Affinage

SSPN

Sarcospan · UniProt Q14714

Length
243 aa
Mass
26.6 kDa
Annotated
2026-06-10
20 papers in source corpus 3 papers cited in narrative 3 extracted findings
Cross-family judge vs UniProt: tie faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SSPN (Sarcospan/KRAG) encodes a transmembrane protein whose hydrophobicity profile resembles tetraspanin (transmembrane 4 superfamily) members and is highly expressed in muscle; it was originally identified through co-amplification with KRAS2 at chromosome 12p11.2 (PMID:8661122). In vascular cells, SSPN co-localizes with sarcoglycans and with dystrophin or utrophin, placing it within the sarcoglycan-sarcospan complex on both dystrophin and utrophin scaffolds (PMID:15583476). SSPN expression is controlled epigenetically, with complete DNA methylation of its promoter suppressing transcription in a reporter assay (PMID:29932866). Beyond these observations, the molecular function of SSPN has not been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 1996 Medium

    Established SSPN/KRAG as a candidate tetraspanin-like transmembrane protein and defined its genomic context and tissue expression, framing what kind of molecule it might be.

    Evidence RT-PCR, hydrophobicity analysis, Northern blot, and YAC/multiplex PCR mapping of the human KRAG locus

    PMID:8661122

    Open questions at the time
    • Structure inferred from hydrophobicity prediction only, with no experimental membrane topology
    • No functional reconstitution or mutagenesis
    • Significance of co-amplification with KRAS2 not mechanistically resolved
  2. 2004 Low

    Placed SSPN within the sarcoglycan-sarcospan complex in vascular cells by showing co-localization with sarcoglycans and dystrophin/utrophin, extending its complex membership beyond skeletal muscle.

    Evidence RT-PCR, immunofluorescence, and co-localization microscopy in human umbilical cord vessel smooth muscle and endothelial cells

    PMID:15583476

    Open questions at the time
    • Co-localization only, without co-IP or reciprocal physical validation
    • No functional perturbation establishing a role in the complex
    • Stoichiometry and direct binding partners undefined
  3. 2018 Low

    Demonstrated epigenetic control of SSPN, showing that promoter DNA methylation silences expression and linking this to metabolic traits.

    Evidence Luciferase reporter assay with methylated SSPN promoter construct, pyrosequencing, and genome-wide methylation/expression data in MCF7 cells

    PMID:29932866

    Open questions at the time
    • Mechanistic claim rests on a single reporter assay; metabolic associations are correlative
    • Methylation-sensitive transcription factors at the promoter not identified
    • Causal link between SSPN silencing and adipose/glucose phenotypes not established

Open questions

Synthesis pass · forward-looking unresolved questions
  • The molecular activity of SSPN within the sarcoglycan-sarcospan complex remains undefined: how it contributes to complex assembly, scaffold stability, or signaling has not been determined.
  • No direct binding assays defining SSPN interaction interfaces
  • No loss-of-function phenotype reported in the corpus
  • No structural model of the protein

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Localization
GO:0005886 plasma membrane 2
Complex memberships
sarcoglycan-sarcospan complex

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1996 The human KRAG gene (SSPN) encodes a protein with hydrophobicity plots suggesting a structure closely resembling transmembrane 4 superfamily members; it is co-amplified with KRAS2 in tumors and maps to chromosome 12p11.2. Northern analysis confirmed high-level expression in muscle and evidence of alternate splicing. RT-PCR, hydrophobicity analysis, Northern blot, YAC mapping, multiplex PCR Genomics Medium 8661122
2004 SSPN is expressed at the mRNA and protein level in smooth muscle and endothelial cells of human umbilical cord vessels, where it co-localizes with sarcoglycans and with dystrophin or utrophin, indicating it forms part of the sarcoglycan-sarcospan complex associated with both dystrophin and utrophin scaffolds in vascular cells. RT-PCR, immunofluorescence, co-localization microscopy Journal of vascular research Low 15583476
2018 Complete DNA methylation of the SSPN promoter suppresses SSPN gene expression, as demonstrated by a luciferase reporter assay in MCF7 cells, linking epigenetic silencing of SSPN to changes in adipose tissue distribution and glucose metabolism traits. Luciferase reporter assay with methylated SSPN promoter construct, pyrosequencing, genome-wide methylation/expression data FASEB journal Low 29932866

Source papers

Stage 0 corpus · 20 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2010 Structure and biological importance of the Spn1-Spt6 interaction, and its regulatory role in nucleosome binding. Molecular cell 69 21094070
2018 Supplemental parenteral nutrition improves immunity with unchanged carbohydrate and protein metabolism in critically ill patients: The SPN2 randomized tracer study. Clinical nutrition (Edinburgh, Scotland) 68 30448193
2007 Spn1 regulates the recruitment of Spt6 and the Swi/Snf complex during transcriptional activation by RNA polymerase II. Molecular and cellular biology 63 18086892
2002 SPN1, a conserved gene identified by suppression of a postrecruitment-defective yeast TATA-binding protein mutant. Genetics 40 12524336
2011 Spn1 regulates the GNBP3-dependent Toll signaling pathway in Drosophila melanogaster. Molecular and cellular biology 39 21576362
2012 Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta. Standards in genomic sciences 37 22768363
1996 Coamplification in tumors of KRAS2, type 2 inositol 1,4,5 triphosphate receptor gene, and a novel human gene, KRAG. Genomics 35 8661122
2020 The conserved elongation factor Spn1 is required for normal transcription, histone modifications, and splicing in Saccharomyces cerevisiae. Nucleic acids research 28 32941642
2018 The elongation factor Spn1 is a multi-functional chromatin binding protein. Nucleic acids research 22 29300974
2018 Casein Kinase II Phosphorylation of Spt6 Enforces Transcriptional Fidelity by Maintaining Spn1-Spt6 Interaction. Cell reports 20 30566871
2022 Spn1 and Its Dynamic Interactions with Spt6, Histones and Nucleosomes. Journal of molecular biology 13 35595162
2020 The SSPN Score, a Novel Scoring System Incorporating PBRM1 Expression, Predicts Postoperative Recurrence for Patients with Non-metastatic Clear Cell Renal Cell Carcinoma. Annals of surgical oncology 13 32940805
2004 Expression analysis of the SG-SSPN complex in smooth muscle and endothelial cells of human umbilical cord vessels. Journal of vascular research 13 15583476
2022 Suppressor mutations that make the essential transcription factor Spn1/Iws1 dispensable in Saccharomyces cerevisiae. Genetics 10 35977387
2018 DNA methylation of SSPN is linked to adipose tissue distribution and glucose metabolism. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 9 29932866
2018 Genome Instability Is Promoted by the Chromatin-Binding Protein Spn1 in Saccharomyces cerevisiae. Genetics 6 30301740
2025 The histone chaperone Spn1 preserves chromatin protections at promoters and nucleosome positioning in open reading frames. G3 (Bethesda, Md.) 5 39960479
2025 Spt6-Spn1 interaction is required for RNA polymerase II association and precise nucleosome positioning along transcribed genes. The Journal of biological chemistry 3 40127868
2025 THE HISTONE CHAPERONE SPN1 PRESERVES CHROMATIN PROTECTIONS AT PROMOTERS AND NUCLEOSOME POSITIONING IN OPEN READING FRAMES. bioRxiv : the preprint server for biology 2 38559248
2015 Combining dehydration, construct optimization and improved data collection to solve the crystal structure of a CRM1-RanGTP-SPN1-Nup214 quaternary nuclear export complex. Acta crystallographica. Section F, Structural biology communications 2 26625290

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