Affinage

SLC5A7

High affinity choline transporter 1 · UniProt Q9GZV3

Length
580 aa
Mass
63.2 kDa
Annotated
2026-06-10
48 papers in source corpus 13 papers cited in narrative 13 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 7/7 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SLC5A7 (CHT1/hCHT) is a Na+-dependent high-affinity choline transporter that mediates the choline reuptake step supplying acetylcholine synthesis (PMID:17005849, PMID:25073461). Expressed in Xenopus oocytes it carries out Na+- and Cl−-dependent choline transport and a hemicholinium-3 (HC-3)-sensitive choline-induced current, with Cl− acting in a regulatory rather than co-transported role; external protons titrate residues supporting choline binding to reduce transport and HC-3 binding with a pKa near 7.4 (PMID:17005849). The protein adopts a 13-transmembrane topology in the SLC5 (Na+/glucose co-transporter) family (PMID:25073461), and cryo-EM of the closely related bacterial ortholog sfCHT establishes a conserved LeuT-fold inward-facing translocation mechanism with Na+ coordination and a cytosolic choline-release pathway recapitulated by CHT1 mutagenesis (PMID:42213839). Transporter availability is set largely by regulated surface trafficking: CHT1 undergoes rapid clathrin-mediated endocytosis dependent on a C-terminal dileucine-like motif, with an intracellular endosomal and synaptic-vesicle reserve pool, such that disrupting the motif (L530A/V531A) enhances surface expression and current (PMID:16524384, PMID:17005849). Surface levels are downregulated by Par-4 binding, which reduces membrane incorporation without changing choline affinity (PMID:15090548), and by Nedd4-2-mediated ubiquitination (PMID:22361880), while insulin acting through PI3-kinase/Akt acutely increases surface CHT and choline uptake (PMID:26161852). Beyond cholinergic neurons, CHT1 is also expressed and functionally active in non-neuronal tissues including ciliated tracheal epithelium and vascular cells (PMID:12654636, PMID:14623932). A coding SNP causing an Ile-to-Val substitution in the third transmembrane segment reduces uptake activity to 50–60% of wild-type (PMID:25073461).

Mechanistic history

Synthesis pass · year-by-year structured walk · 11 steps
  1. 2003 Medium

    Established that CHT1 function is not restricted to neurons by demonstrating active, HC-3-sensitive high-affinity choline uptake in non-neuronal epithelial and vascular cells, broadening its physiological scope to peripheral ACh synthesis.

    Evidence RT-PCR, immunohistochemistry, electron microscopy, and [3H]-choline uptake in tracheal epithelium and aortic segments/vascular cells

    PMID:12654636 PMID:14623932

    Open questions at the time
    • Functional consequence of non-neuronal ACh synthesis not defined
    • Trafficking regulation in these cells not addressed
  2. 2004 Medium

    Identified Par-4 as a physical partner that negatively regulates CHT1 by limiting its plasma-membrane incorporation, providing an early mechanism for setting surface transporter density.

    Evidence Reciprocal Co-IP with domain mapping, cell-surface biotinylation, and kinetic choline uptake in transfected IMR-32 neural cells

    PMID:15090548

    Open questions at the time
    • Single lab
    • Physiological context of Par-4 regulation in vivo unclear
    • Mechanism by which Par-4 blocks membrane incorporation undefined
  3. 2006 High

    Defined the core transport biophysics and the endocytic basis for a reserve pool, showing Na+/Cl−-dependent choline transport, proton inactivation, and a dileucine-dependent clathrin endocytosis pathway with a surface-enhancing trafficking mutant.

    Evidence Voltage-clamp electrophysiology, choline uptake and pH titration in Xenopus oocytes; subcellular fractionation, immunolocalization, and dileucine-motif mutagenesis (review synthesis)

    PMID:16524384 PMID:17005849

    Open questions at the time
    • Stoichiometry of Na+ coupling not fully resolved
    • Endogenous trigger for endocytic cycling not defined
  4. 2006 Medium

    Linked CHT1 dysfunction to a presenilin-1 mutation, showing the M146V allele impairs CHT1 ligand-binding affinity rather than its surface expression.

    Evidence Choline uptake kinetics, HC-3 binding, and biotinylation in primary cortical neurons from PS-1 M146V knock-in mice

    PMID:17196556

    Open questions at the time
    • Molecular mechanism by which PS-1 alters CHT1 affinity unknown
    • Not extended to human disease tissue
  5. 2007 Medium

    Showed nitrosative/oxidative stress (peroxynitrite) suppresses choline uptake by accelerating CHT1 internalization, identifying redox stress as an acute regulator of surface transporter.

    Evidence Choline uptake kinetics, biotinylation, HC-3 binding, and internalization assays in cells expressing FLAG-tagged rat CHT

    PMID:17971421

    Open questions at the time
    • Molecular target of peroxynitrite on CHT not identified
    • Single lab
  6. 2012 Medium

    Identified Nedd4-2 as an E3 ligase that ubiquitinates CHT1 and downregulates its surface level, placing CHT1 turnover under ubiquitin control.

    Evidence Reciprocal Co-IP, Nedd4-2 siRNA knockdown, and choline uptake/surface quantification in HEK293 cells

    PMID:22361880

    Open questions at the time
    • Ubiquitination site on CHT1 not mapped
    • Single lab, heterologous cells
  7. 2014 Medium

    Defined CHT1 topology as a 13-TM SLC5-family transporter and showed a third-TM Ile-to-Val SNP reduces uptake to 50–60%, linking sequence variation to transport capacity.

    Evidence Functional uptake assay of SNP variant, hydropathy/topology analysis, sequence homology

    PMID:25073461

    Open questions at the time
    • Population-level phenotypic consequence of SNP not established
    • Structural basis of the SNP effect not resolved at the time
  8. 2015 Medium

    Established insulin–PI3K/Akt signaling as an acute regulator of CHT1 surface trafficking and demonstrated that chronic insulin (insulin resistance) blunts this control.

    Evidence Choline uptake, phospho-Akt Western blots, PI3K inhibition, and TIRF live-cell imaging of CHT trafficking in differentiated SH-SY5Y cells

    PMID:26161852

    Open questions at the time
    • Direct molecular link between Akt and CHT trafficking machinery undefined
    • Single lab
  9. 2017 Medium

    Connected β-amyloid to cholinergic deficit by showing Aβ reduces surface CHT1 and routes it to lysosomal degradation, with N-terminal Aβ antibody rescue.

    Evidence Uptake assays, biotinylation, endosome/lysosome localization, bafilomycin A1 and neutralizing antibody experiments in SH-SY5Y cells

    PMID:29163036

    Open questions at the time
    • Receptor mediating Aβ effect on CHT1 not identified
    • Bafilomycin rescued surface but not activity, leaving an additional inhibitory mechanism unexplained
  10. 2016 Low

    Suggested transcriptional/translational upregulation of CHT1 by CXCL12 via Akt, coupling chemokine signaling to cholinergic capacity.

    Evidence Western blot, RT-PCR, ACh ELISA, ChAT activity, and pharmacological Akt inhibition in PC12 cells and primary rat neurons

    PMID:27941337

    Open questions at the time
    • Pharmacological inhibition only, no direct CHT1 activity measurement
    • Single lab
    • Direct transcriptional mechanism not established
  11. 2026 High

    Resolved the structural mechanism of choline translocation by cryo-EM of a bacterial ortholog, establishing a conserved LeuT-fold inward-facing pathway validated by CHT1 mutagenesis.

    Evidence Cryo-EM of Na+/choline-bound sfCHT, computational analysis, and transport assays of sfCHT and CHT1 site-directed variants

    PMID:42213839

    Open questions at the time
    • No experimental structure of human CHT1 itself
    • Outward-facing and intermediate states not captured

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the multiple surface-regulatory inputs (Par-4, Nedd4-2 ubiquitination, PI3K/Akt, redox stress, Aβ) are integrated at the endocytic/recycling machinery to set CHT1 density at active terminals remains unresolved.
  • No unified model linking signaling inputs to the dileucine/clathrin endocytic apparatus
  • No human CHT1 structure to map regulatory residues
  • In vivo relevance of individual regulators largely untested

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005215 transporter activity 4 GO:0140104 molecular carrier activity 2
Localization
GO:0005886 plasma membrane 4 GO:0005768 endosome 2 GO:0005764 lysosome 1 GO:0031410 cytoplasmic vesicle 1
Pathway
R-HSA-382551 Transport of small molecules 4 R-HSA-5653656 Vesicle-mediated transport 4 R-HSA-112316 Neuronal System 2
Partners

Evidence

Reading pass · 13 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2006 hCHT (SLC5A7) undergoes rapid endocytosis from the plasma membrane via clathrin-coated pits, dependent on a dileucine-like motif in the carboxyl-terminal region; the intracellular pool resides in endosomal compartments and synaptic vesicles and constitutes a reserve pool for cholinergic neurotransmission. Review synthesizing prior cell-biological experiments including subcellular fractionation, immunolocalization, and mutagenesis of dileucine motif Journal of neurochemistry High 16524384
2006 hCHT (SLC5A7) expressed in Xenopus oocytes mediates Na+- and Cl−-dependent choline transport and choline-induced current; Cl− plays a regulatory (not co-transported) role; external protons reduce hCHT current, transport, and HC-3 binding with pKa ~7.4, indicating proton titration of residues supporting choline binding; HC-3 reveals a constitutive depolarizing leak current; a trafficking mutant L530A/V531A significantly enhances surface expression and current. Voltage-clamp electrophysiology and radiolabeled choline uptake in Xenopus oocytes expressing hCHT; ion substitution; pharmacological inhibition with HC-3; pH titration experiments The Journal of neuroscience High 17005849
2004 Par-4 (prostate apoptosis response-4) physically interacts with CHT1 (SLC5A7) through its C-terminal half and negatively regulates CHT1-mediated choline uptake by reducing CHT1 incorporation into the plasma membrane, without altering CHT1 affinity for choline or HC-3; Par-4·CHT1 complex formation is required for this inhibitory effect. Co-immunoprecipitation, mapping of Par-4 interaction domain, transfection of IMR-32 neural cells, kinetic choline uptake assays, cell-surface biotinylation The Journal of biological chemistry Medium 15090548
2012 The ubiquitin E3 ligase Nedd4-2 interacts with CHT1 (SLC5A7) in HEK293 cells, ubiquitinates it, and reduces cell-surface CHT1 levels by ~40%; siRNA knockdown of endogenous Nedd4-2 enhances CHT1-mediated choline uptake, indicating that Nedd4-2-mediated ubiquitination downregulates surface expression of CHT1. Co-immunoprecipitation in HEK293 cells, siRNA knockdown of Nedd4-2, choline uptake assay, surface expression quantification Biomedical research (Tokyo, Japan) Medium 22361880
2007 Acute exposure to the peroxynitrite generator SIN-1 inhibits CHT (SLC5A7) choline uptake by reducing Vmax without altering Km, accelerates internalization of CHT from the plasma membrane, and decreases cell-surface CHT protein (assessed by HC-3 binding and biotinylation), without affecting CHT recycling back to the surface. Radiolabeled choline uptake kinetics, cell-surface biotinylation, HC-3 binding, and internalization rate assays in cells stably expressing FLAG-tagged rat CHT Molecular pharmacology Medium 17971421
2015 Insulin signaling via the PI3-kinase/PKB(Akt) pathway acutely increases cell-surface levels of CHT (SLC5A7) in depolarized cells and transiently promotes choline uptake; chronic insulin exposure causes insulin resistance, abolishes acute insulin-stimulated phospho-Akt, and reduces choline uptake; PI3-kinase inhibition decreases phospho-Akt, lowers choline uptake, and paradoxically increases CHT surface levels by slowing internalization. Radiolabeled choline uptake assays, Western blotting for phospho-Akt, total internal reflection fluorescence (TIRF) live-cell imaging of CHT trafficking in differentiated SH-SY5Y cells stably expressing CHT, PI3K inhibitor treatments PloS one Medium 26161852
2017 Cell-derived β-amyloid peptides (Aβ) decrease CHT (SLC5A7) choline uptake activity and reduce cell-surface CHT protein levels; Aβ promotes CHT trafficking to lysosomes for degradation; blocking lysosomal degradation with bafilomycin A1 partially rescues surface CHT but not CHT activity; an anti-Aβ antibody directed at the N-terminal amino acids 1–16 of Aβ (but not a mid-region antibody) attenuates both the Aβ-mediated decrease in CHT activity and trafficking. Choline uptake assays, cell-surface biotinylation, subcellular fractionation/immunofluorescence for early endosomes and lysosomes, bafilomycin A1 treatment, neutralizing antibody experiments in SH-SY5Y neural cells Frontiers in molecular neuroscience Medium 29163036
2006 CHT1 (SLC5A7)-mediated choline uptake is significantly reduced in primary cortical neurons from presenilin-1 M146V knock-in mice; kinetic analysis shows reduced HC-3 binding affinity without a change in plasma membrane CHT1 protein levels, indicating the PS-1 mutation impairs CHT1 ligand-binding affinity rather than surface expression. Radiolabeled choline uptake kinetics, HC-3 binding assays, cell-surface biotinylation in primary cortical neurons from PS-1 M146V knock-in mice Brain research Medium 17196556
2016 CXCL12 upregulates CHT1 (SLC5A7) mRNA and protein expression via the Akt signaling pathway; pharmacological inhibition of Akt (GSK690693) abolishes CXCL12-stimulated CHT1 expression and associated increases in choline acetyltransferase activity and ACh production in PC12 cells and primary rat neuronal cultures. Western blotting for p-Akt and CHT1 protein, RT-PCR for CHT1 mRNA, ELISA for ACh, choline acetyltransferase activity assay; pharmacological Akt inhibition Cellular physiology and biochemistry Low 27941337
2026 Cryo-EM structures of a bacterial Na+-dependent choline transporter (sfCHT) with high sequence identity to SLC5A7 (CHT1) reveal a LeuT-fold architecture with Na+ coordination geometry conserved with CHT1; captured in an inward-facing conformation with choline at a site near the cytoplasmic side; computational analysis and mutagenesis of conserved residues in sfCHT and CHT1 variants identify local conformational rearrangements along a defined cytosolic pathway, establishing an evolutionarily conserved translocation mechanism. Cryo-EM structure determination of Na+- and choline-bound sfCHT; computational analysis; transport assays of sfCHT and CHT1 site-directed variants Science advances High 42213839
2003 CHT1 (SLC5A7) protein is localized to the apical membrane of ciliated tracheal epithelial cells (non-neuronal), and is co-localized with choline acetyltransferase at the same site, supporting a role for CHT1-mediated choline uptake in non-neuronal ACh synthesis in airway epithelium. RT-PCR, in situ hybridization, immunohistochemistry with confocal laser scanning and electron microscopy using affinity-purified antisera American journal of respiratory cell and molecular biology Medium 12654636
2003 CHT1 (SLC5A7) is expressed and functionally active in non-neuronal vascular cells (endothelial cells, smooth muscle cells, fibroblasts) of rat and human arteries; high-affinity [3H]-choline uptake in rat aortic segments is hemicholinium-3-sensitive and Na+-dependent, mirroring neuronal high-affinity choline uptake. RT-PCR, Western blot (single 50 kDa band), immunohistochemistry, microimager autoradiography with [3H]-choline and HC-3 competition in aortic segments and primary vascular cell cultures The journal of histochemistry and cytochemistry Medium 14623932
2014 CHT1 (SLC5A7) is an integral membrane protein with 13 transmembrane segments belonging to the Na+/glucose co-transporter family (SLC5); a single nucleotide polymorphism (SNP) causing an Ile-to-Val substitution in the third transmembrane segment reduces choline uptake activity to 50–60% of wild-type, with higher prevalence in Asian populations. Functional characterization of SNP variant by choline uptake assay; hydropathy analysis for topology; sequence homology analysis Journal of biochemistry Medium 25073461

Source papers

Stage 0 corpus · 48 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2006 The "ins" and "outs" of the high-affinity choline transporter CHT1. Journal of neurochemistry 76 16524384
2003 Flagellin from an incompatible strain of Acidovorax avenae mediates H2O2 generation accompanying hypersensitive cell death and expression of PAL, Cht-1, and PBZ1, but not of Lox in rice. Molecular plant-microbe interactions : MPMI 52 12744513
2006 Na+, Cl-, and pH dependence of the human choline transporter (hCHT) in Xenopus oocytes: the proton inactivation hypothesis of hCHT in synaptic vesicles. The Journal of neuroscience : the official journal of the Society for Neuroscience 45 17005849
2014 Molecular properties of the high-affinity choline transporter CHT1. Journal of biochemistry 43 25073461
2003 Expression of the high-affinity choline transporter, CHT1, in the rat trachea. American journal of respiratory cell and molecular biology 43 12654636
2002 Expression of the high-affinity choline transporter, CHT1, in the neuronal and non-neuronal cholinergic system of human and rat skin. The Journal of investigative dermatology 41 12406342
2003 Expression of the high-affinity choline transporter CHT1 in rat and human arteries. The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society 39 14623932
1998 The Ld Cht1 gene encodes the secretory chitinase of the human pathogen Leishmania donovani. Gene 36 9524285
2009 A Phase I Clinical Trial of CHT-25 a 131I-Labeled Chimeric Anti-CD25 Antibody Showing Efficacy in Patients with Refractory Lymphoma. Clinical cancer research : an official journal of the American Association for Cancer Research 31 20008855
2018 Truncating SLC5A7 mutations underlie a spectrum of dominant hereditary motor neuropathies. Neurology. Genetics 23 29582019
2007 Analysis of ocular hypopigmentation in Rab38cht/cht mice. Investigative ophthalmology & visual science 23 17724166
1999 ChT1, an Ig superfamily molecule required for T cell differentiation. Journal of immunology (Baltimore, Md. : 1950) 23 10229800
2012 Choline transporter CHT regulation and function in cholinergic neurons. Central nervous system agents in medicinal chemistry 21 22483273
2024 CircFBXW4 Suppresses Colorectal Cancer Progression by Regulating the MiR-338-5p/SLC5A7 Axis. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 19 38461489
2018 A new severe mutation in the SLC5A7 gene related to congenital myasthenic syndrome type 20. Neuromuscular disorders : NMD 19 30172469
2004 Par-4 inhibits choline uptake by interacting with CHT1 and reducing its incorporation on the plasma membrane. The Journal of biological chemistry 19 15090548
1996 Molecular cloning of a third chitinase gene (CHT1) from Candida albicans. Yeast (Chichester, England) 19 8740424
2003 Expression of the high-affinity choline transporter CHT1 in epithelia. Life sciences 16 12628461
2015 The International Atomic Energy Agency (IAEA) randomized trial of palliative treatment of incurable locally advanced non small cell lung cancer (NSCLC) using radiotherapy (RT) and chemotherapy (CHT) in limited resource setting. Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology 15 26163093
2011 Polymorphic variation in choline transporter gene (CHT1) is associated with early, subclinical measures of carotid atherosclerosis in humans. The international journal of cardiovascular imaging 15 21337021
2020 Modulation of sodium-coupled choline transporter CHT function in health and disease. Neurochemistry international 14 32768485
2019 The novel p.Ser263Phe mutation in the human high-affinity choline transporter 1 (CHT1/SLC5A7) causes a lethal form of fetal akinesia syndrome. Human mutation 14 31299140
2013 Protein τ-mediated effects on rat hippocampal choline transporters CHT1 and τ-amyloid β interactions. Neurochemical research 14 23824558
2012 The high-affinity choline transporter CHT1 is regulated by the ubiquitin ligase Nedd4-2. Biomedical research (Tokyo, Japan) 14 22361880
2006 Reduction in CHT1-mediated choline uptake in primary neurons from presenilin-1 M146V mutant knock-in mice. Brain research 14 17196556
2021 Choline-induced SLC5A7 impairs colorectal cancer growth by stabilizing p53 protein. Cancer letters 12 34562520
2015 Insulin Regulates the Activity of the High-Affinity Choline Transporter CHT. PloS one 12 26161852
2007 Activity and subcellular trafficking of the sodium-coupled choline transporter CHT is regulated acutely by peroxynitrite. Molecular pharmacology 12 17971421
2005 Differential expression and regulation of the high-affinity choline transporter CHT1 and choline acetyltransferase in neurons of superior cervical ganglia. Molecular and cellular neurosciences 12 15691711
2023 Choline suppresses hepatocellular carcinoma progression by attenuating AMPK/mTOR-mediated autophagy via choline transporter SLC5A7 activation. Hepatobiliary surgery and nutrition 11 38911213
2020 Chitosan/Polycyclodextrin (CHT/PCD)-Based Sponges Delivering VEGF to Enhance Angiogenesis for Bone Regeneration. Pharmaceutics 11 32825081
2017 Amino-Terminal β-Amyloid Antibody Blocks β-Amyloid-Mediated Inhibition of the High-Affinity Choline Transporter CHT. Frontiers in molecular neuroscience 11 29163036
2018 Polymorphic variation in the SLC5A7 gene influences infant autonomic reactivity and self-regulation: A neurobiological model for ANS stress responsivity and infant temperament. Psychoneuroendocrinology 9 30005279
2022 [99mTc]Tc-DTPA-Bis(cholineethylamine) as an Oncologic Tracer for the Detection of Choline Transporter (ChT) and Choline Kinase (ChK) Expression in Cancer. ACS omega 7 35474820
2019 Repetitive mild concussion in subjects with a vulnerable cholinergic system: Lasting cholinergic-attentional impairments in CHT+/- mice. Behavioral neuroscience 6 30896190
2016 CXCL12 Regulates the Cholinergic Locus and CHT1 Through Akt Signaling Pathway. Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 6 27941337
2022 Targeted demethylation of the SLC5A7 promotor inhibits colorectal cancer progression. Clinical epigenetics 5 35858918
2017 Hemicholinium-3 sensitive choline transport in human T lymphocytes: Evidence for use as a proxy for brain choline transporter (CHT) capacity. Neurochemistry international 5 28577989
2004 Changes of high-affinity choline transporter CHT1 mRNA expression during degeneration and regeneration of hypoglossal nerves in mice. Neuroscience letters 4 15245786
2025 Smart Therapeutic Nanoplatform Based on Ti3C2 MXenes for Tumor-Targeted PTT/PDT/CHT at Low Temperatures. Molecular pharmaceutics 3 40665615
2024 Preparation and characterization of AChE immobilized magnetic bio-nanocomposites (Fe3O4@Cht/Au) for pesticide detection. Journal of environmental science and health. Part. B, Pesticides, food contaminants, and agricultural wastes 2 38764244
2025 Mesoporous Silica-Loaded PCL-CHT Hybrid Membranes for Skin Regeneration. ACS applied materials & interfaces 1 40785071
2024 Congenital myasthenic syndrome secondary to pathogenic variants in the SLC5A7 gene: report of two cases. BMC medical genomics 1 39135055
2023 Efficacy of Residual Site Radiation Therapy (ISRT) in Patients with Primary Mediastinal Lymphoma with Deauville Score 4 Following R-CHT: Results of a Retrospective Mono Institutional Study. Journal of clinical medicine 1 37297971
2018 Particle bombardment-mediated co-transformation of the Cht-2 gene in wheat and the associated changes in defense mechanisms in transgenic plants infected with Fusarium graminearum. Data in brief 1 30456222
2017 Lack of association between SLC5A7 polymorphisms and Tourette syndrome in a Chinese Han population. Neuroscience letters 1 28830823
2026 Structural insights into a conserved mechanism of choline translocation through CHT. Science advances 0 42213839
2024 Genetic analysis of a family affected by congenital myasthenic syndrome due to a Novel mutation in the SLC5A7 gene. BMC neurology 0 38886633

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