blastocyst stage but ICM cells undergo apoptosis (caspase-3-dependent, TUNEL-positive) by E4.0 while trophoblast cells remain viable, demonstrating a selective requirement for TBN in pluripotent cell survival. Gene knockout (homologous recombination), TUNEL assay, caspase-3 immunostaining, in vitro ICM culture Development (Cambridge, England) High 11076765
2003 Human TAF8 (TAF(II)43) is an integral subunit of functional TFIID and is the ortholog of mouse TBN. TAF8 is dramatically induced and sequestered within TFIID upon differentiation of 3T3-L1 preadipocytes to adipocytes, while other TAF levels slightly decrease. Ectopic expression of the TAF8 histone fold domain (HFD) acts as a dominant-negative and selectively inhibits adipogenic differentiation, whereas full-length TAF8 acts as a positive regulator of adipogenesis and rescues HFD-mediated inhibition. Western blot (induction during adipogenesis), dominant-negative overexpression of HFD, 3T3-L1 differentiation assay, co-immunoprecipitation (TFIID complex membership) Molecular cell High 14580349
2001 hTAF(II)135 interacts weakly with hTAF(II)43 (TAF8) as detected by far Western blot, placing TAF8 within the network of TFIID subunit interactions involved in TFIID assembly and transcriptional regulation. Far Western blot (protein-protein interaction) Molecular and cellular biology Low 11564872
1998 The human TAF(II)43 gene maps to chromosome 6p21, is present as a single copy in the genome, and its transcript is expressed ubiquitously at low levels similar to TBP, consistent with a constitutive role as a TFIID subunit. Genomic mapping (FISH/somatic cell hybrids), Northern blot Oncogene Medium 9569032
2008 TBN (TAF8) mRNA expression in human preimplantation embryos is regulated by growth factors: when embryos are cultured with LIF, only 2 out of 9 blastocysts expressed TBN, indicating that LIF suppresses TAF8 expression in human blastocysts. RT-PCR of single human embryos cultured with defined growth factors Reproduction (Cambridge, England) Low 18411410

Source papers

Stage 0 corpus · 98 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2010 A genome-wide search for signals of high-altitude adaptation in Tibetans. Molecular biology and evolution 248 20961960
2017 Structural covariance networks are coupled to expression of genes enriched in supragranular layers of the human cortex. NeuroImage 152 29274746
2004 Protein malnutrition and hypoalbuminemia as predictors of vascular events and mortality in ESRD. American journal of kidney diseases : the official journal of the National Kidney Foundation 133 14712428
2002 Significance of transthyretin in protein metabolism. Clinical chemistry and laboratory medicine 90 12553432
2012 Skeletal muscle mass is associated with bone geometry and microstructure and serum insulin-like growth factor binding protein-2 levels in adult women and men. Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research 83 22623219
2017 Tetramethylpyrazine nitrone activates the BDNF/Akt/CREB pathway to promote post-ischaemic neuroregeneration and recovery of neurological functions in rats. British journal of pharmacology 79 29161771
2016 Joint-linkage mapping and GWAS reveal extensive genetic loci that regulate male inflorescence size in maize. Plant biotechnology journal 78 26801971
2006 Dried plum prevents bone loss in a male osteoporosis model via IGF-I and the RANK pathway. Bone 73 16890505
2001 Effects of ascites resolution after successful TIPS on nutrition in cirrhotic patients with refractory ascites. The American journal of gastroenterology 71 11513188
1990 Total-body nitrogen by neutron activation in maintenance dialysis. American journal of kidney diseases : the official journal of the National Kidney Foundation 70 2368704
2008 Antioxidative and thrombolytic TMP nitrone for treatment of ischemic stroke. Bioorganic & medicinal chemistry 68 18790647
2012 Bovine lactoferrin improves bone mass and microstructure in ovariectomized rats via OPG/RANKL/RANK pathway. Acta pharmacologica Sinica 65 22902986
2008 Expression of genes involved in early cell fate decisions in human embryos and their regulation by growth factors. Reproduction (Cambridge, England) 64 18411410
2000 Taube nuss is a novel gene essential for the survival of pluripotent cells of early mouse embryos. Development (Cambridge, England) 61 11076765
1983 Indexes of body cell mass: nitrogen versus potassium. The American journal of physiology 55 6829756
2001 Positive and negative TAF(II) functions that suggest a dynamic TFIID structure and elicit synergy with traps in activator-induced transcription. Molecular and cellular biology 54 11564872
2002 Body composition in adolescents with anorexia nervosa. The American journal of clinical nutrition 52 11756057
2012 Therapeutic effects of tetramethylpyrazine nitrone in rat ischemic stroke models. Journal of neuroscience research 48 22431378
2020 Tetramethylpyrazine nitrone improves motor dysfunction and pathological manifestations by activating the PGC-1α/Nrf2/HO-1 pathway in ALS mice. Neuropharmacology 47 33152451
2017 Neuroprotective and axonal outgrowth-promoting effects of tetramethylpyrazine nitrone in chronic cerebral hypoperfusion rats and primary hippocampal neurons exposed to hypoxia. Neuropharmacology 47 28342896
2021 Prevalence and factors associated with SARS-CoV-2 seropositivity in the Spanish HIV Research Network Cohort. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 43 34186209
2007 Soy isoflavones avert chronic inflammation-induced bone loss and vascular disease. Journal of inflammation (London, England) 38 17825101
1994 Protein repletion and treatment in anorexia nervosa. The American journal of clinical nutrition 38 8279411
2023 Targeted therapy with nanatinostat and valganciclovir in recurrent EBV-positive lymphoid malignancies: a phase 1b/2 study. Blood advances 37 37530631
2018 Neuroprotective Effect and Mechanism of Action of Tetramethylpyrazine Nitrone for Ischemic Stroke Therapy. Neuromolecular medicine 36 29411248
2016 Tetramethylpyrazine nitrone, a multifunctional neuroprotective agent for ischemic stroke therapy. Scientific reports 36 27841332
2019 Effects of Aspirin on Growth Factor Release From Freshly Isolated Leukocyte-Rich Platelet-Rich Plasma in Healthy Men: A Prospective Fixed-Sequence Controlled Laboratory Study. The American journal of sports medicine 35 30888847
2014 Involvement of telomerase reverse transcriptase in heterochromatin maintenance. Molecular and cellular biology 35 24550003
2003 The TBN protein, which is essential for early embryonic mouse development, is an inducible TAFII implicated in adipogenesis. Molecular cell 33 14580349
2016 Triple Block Nanocarrier Platform for Synergistic Cancer Therapy of Antagonistic Drugs. Biomacromolecules 32 27936725
2013 In vitro evaluation on neutral detergent fiber and cellulose digestion by post-ruminal microorganisms in goats. Journal of the science of food and agriculture 32 24254250
2016 Tetramethylpyrazine Nitrone Improves Neurobehavioral Functions and Confers Neuroprotection on Rats with Traumatic Brain Injury. Neurochemical research 31 27452038
1988 One-year follow-up of weight, total body potassium, and total body nitrogen in obese adolescents treated with the protein-sparing modified fast. The American journal of clinical nutrition 31 3389334
2014 Partial loss of Smad7 function impairs bone remodeling, osteogenesis and enhances osteoclastogenesis in mice. Bone 29 24998669
2016 Targeted nanoconjugate co-delivering siRNA and tyrosine kinase inhibitor to KRAS mutant NSCLC dissociates GAB1-SHP2 post oncogene knockdown. Scientific reports 27 27530552
1996 Body protein in prepubertal children with phenylketonuria. European journal of clinical nutrition 27 8654332
2019 Tetramethylpyrazine Nitrone Reduces Oxidative Stress to Alleviate Cerebral Vasospasm in Experimental Subarachnoid Hemorrhage Models. Neuromolecular medicine 23 31134485
2017 Tetramethylpyrazine nitrone protects retinal ganglion cells against N-methyl-d-aspartate-induced excitotoxicity. Journal of neurochemistry 22 28160291
2012 Novel multi-functional nitrones for treatment of ischemic stroke. Bioorganic & medicinal chemistry 22 22579617
2011 Poor trabecular microarchitecture in male current smokers: the cross-sectional STRAMBO study. Calcified tissue international 22 21800164
1998 Relationship of body water compartments to age, race, and fat-free mass. The Journal of laboratory and clinical medicine 22 9851738
2021 TBN improves motor function and prolongs survival in a TDP-43M337V mouse model of ALS. Human molecular genetics 21 33929499
1998 Genomics and transcription analysis of human TFIID. Oncogene 21 9569032
1986 Effects of peritoneovenous shunting on body composition. Gastroenterology 21 3940239
1982 Changes in body protein, body potassium, and lean body mass during total parenteral nutrition. JPEN. Journal of parenteral and enteral nutrition 21 6808168
2023 Tetramethylpyrazine nitrone exerts neuroprotection via activation of PGC-1α/Nrf2 pathway in Parkinson's disease models. Journal of advanced research 20 37989471
2018 Discovery and characterization of the tubercidin biosynthetic pathway from Streptomyces tubercidicus NBRC 13090. Microbial cell factories 20 30153835
2017 Deficiency of DGCR8 increases bone formation through downregulation of miR-22 expression. Bone 19 28739418
1996 Aging in women--the four-compartment model of body composition. Metabolism: clinical and experimental 19 8544776
2020 Telomerase Biology Associations Offer Keys to Cancer and Aging Therapeutics. Current aging science 18 31544708
2010 Mild hyperoxia limits hTR levels, telomerase activity, and telomere length maintenance in hTERT-transduced bone marrow endothelial cells. Biochimica et biophysica acta 18 20619302
2024 Visible-Light-Promoted α-C(sp3)-H Amination of Ethers with Azoles and Amides. Organic letters 17 38241172
2023 Evaluation of therapeutic effects of tetramethylpyrazine nitrone in Alzheimer's disease mouse model and proteomics analysis. Frontiers in pharmacology 17 36950017
2000 Total body protein in chronic diseases and in aging. Annals of the New York Academy of Sciences 16 10865769
1994 Total body nitrogen in children with chronic renal failure and short stature. European journal of clinical nutrition 16 7925226
2015 A proteomic analysis of seeds from Bt-transgenic Brassica napus and hybrids with wild B. juncea. Scientific reports 15 26486652
2021 QDtbn1 , an F-box gene affecting maize tassel branch number by a dominant model. Plant biotechnology journal 14 33382512
1994 Total body nitrogen as a predictor of clinical status in anorexia nervosa. The International journal of eating disorders 14 8199608
1993 In vivo animal models of body composition in aging. The Journal of nutrition 14 8429404
2015 Cysteine induces longitudinal bone growth in mice by upregulating IGF-I. International journal of molecular medicine 13 26101100
2007 Total body protein in healthy adolescent girls: validation of estimates derived from simpler measures with neutron activation analysis. The American journal of clinical nutrition 12 17209179
2024 Tetramethylpyrazine Nitrone alleviates D-galactose-induced murine skeletal muscle aging and motor deficits by activating the AMPK signaling pathway. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 11 38479182
2020 Establishment and characterization of a cold-sensitive neural cell line from the brain of tilapia (Oreochromis niloticus). Journal of fish biology 11 33258111
2019 Thromboxane-prostaglandin receptor antagonist, terutroban, prevents neurovascular events after subarachnoid haemorrhage: a nanoSPECT study in rats. Critical care (London, England) 11 30744667
2017 Effects of pulsed electromagnetic fields on histomorphometry and osteocalcin in disuse osteoporosis rats. Technology and health care : official journal of the European Society for Engineering and Medicine 11 28582887
2024 Identification of Microorganism in Infected Wounds by Positively Charged Selective Sensor Array and Deep Learning Algorithm. Analytical chemistry 10 38702857
2006 Body composition during GH replacement in adults - methodological variations with respect to gender. European journal of endocrinology 9 16556717
2024 Tetramethylpyrazine nitrone delays the aging process of C. elegans by improving mitochondrial function through the AMPK/mTORC1 signaling pathway. Biochemical and biophysical research communications 7 38850811
2024 Tetramethylpyrazine Nitrone (TBN) Reduces Amyloid β Deposition in Alzheimer's Disease Models by Modulating APP Expression, BACE1 Activity, and Autophagy Pathways. Pharmaceuticals (Basel, Switzerland) 7 39204110
2022 Genetic Variation in ZmPAT7 Contributes to Tassel Branch Number in Maize. International journal of molecular sciences 7 35269730
2020 Phase I safety, tolerability, and pharmacokinetic studies of tetramethylpyrazine nitrone in healthy Chinese volunteers. Drug development research 7 32864754
2023 ZmELF3.1 integrates the RA2-TSH4 module to repress maize tassel branching. The New phytologist 6 37858961
2022 Tetramethylpyrazine nitrone activates hypoxia-inducible factor and regulates iron homeostasis to improve renal anemia. Frontiers in pharmacology 6 36324690
2023 Genome-wide analysis of R2R3-MYB genes in cultivated peanut (Arachis hypogaea L.): Gene duplications, functional conservation, and diversification. Frontiers in plant science 5 36866371
2022 Tetramethylpyrazine nitrone TBN extends the lifespan of C. elegans by activating the Nrf2/SKN-1 signaling pathway. Biochemical and biophysical research communications 5 35576681
2010 Total body nitrogen and total body carbon as indicators of body protein and body lipids in the melon fly Bactrocera cucurbitae: effects of methoprene, a juvenile hormone analogue, and of diet supplementation with hydrolyzed yeast. Journal of insect physiology 5 20688076
2025 A long term bone and renal safety of TAF treatment on renal transplant recipients. Biomedical journal 4 39956376
2024 Tetramethylpyrazine Nitrone Promotes the Clearance of Alpha-Synuclein via Nrf2-Mediated Ubiquitin-Proteasome System Activation. Neuromolecular medicine 4 38568291
2023 Acute hypoxia attenuates resistance exercise-induced ribosome signaling but does not impact satellite cell pool expansion in human skeletal muscle. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 4 36786723
2020 A Novel Peptide, CK2.3, Improved Bone Formation in Ovariectomized Sprague Dawley Rats. International journal of molecular sciences 4 32664215
2014 Suppression of IL-2 production and proliferation of CD4(+) T cells by tuberostemonine O. Chemistry & biodiversity 4 25491339
2000 Leydig cell hyperplasia and the maintenance of bone volume: bone histomorphometry and testicular histopathology in 29 male leprosy autopsy cases. International journal of leprosy and other mycobacterial diseases : official organ of the International Leprosy Association 4 11221087
2025 tBN-CSDI: a time-varying blue noise-based diffusion model for time-series imputation. Bioinformatics advances 3 41127882
2023 Identification of QTLs and their candidate genes for the number of maize tassel branches in F2 from two higher generation sister lines using QTL mapping and RNA-seq analysis. Frontiers in plant science 3 37641589
1998 High level accumulation of an aberrantly spliced human DHFR RNA species. Molecules and cells 3 9638651
2026 Photocatalyst-free access to α-arylethanone oximes enabled by sequential HAT/SET of aryl iodides with TBN and alkenes. Chemical communications (Cambridge, England) 1 41493369
2025 Synthesis and Preclinical Evaluation of a Novel Oxy133-Infused Biomimetic Bone Graft Using a Rat Model of Posterolateral Spinal Fusion. World neurosurgery 1 39653079
2025 Mycobacterium vaccae ATCC 15483T administered to nulliparous C57BL/6N mice prior to mating protects their male offspring against the negative consequences of prenatal stress. Brain, behavior, and immunity 1 41197682
2024 Seasonality and Activity of Arbuscular Mycorrhizal Fungi in the Rhizosphere of Endemic Tree Species. Journal of basic microbiology 1 39034503
2023 Biocompatibility and Osseointegration of the Biomimetically Coated and Water-Soluble Eggshell Membrane Protein Cross-Linked Ti Alloy Screws. Iranian biomedical journal 1 38477251
2020 Fine mapping and candidate gene prediction of a major quantitative trait locus for tassel branch number in maize. Gene 1 32622989
2011 S-nitrosocaptopril formation in aqueous acid and basic medium. A vasodilator and angiotensin converting enzyme inhibitor. Organic & biomolecular chemistry 1 21860877
2026 METTL16 Modulates GPX4 Expression to Regulate Chondrocyte Ferroptosis. Frontiers in bioscience (Landmark edition) 0 41761981
2026 QTL mapping, validation, and candidate gene predicting for maize plant architecture traits via bulked segregant analysis plus linkage analysis with F₂ population. BMC plant biology 0 41981466
2025 Pharmacochemical Studies of Synthesized Coumarin-Isoxazole-Pyridine Hybrids. Molecules (Basel, Switzerland) 0 40286200
2025 Photoelectrochemical Catalyzed Site-Selective Tryptophan β-Position Functionalization. Journal of the American Chemical Society 0 41058170
2025 Tetramethylpyrazine nitrone: a multifaceted neuroprotective agent in neurodegenerative disorders. Neurodegenerative disease management 0 41345047
2024 Paraburkholderia tropica Primes a Multilayered Transcriptional Defense Response to the Nematode Meloidogyne spp. in Tomato. International journal of molecular sciences 0 39684296

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