Affinage

SYT10

Synaptotagmin-10 · UniProt Q6XYQ8

Round 2 corrected
Length
523 aa
Mass
59.1 kDa
Annotated
2026-04-28
26 papers in source corpus 7 papers cited in narrative 7 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SYT10 is a Ca²⁺-sensing synaptotagmin that drives activity-dependent exocytosis of dense-core vesicles, particularly IGF-1-containing somatodendritic vesicles in olfactory bulb neurons, through a pathway spatially and functionally distinct from Syt1-mediated synaptic vesicle release (PMID:21496647, PMID:28626000). It forms disulfide-linked homodimers and heterodimers with synaptotagmins III, V, and VI via a conserved N-terminal cysteine motif, with the first cysteine being essential for stable dimer formation (PMID:10531343). In hippocampal neurons, SYT10 expression is upregulated by pathological activity through the transcription factor NPAS4, and SYT10 is required for NPAS4-dependent neuroprotection against excitotoxicity (PMID:26936998). SYT10 is also prominently expressed in the suprachiasmatic nucleus, where it contributes to photic entrainment of circadian rhythms (PMID:21921292).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 1999 High

    Establishing how SYT10 oligomerizes revealed that a conserved N-terminal cysteine motif mediates disulfide-dependent homo- and heterodimerization with synaptotagmins III, V, and VI, defining SYT10 as a member of a biochemically distinct synaptotagmin subclass.

    Evidence Site-directed mutagenesis of cysteine residues with co-immunoprecipitation under reducing and non-reducing conditions

    PMID:10531343

    Open questions at the time
    • Functional significance of heterodimer versus homodimer formation is unknown
    • Whether dimerization is required for Ca²⁺-dependent exocytosis has not been tested
    • No structural data on the dimer interface
  2. 2003 Medium

    Cloning of human SYT10 established its primary structure — a 523-amino acid protein with a transmembrane domain and two C2 domains — and revealed restricted peripheral expression in pancreas, lung, and kidney, complementing its known neural expression.

    Evidence cDNA library screening and RT-PCR tissue survey

    PMID:14756426

    Open questions at the time
    • No protein-level validation of tissue expression
    • Ca²⁺-binding properties of the C2 domains were not characterized
  3. 2011 High

    The central mechanistic question — what cargo SYT10 senses Ca²⁺ for — was answered: SYT10 localizes to IGF-1-containing somatodendritic vesicles in olfactory neurons and is the Ca²⁺-sensor triggering their exocytosis, with Syt10 knockout abolishing activity-dependent IGF-1 secretion, reducing neuronal size and synapse number, phenotypes rescued by exogenous IGF-1.

    Evidence Syt10 knockout mice, live-cell colocalization imaging, Ca²⁺-dependent exocytosis assays, IGF-1 rescue experiments

    PMID:21496647

    Open questions at the time
    • Molecular mechanism of Ca²⁺ sensing (which C2 domain, Ca²⁺ affinity) is unresolved
    • Whether SYT10 directly binds the vesicle SNARE machinery has not been shown
    • Role in non-olfactory neuronal populations not addressed
  4. 2011 Medium

    Prominent SYT10 expression in the suprachiasmatic nucleus and a subtle circadian phenotype in Syt10-Cre homozygous mice implicated SYT10 in photic entrainment, broadening its physiological scope beyond olfactory neurons.

    Evidence Syt10-Cre knock-in mice, reporter crosses, circadian locomotor activity and phase-delay assays

    PMID:21921292

    Open questions at the time
    • The cargo vesicle and secreted factor in SCN neurons are unidentified
    • Phenotype is subtle and based on insertional disruption of one allele in Cre homozygotes
  5. 2016 High

    SYT10 was placed downstream of the transcription factor NPAS4 in an activity-dependent neuroprotective pathway: NPAS4 drives Syt10 upregulation upon excitotoxic stimulation, and Syt10 is required for NPAS4-mediated neuronal survival, establishing a transcriptional–secretory axis against neurodegeneration.

    Evidence Syt10 knockout mice, kainic acid excitotoxicity model, genetic epistasis between NPAS4 and Syt10, neuronal survival assays

    PMID:26936998

    Open questions at the time
    • Identity of the neuroprotective cargo released downstream of SYT10 in hippocampal neurons is unknown
    • Whether IGF-1 is the effector in this context, as in olfactory neurons, has not been tested
  6. 2017 Medium

    An unbiased RNAi screen extended SYT10's role to neuroendocrine dense-core vesicle exocytosis beyond the nervous system, confirming it as a general positive regulator of Ca²⁺-dependent regulated secretion.

    Evidence RNAi screen of ~139 C2-domain proteins in BON neuroendocrine cells measuring DCV exocytosis

    PMID:28626000

    Open questions at the time
    • Hit identified in a screen; individual rescue or overexpression validation not reported
    • Specific DCV cargo regulated by SYT10 in neuroendocrine cells is unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • Key unresolved questions include the Ca²⁺-binding properties and SNARE-interaction mechanism of SYT10's C2 domains, the identity of its cargo in hippocampal and SCN neurons, and whether its dimerization with other synaptotagmins modulates vesicle fusion specificity.
  • No reconstituted fusion assay with purified SYT10
  • No structural model of SYT10 C2 domains bound to Ca²⁺ or membranes
  • Functional role of heterodimerization in vivo is untested

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008289 lipid binding 2 GO:0140299 molecular sensor activity 2
Localization
GO:0031410 cytoplasmic vesicle 2 GO:0005886 plasma membrane 1
Pathway
R-HSA-112316 Neuronal System 3 R-HSA-5653656 Vesicle-mediated transport 2

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2011 Syt10 functions as the Ca2+-sensor that triggers activity-dependent IGF-1 exocytosis in olfactory bulb neurons. Syt10 colocalizes with IGF-1 in somatodendritic vesicles, and Ca2+-binding to Syt10 causes these vesicles to undergo exocytosis, secreting IGF-1. Deletion of Syt10 impaired activity-dependent IGF-1 secretion, resulting in smaller neurons and decreased synapse numbers, phenotypes fully rescued by exogenous IGF-1. This pathway is spatially and temporally distinct from Syt1-controlled synaptic vesicle exocytosis. Syt10 knockout mice, live-cell imaging/colocalization, exogenous IGF-1 rescue, Ca2+-dependent exocytosis assays Cell High 21496647
1999 Synaptotagmin-10 (SytX) forms beta-mercaptoethanol-sensitive heterodimers with Syt III, V, and VI via a conserved N-terminal cysteine motif. The first of three conserved N-terminal cysteine residues (at positions 10, 21, and 33 of mouse Syt III) is essential for stable homodimer and heterodimer formation among this subclass of synaptotagmins. Site-directed mutagenesis of cysteine residues, co-immunoprecipitation, reducing agent sensitivity assays The Journal of biological chemistry High 10531343
2003 Human SYT10 encodes a 523-amino acid protein sharing 94.6–94.8% homology to rat and mouse Syt10 at the protein level, containing one transmembrane region and two conserved C2 domains. RT-PCR revealed expression restricted to pancreas, lung, and kidney. cDNA library screening, RT-PCR, sequence analysis DNA sequence : the journal of DNA sequencing and mapping Medium 14756426
2016 Syt10 is identified as a downstream effector of the transcription factor NPAS4 in neuroprotection against excitotoxicity. Syt10 expression is strongly upregulated by pathophysiologic synaptic activity (kainic acid exposure), and its absence renders hippocampal neurons highly susceptible to excitotoxic insults. NPAS4 is required for the activity-induced increase in Syt10 levels, and NPAS4's ability to confer neuroprotection is severely diminished in Syt10 knockout neurons. Syt10 knockout mice, kainic acid excitotoxicity model, genetic epistasis (NPAS4-Syt10 pathway), neuronal survival assays The Journal of neuroscience High 26936998
2017 SYT10 was identified in an RNAi screen of ~139 C2 domain-containing proteins as a positive regulator of Ca2+-dependent dense-core vesicle (DCV) exocytosis in neuroendocrine cells, confirming its role in regulated secretion beyond neurons. Genome-wide RNAi screen in BON neuroendocrine cells measuring DCV exocytosis The Journal of cell biology Medium 28626000
2011 Syt10 is strongly expressed in the suprachiasmatic nucleus (SCN), and a Syt10-Cre driver mouse was generated by inserting Cre recombinase into the Syt10 locus. Syt10-Cre mice show high-efficiency Cre recombination specifically in SCN neurons (and testis), with homozygous Syt10-Cre mice showing slightly reduced light-induced phase delays, indicating a minor role in photic entrainment. Knock-in Cre driver generation, beta-galactosidase reporter crosses, circadian locomotor activity assays Journal of biological rhythms Medium 21921292
2023 A genome-wide gene-gene interaction study in 18,688 Parkinson's disease patients identified a significant interaction between a non-coding LRRK2 variant (rs76904798) and a SYT10 promoter region SNP (rs1007709), with an interaction OR of 1.80. SYT10 SNPs were also associated with age-at-onset of PD in LRRK2 p.G2019S mutation carriers, and SYT10 gene expression during neuronal development differed between affected and non-affected p.G2019S carriers, suggesting functional interplay between LRRK2 and SYT10 in neuronal exocytosis pathways. Case-only genome-wide gene-gene interaction analysis, independent cohort validation, gene expression analysis in patient-derived cells NPJ Parkinson's disease Low 37386035

Source papers

Stage 0 corpus · 26 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2004 The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome research 438 15489334
2013 Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders. Nature genetics 250 23583979
1999 Conserved N-terminal cysteine motif is essential for homo- and heterodimer formation of synaptotagmins III, V, VI, and X. The Journal of biological chemistry 151 10531343
2011 Activity-dependent IGF-1 exocytosis is controlled by the Ca(2+)-sensor synaptotagmin-10. Cell 119 21496647
2019 The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis. Nature communications 74 31586073
2011 Synaptotagmin10-Cre, a driver to disrupt clock genes in the SCN. Journal of biological rhythms 60 21921292
2008 Age-dependent spatial memory loss can be partially restored by immune activation. Rejuvenation research 60 18803478
2021 Genome-wide association study on milk production and somatic cell score for Thai dairy cattle using weighted single-step approach with random regression test-day model. Journal of dairy science 50 34756438
2017 BAIAP3, a C2 domain-containing Munc13 protein, controls the fate of dense-core vesicles in neuroendocrine cells. The Journal of cell biology 44 28626000
2016 Identification of Synaptotagmin 10 as Effector of NPAS4-Mediated Protection from Excitotoxic Neurodegeneration. The Journal of neuroscience : the official journal of the Society for Neuroscience 41 26936998
2019 Genetics and the heart rate response to exercise. Cellular and molecular life sciences : CMLS 38 30919020
2018 A robust internal control for high-precision DNA methylation analyses by droplet digital PCR. Clinical epigenetics 37 29484034
2015 DEAD-box helicase DDX27 regulates 3' end formation of ribosomal 47S RNA and stably associates with the PeBoW-complex. Experimental cell research 36 25825154
2019 Genome-Wide SNP Discovery in Indigenous Cattle Breeds of South Africa. Frontiers in genetics 19 30988672
2016 Screening and functional identification of lncRNAs under β-diketone antibiotic exposure to zebrafish (Danio rerio) using high-throughput sequencing. Aquatic toxicology (Amsterdam, Netherlands) 16 27951453
2017 Quantitative analysis of PKP2 and neighbouring genes in a patient with arrhythmogenic right ventricular cardiomyopathy caused by heterozygous PKP2 deletion. Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology 10 28431057
2024 Methylome-wide association study of adolescent depressive episode with psychotic symptoms and childhood trauma. Journal of affective disorders 5 39442698
2025 Hippocampal Proteomics Reveals the Novel Molecular Profiling of Postnatal Lead (Pb) Exposure on Autism-like Behaviors. Toxics 4 40559938
2023 Genome-wide case-only analysis of gene-gene interactions with known Parkinson's disease risk variants reveals link between LRRK2 and SYT10. NPJ Parkinson's disease 3 37386035
2024 Identification of potential new T cell activation molecules: a Bioinformatic Approach. Scientific reports 2 39333573
2003 Cloning and characterization of human synaptotagmin 10 gene. DNA sequence : the journal of DNA sequencing and mapping 2 14756426