Affinage

SNTG2

Gamma-2-syntrophin · UniProt Q9NY99

Round 2 corrected
Length
539 aa
Mass
60.2 kDa
Annotated
2026-04-28
59 papers in source corpus 3 papers cited in narrative 3 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SNTG2 (gamma-2-syntrophin) is a neuronal scaffolding protein that binds the C-terminal region of dystrophin and dystrophin-related proteins via its syntrophin unique domain, linking it to a modified dystrophin-associated protein complex expressed selectively in central neurons (PMID:10747910). Its PDZ domain directly engages the C-terminus of the voltage-gated sodium channel SCN5A, shifting channel activation kinetics and conferring mechanosensitivity in intestinal smooth muscle cells (PMID:12429735). The same PDZ domain mediates interactions with the autism-associated synaptic adhesion molecules neuroligin-3 and neuroligin-4X, and autism-linked missense mutations in these neuroligins disrupt SNTG2 binding (PMID:17292328).

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2000 High

    Identification of SNTG2 as a new syntrophin family member that directly binds dystrophin's C-terminus established that the dystrophin-associated protein complex in central neurons includes a neuron-specific syntrophin isoform.

    Evidence Yeast two-hybrid, GST pull-down, immunohistochemistry, and RNA in situ hybridization in rat and human tissues

    PMID:10747910

    Open questions at the time
    • No knockout or knockdown phenotype reported
    • Whether SNTG2 competes with other syntrophins for dystrophin binding sites is unresolved
    • Subcellular localization within neurons (e.g., synaptic vs. somatic) was not precisely defined
  2. 2002 High

    Demonstration that SNTG2's PDZ domain binds the SCN5A C-terminus and controls channel gating and mechanosensitivity revealed a direct ion-channel-regulatory function for this scaffolding protein.

    Evidence Yeast two-hybrid and GST pull-down for binding; whole-cell patch-clamp in co-transfected HEK293 cells and peptide-disruption experiments in native intestinal smooth muscle cells

    PMID:12429735

    Open questions at the time
    • In vivo consequences of SNTG2 loss on SCN5A function have not been tested
    • Whether SNTG2 regulates other voltage-gated channels via its PDZ domain is unknown
    • Structural basis of the PDZ–SCN5A interaction has not been resolved
  3. 2007 Medium

    Discovery that SNTG2 binds neuroligins 3 and 4X—and that autism-associated mutations impair this interaction—implicated SNTG2 in the postsynaptic scaffolding of autism-relevant adhesion molecules.

    Evidence Yeast two-hybrid screen and co-immunoprecipitation with wild-type and autism-mutant neuroligin constructs

    PMID:17292328

    Open questions at the time
    • No cellular or synaptic phenotype was reported upon disruption of the NL–SNTG2 interaction
    • Whether SNTG2 links neuroligins to the dystrophin complex at synapses has not been shown
    • The finding has not been independently replicated in a second laboratory

Open questions

Synthesis pass · forward-looking unresolved questions
  • The in vivo physiological roles of SNTG2 remain undefined: no genetic loss-of-function model or human disease association has been reported, and whether its PDZ-domain partners (SCN5A, neuroligins) are regulated simultaneously or in distinct tissue contexts is unresolved.
  • No animal knockout or conditional deletion phenotype exists
  • Full interactome of the SNTG2 PDZ domain has not been profiled
  • Role of SNTG2 in synaptic versus extra-synaptic compartments is undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 3
Localization
GO:0005886 plasma membrane 2
Pathway
R-HSA-112316 Neuronal System 2
Complex memberships
dystrophin-associated protein complex

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2000 Gamma2-syntrophin (SNTG2) was identified as a novel member of the syntrophin family, encoded by a gene on chromosome 2p25 with at least 17 exons. Yeast two-hybrid and GST pull-down experiments demonstrated that SNTG2 directly binds the C-terminal region of dystrophin and related proteins (dystrophin-associated protein complex). Immunohistochemistry and RNA in situ hybridization showed that SNTG2 protein is expressed in rat and human central neurons, suggesting a specialized role for a modified dystrophin-associated complex in the central nervous system. Yeast two-hybrid, GST pull-down, immunohistochemistry, RNA in situ hybridization The Journal of biological chemistry High 10747910
2002 The PDZ domain of SNTG2 directly interacts with the C-terminus of SCN5A (the cardiac/intestinal Na+ channel alpha subunit). This was established by yeast two-hybrid and GST pull-down assays. Co-transfection of SNTG2 with SCN5A in HEK293 cells markedly shifted SCN5A activation kinetics and reduced Na+ current availability. In native intestinal smooth muscle cells, disruption of the SCN5A C-terminus–SNTG2 PDZ domain interaction using blocking peptides abolished mechanosensitivity of the Na+ channel, establishing SNTG2 as an essential regulator of SCN5A gating and mechanosensitivity. Yeast two-hybrid, GST pull-down, co-transfection with whole-cell patch clamp, peptide disruption in native cells, laser capture microdissection, single-cell PCR, immunohistochemistry The Journal of biological chemistry High 12429735
2007 SNTG2 was identified as a direct binding partner of neuroligin-3 (NL3) in a yeast two-hybrid screen, and the interaction was confirmed biochemically. SNTG2 also bound neuroligin-4X (NL4X) and NL4Y. Autism-associated missense mutations in NL3 and NL4X significantly impaired their interaction with SNTG2, implying that disruption of the NL–SNTG2 complex may contribute to autism spectrum disorder etiology. Yeast two-hybrid, co-immunoprecipitation / biochemical binding assay with autism-related mutant constructs Biochemical and biophysical research communications Medium 17292328

Source papers

Stage 0 corpus · 59 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2014 A proteome-scale map of the human interactome network. Cell 977 25416956
2020 A reference map of the human binary protein interactome. Nature 849 32296183
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2017 Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. Proceedings of the National Academy of Sciences of the United States of America 282 28611215
2011 Long term culture of mesenchymal stem cells in hypoxia promotes a genetic program maintaining their undifferentiated and multipotent status. BMC cell biology 177 21450070
2000 Gamma1- and gamma2-syntrophins, two novel dystrophin-binding proteins localized in neuronal cells. The Journal of biological chemistry 108 10747910
2018 Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei. Molecular & cellular proteomics : MCP 101 30021884
2013 Visualizing virus assembly intermediates inside marine cyanobacteria. Nature 99 24107993
1998 Role of vesicle-associated syntaxin 5 in the assembly of pre-Golgi intermediates. Science (New York, N.Y.) 99 9445473
2013 Brain-specific angiogenesis inhibitor-1 signaling, regulation, and enrichment in the postsynaptic density. The Journal of biological chemistry 96 23782696
2002 Syntrophin gamma 2 regulates SCN5A gating by a PDZ domain-mediated interaction. The Journal of biological chemistry 87 12429735
2007 Genome sequence, structural proteins, and capsid organization of the cyanophage Syn5: a "horned" bacteriophage of marine synechococcus. Journal of molecular biology 82 17383677
2015 Quantifying domain-ligand affinities and specificities by high-throughput holdup assay. Nature methods 68 26053890
2005 An interstitial deletion-insertion involving chromosomes 2p25.3 and Xq27.1, near SOX3, causes X-linked recessive hypoparathyroidism. The Journal of clinical investigation 68 16167084
2001 Creation of genome-wide protein expression libraries using random activation of gene expression. Nature biotechnology 59 11329013
2013 The human PDZome: a gateway to PSD95-Disc large-zonula occludens (PDZ)-mediated functions. Molecular & cellular proteomics : MCP 56 23722234
2006 Genetic dissection of intermated recombinant inbred lines using a new genetic map of maize. Genetics 56 16951074
1998 The role of herpes simplex virus glycoproteins in the virus replication cycle. Acta virologica 49 9770079
2018 Visualizing Individual RuBisCO and Its Assembly into Carboxysomes in Marine Cyanobacteria by Cryo-Electron Tomography. Journal of molecular biology 48 30138616
2016 Monoubiquitination of Syntaxin 5 Regulates Golgi Membrane Dynamics during the Cell Cycle. Developmental cell 46 27404360
1998 Chylomicron remnant uptake is regulated by the expression and function of heparan sulfate proteoglycan in hepatocytes. Journal of lipid research 40 9555948
2013 Early-onset obesity and paternal 2pter deletion encompassing the ACP1, TMEM18, and MYT1L genes. European journal of human genetics : EJHG 39 24129437
2022 Quantitative fragmentomics allow affinity mapping of interactomes. Nature communications 33 36115835
2017 Hyperglycaemic memory affects the neurovascular unit of the retina in a diabetic mouse model. Diabetologia 30 28321468
2015 Synthesis of 2'-Fluoro RNA by Syn5 RNA polymerase. Nucleic acids research 28 25897116
2012 Monozygotic twins discordant for submicroscopic chromosomal anomalies in 2p25.3 region detected by array CGH. Clinical genetics 28 23061379
1993 Tumor-initiating activity on mouse skin of bay region diol-epoxides of 5,6-dimethylchrysene and benzo[c]phenanthrene. Carcinogenesis 26 8222050
2012 The RNA polymerase of marine cyanophage Syn5. The Journal of biological chemistry 25 23258537
2019 Rewiring of RSK-PDZ Interactome by Linear Motif Phosphorylation. Journal of molecular biology 24 30726710
2010 Intracellular assembly of cyanophage Syn5 proceeds through a scaffold-containing procapsid. Journal of virology 23 21177804
2012 Nef interaction with actin compromises human podocyte actin cytoskeletal integrity. Experimental and molecular pathology 22 22721673
2007 Neuroligins 3 and 4X interact with syntrophin-gamma2, and the interactions are affected by autism-related mutations. Biochemical and biophysical research communications 22 17292328
2013 Syn5 RNA polymerase synthesizes precise run-off RNA products. Nucleic acids research 21 24285303
2014 Protruding knob-like proteins violate local symmetries in an icosahedral marine virus. Nature communications 19 24985522
2014 A new patient with a terminal de novo 2p25.3 deletion of 1.9 Mb associated with early-onset of obesity, intellectual disabilities and hyperkinetic disorder. Molecular cytogenetics 19 25126114
2015 Genomic structural variants are linked with intellectual disability. Journal of neural transmission (Vienna, Austria : 1996) 17 25626716
2014 Valosin-containing protein-interacting membrane protein (VIMP) links the endoplasmic reticulum with microtubules in concert with cytoskeleton-linking membrane protein (CLIMP)-63. The Journal of biological chemistry 17 25008318
1992 Metabolism and DNA binding of 5,6-dimethylchrysene in mouse skin. Chemical research in toxicology 15 1643254
2018 Diagnostic efficacy and new variants in isolated and complex autism spectrum disorder using molecular karyotyping. Journal of applied genetics 13 29564645
2020 Overexpression of SNTG2, TRAF3IP2, and ITGA6 transcripts is associated with osteoporotic vertebral fracture in elderly women from community. Molecular genetics & genomic medicine 10 32602654
2006 Highly stereoselective beta-anomeric glycosidation of a 2'-deoxy syn-5'-configured 4'-spironucleoside. The Journal of organic chemistry 10 16468819
2024 Genome-wide 5-hydroxymethylcytosines in circulating cell-free DNA as noninvasive diagnostic markers for gastric cancer. Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association 9 38584223
2013 Prenatal diagnosis of ring chromosome 2 with lissencephaly and 2p25.3 and 2q37.3 microdeletions detected using array comparative genomic hybridization. Gene 7 23403238
2025 EndoMAP.v1 charts the structural landscape of human early endosome complexes. Nature 6 40437099
2020 Studies of mice deleted for Sox3 and uc482: relevance to X-linked hypoparathyroidism. Endocrine connections 6 31961795
2023 The role of ferroptosis-related genes in airway epithelial cells of asthmatic patients based on bioinformatics. Medicine 5 36862916
2022 Effects of post-silking low temperature on the starch and protein metabolism, endogenous hormone contents, and quality of grains in waxy maize. Frontiers in plant science 4 36407592
2019 Promoter RNA sequencing (PRSeq) for the massive and quantitative promoter analysis in vitro. Scientific reports 4 30816266
2014 [Genetic diagnosis and analysis of related genes for a pedigree with 2p25 and 12p13 cryptic rearrangements]. Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics 3 25119907
2024 Mediation role of DNA methylation in association between handgrip strength and cognitive function in monozygotic twins. Journal of human genetics 2 38649436
2024 DNA Methylation Patterns Associated with Tinnitus in Young Adults-A Pilot Study. Journal of the Association for Research in Otolaryngology : JARO 2 39147981
2021 Inherited L1 Retrotransposon Insertions Associated With Risk for Schizophrenia and Bipolar Disorder. Schizophrenia bulletin open 2 34901866
2013 Two novel proteins of cyanophage Syn5 compose its unusual horn structure. Journal of virology 2 24307583
2024 Effects of Sulfur Application on the Quality of Fresh Waxy Maize. Plants (Basel, Switzerland) 1 39409548
2025 The associations among maternal gestational weight gain, cord blood DNA methylation, and offspring childhood high BMI. Obesity (Silver Spring, Md.) 0 40108365
2025 Single-subunit RNA polymerases, KpnP, Ro45Iw, and CD23823, with precise terminal synthesis. The Journal of biological chemistry 0 40562098