Affinage

SNCAIP

Synphilin-1 · UniProt Q9Y6H5

Length
919 aa
Mass
100.4 kDa
Annotated
2026-04-28
38 papers in source corpus 7 papers cited in narrative 7 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

Synphilin-1 (SNCAIP) is an alpha-synuclein-interacting protein that promotes the formation of cytoplasmic inclusions resembling Lewy bodies, linking it to the pathogenesis of Parkinson's disease. Identified through yeast two-hybrid screening, synphilin-1 directly binds alpha-synuclein, and co-expression of both proteins in mammalian cells produces eosinophilic cytoplasmic inclusions (PMID:10319874). An alternative isoform, synphilin-1A, exhibits enhanced aggregatory properties compared to synphilin-1, causes neurotoxicity in primary neurons and dopaminergic cells, and is present in Lewy bodies of Parkinson's disease and Diffuse Lewy Body disease patients, connecting SNCAIP to ubiquitin-mediated protein degradation and neurodegeneration (PMID:16595633). Circuit-specific expression of synphilin-1 in Drosophila dopaminergic neurons produces motor deficits and reduced survival, while expression in serotonergic neurons causes olfactory and visual symptoms, establishing distinct neuronal circuit contributions to Parkinson's-like phenotypes (PMID:36857384).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 1999 High

    Establishing that alpha-synuclein has a cytoplasmic binding partner capable of driving inclusion formation resolved how synuclein aggregation might be nucleated in vivo and identified synphilin-1 as a candidate Lewy body component.

    Evidence Yeast two-hybrid screen, co-immunoprecipitation from neuronal lysates, and co-transfection in HEK 293 cells producing eosinophilic inclusions

    PMID:10319874

    Open questions at the time
    • Whether synphilin-1 is required for Lewy body formation in vivo was not tested
    • The structural determinants of the synphilin-1/alpha-synuclein interaction were not mapped
    • Post-translational modifications regulating this interaction were not addressed
  2. 2000 Medium

    Mapping the SNCAIP gene structure to chromosome 5q23.1-23.3 and demonstrating synphilin-1 protein in brain neuropil with a distribution paralleling alpha-synuclein provided anatomical plausibility for their in vivo interaction.

    Evidence Genomic cloning, exon mapping, chromosomal localization, and immunohistochemistry of human postmortem brain

    PMID:10967135

    Open questions at the time
    • Co-localization at the subcellular level with alpha-synuclein was not demonstrated
    • Expression in disease-affected versus unaffected brain regions was not compared
  3. 2006 High

    Discovery of synphilin-1A, an alternative isoform with enhanced aggregation and neurotoxicity present in patient Lewy bodies, established that SNCAIP isoform diversity directly modulates pathogenicity and linked the gene to neuronal cell death.

    Evidence Molecular cloning of synphilin-1A, overexpression in HEK 293 cells, primary neurons, and dopaminergic cells; detergent-insolubility fractionation and immunohistochemistry of PD and DLB patient brain tissue

    PMID:16595633

    Open questions at the time
    • The relative abundance and regulation of synphilin-1A versus synphilin-1 in disease progression is unknown
    • Whether synphilin-1A aggregation is reversible or targetable was not tested
  4. 2021 Medium

    Demonstrating that glyoxalase system disruption enhances synphilin-1 inclusion formation via oxidative stress and impaired autophagic clearance connected synphilin-1 aggregation to metabolic stress pathways.

    Evidence Expression of dsRed-tagged human SNCAIP in yeast strains deleted for Glo1, Glo2, and Gre3; fluorescence microscopy and growth assays

    PMID:33562355

    Open questions at the time
    • Whether these metabolic interactions apply in mammalian neurons has not been tested
    • Direct measurement of autophagic flux was not performed
    • The mechanism linking glyoxalase deficiency to synphilin-1 aggregation (e.g., methylglyoxal modification) was not resolved
  5. 2023 Medium

    Circuit-specific expression in Drosophila revealed that synphilin-1 drives distinct Parkinson's-like phenotypes depending on the neuronal subtype affected, dissociating motor from sensory symptoms.

    Evidence Targeted transgenic expression in Drosophila serotonergic versus dopaminergic neurons with behavioral and survival analyses; nicotine rescue experiments

    PMID:36857384

    Open questions at the time
    • Whether circuit-specific phenotypes reflect differential aggregation or differential vulnerability is unresolved
    • Translation of Drosophila circuit findings to mammalian models has not been attempted
    • The mechanism of nicotine-mediated suppression was not determined

Open questions

Synthesis pass · forward-looking unresolved questions
  • The endogenous physiological function of synphilin-1 beyond its role in pathological aggregation remains undefined, and whether loss of synphilin-1 function contributes to neurodegeneration is unknown.
  • No loss-of-function or knockout studies in mammalian models have been reported
  • No structural model of the synphilin-1/alpha-synuclein complex exists
  • The normal synaptic function of synphilin-1 is uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Localization
GO:0005829 cytosol 2
Pathway
R-HSA-1643685 Disease 3
Partners

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1999 Synphilin-1 (SNCAIP) was identified as a direct interaction partner of alpha-synuclein via yeast two-hybrid screening, and co-transfection of both proteins in HEK 293 cells produced cytoplasmic eosinophilic inclusions resembling Lewy bodies, establishing synphilin-1's role in promoting cytosolic inclusion formation. Yeast two-hybrid screen, in vivo co-immunoprecipitation in neurons, co-transfection in HEK 293 cells Nature genetics High 10319874
2006 Synphilin-1A, an alternative isoform encoded by SNCAIP with a distinct exon organization and reading frame, has enhanced aggregatory properties compared to synphilin-1, binds alpha-synuclein, induces intracellular aggregate formation in HEK 293 cells, primary neuronal cultures and dopaminergic cells, causes neurotoxicity upon overexpression in neurons, and is present in Lewy bodies of Parkinson's disease and Diffuse Lewy Body disease patients. Molecular cloning, co-transfection/overexpression in cell lines and primary neurons, detergent-insolubility fractionation of patient brain tissue, immunohistochemistry Proceedings of the National Academy of Sciences of the United States of America High 16595633
2000 The human SNCAIP gene contains ten exons encoding synphilin-1, maps to chromosome 5q23.1-23.3, and synphilin-1 protein is present in neuropil of human postmortem brain tissue, with a distribution similar to alpha-synuclein. Genomic cloning and exon mapping, chromosomal mapping, immunohistochemistry of human postmortem brain Mammalian genome : official journal of the International Mammalian Genome Society Medium 10967135
2004 Synphilin-1 is linked to ubiquitin-mediated protein degradation and synaptic function; extensive in vitro studies identified novel synphilin-1-interacting proteins and an R621C mutation as a susceptibility factor for Parkinson's disease. In vitro interaction studies, mutational analysis Cell and tissue research Low 15322916
2021 In yeast models, disruption of the glyoxalase system (Glo2) and aldose reductase (Gre3) increased formation of large Synphilin-1 inclusions, correlating with enhanced oxidative stress and inhibition of exponential growth, likely through deregulation of autophagic degradation capacity due to excessive aggresome build-up. Expression of dsRed-tagged human SNCAIP in S. cerevisiae and S. pombe strains deleted for Glo1, Glo2, and Gre3; fluorescence microscopy; growth assays International journal of molecular sciences Medium 33562355
2023 Expression of human Synphilin-1 in Drosophila serotonergic neurons caused olfactory and visual symptoms, while expression in dopaminergic neurons caused motor symptoms and reduced survival, establishing circuit-specific contributions to Parkinson's-like phenotypes; chronic nicotine treatment suppressed several of these symptoms. Targeted transgenic expression in Drosophila serotonergic and/or dopaminergic neurons, behavioral assays, survival analysis, nicotine treatment PloS one Medium 36857384
2015 Porcine synphilin-1 splice variants lacking one or more exons were identified; the encoded isoforms lack functional domains important for protein degradation, suggesting domain-specific roles of synphilin-1 in proteolytic pathways. RT-PCR cloning of porcine SNCAIP cDNA, RNAseq expression profiling, domain analysis of splice variants Meta gene Low 26101749

Source papers

Stage 0 corpus · 38 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2012 Subgroup-specific structural variation across 1,000 medulloblastoma genomes. Nature 727 22832581
1999 Synphilin-1 associates with alpha-synuclein and promotes the formation of cytosolic inclusions. Nature genetics 405 10319874
2020 Organelle-specific autophagy in inflammatory diseases: a potential therapeutic target underlying the quality control of multiple organelles. Autophagy 339 32048886
2014 Autophagy modulates SNCA/α-synuclein release, thereby generating a hostile microenvironment. Autophagy 185 25484190
2014 Genome-wide DNA methylation study identifies significant epigenomic changes in osteoarthritic cartilage. Arthritis & rheumatology (Hoboken, N.J.) 117 24980887
2021 Identification of sixteen novel candidate genes for late onset Parkinson's disease. Molecular neurodegeneration 69 34148545
2013 Identification of candidate oncogenes in human colorectal cancers with microsatellite instability. Gastroenterology 59 23684749
2012 Aberrant alternative splicing events in Parkinson's disease. Cell transplantation 44 23127794
2006 Synphilin-1A: an aggregation-prone isoform of synphilin-1 that causes neuronal death and is present in aggregates from alpha-synucleinopathy patients. Proceedings of the National Academy of Sciences of the United States of America 44 16595633
2017 The long noncoding RNA linc-NeD125 controls the expression of medulloblastoma driver genes by microRNA sponge activity. Oncotarget 41 28415684
2022 Molecular Stratification of Medulloblastoma: Clinical Outcomes and Therapeutic Interventions. Anticancer research 28 35489737
2015 Derivatives containing both coumarin and benzimidazole potently induce caspase-dependent apoptosis of cancer cells through inhibition of PI3K-AKT-mTOR signaling. Anti-cancer drugs 26 25811964
2016 Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence. Frontiers in genetics 24 27047539
2004 The role of synphilin-1 in synaptic function and protein degradation. Cell and tissue research 24 15322916
2015 Genome-Wide Association Study of Event-Free Survival in Diffuse Large B-Cell Lymphoma Treated With Immunochemotherapy. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 22 26460308
2000 Organization of the human synphilin-1 gene, a candidate for Parkinson's disease. Mammalian genome : official journal of the International Mammalian Genome Society 21 10967135
2019 Global Gene Knockout of Kcnip3 Enhances Pain Sensitivity and Exacerbates Negative Emotions in Rats. Frontiers in molecular neuroscience 15 30740043
2020 Genomic Analysis Reveals Novel Specific Metastatic Mutations in Chinese Clear Cell Renal Cell Carcinoma. BioMed research international 13 33062672
2017 Hypermethylation of Synphilin-1, Alpha-Synuclein-Interacting Protein (SNCAIP) Gene in the Cerebral Cortex of Patients with Sporadic Parkinson's Disease. Brain sciences 13 28653979
2011 Identification of Parkinson's disease candidate genes using CAESAR and screening of MAPT and SNCAIP in South African Parkinson's disease patients. Journal of neural transmission (Vienna, Austria : 1996) 13 21344240
2003 Case-control study of the alpha-synuclein interacting protein gene and Parkinson's disease. Movement disorders : official journal of the Movement Disorder Society 13 14639662
2017 Genomic dissection and prediction of feed intake and residual feed intake traits using a longitudinal model in F2 chickens. Animal : an international journal of animal bioscience 12 29268803
2023 Parkinsonian phenotypes induced by Synphilin-1 expression are differentially contributed by serotonergic and dopaminergic circuits and suppressed by nicotine treatment. PloS one 10 36857384
2022 Antitumor Activity of Choerospondias axillaris Fruit Extract by Regulating the Expression of SNCAIP and SNCA on MDA-MB-231 Cells. Asian Pacific journal of cancer prevention : APJCP 8 35633541
2021 Genome-Wide Survey for Microdeletions or -Duplications in 155 Patients with Lower Urinary Tract Obstructions (LUTO). Genes 7 34573432
2025 Amyloid-β, Tau, and α-Synuclein Protein Interactomes as Therapeutic Targets in Neurodegenerative Diseases. Cellular and molecular neurobiology 6 41051722
2021 Distinctive Properties of Endothelial Cells from Tumor and Normal Tissue in Human Breast Cancer. International journal of molecular sciences 6 34445568
2019 Immune-related somatic mutation genes are enriched in PDACs with diabetes. Translational oncology 6 31203147
2025 Elucidate biomarkers and the molecular pathways associated with genetic variants that contribute to the etiology of Parkinson's disease. Acta neurologica Belgica 3 41026459
2024 Key Cell-in-Cell Related Genes are Identified by Bioinformatics and Experiments in Glioblastoma. Cancer management and research 3 39253064
2024 Co-occurrence of Parkinson's disease and Retinitis Pigmentosa: A genetic and in silico analysis. Neuroscience 2 39674535
2021 Yeasts as Complementary Model Systems for the Study of the Pathological Repercussions of Enhanced Synphilin-1 Glycation and Oxidation. International journal of molecular sciences 2 33562355
2015 Splicing variants of porcine synphilin-1. Meta gene 2 26101749
2025 Robust molecular subgrouping and reference-free aneuploidy detection in medulloblastoma using low-depth whole genome bisulfite sequencing. Acta neuropathologica communications 1 40556027
2025 Synergetic effect of taurine/taurine nanoparticles along with Sinemet® against rotenone-induced Parkinson's disease in mice. Toxicology research 1 41425758
2026 Identification of CTHRC1 as a novel candidate for neurodevelopmental disorders. Frontiers in aging neuroscience 0 41658012
2025 Rare Copy Number Variants Intersecting Parkinson's-associated Genes in a Cohort of children With Autism Spectrum Disorders. Neuroscience insights 0 40474964
2020 Mutation Analysis of the Genes Associated with Parkinson's Disease in a Finnish Cohort of Early-Onset Dementia. Journal of Alzheimer's disease : JAD 0 32568194