| 1996 |
SIX4 (AREC3) binds specifically to the ARE (Na,K-ATPase alpha1 subunit gene regulatory element) DNA sequence via its homeodomain, and contains a transactivation domain in its C-terminal region identified by GAL4-fusion reporter assays. The protein localizes to both nucleus and cytoplasm of myoblast C2C12 cells and is upregulated during muscle differentiation. |
DNA binding assays, GAL4 fusion transactivation reporter assays, immunohistochemistry, Western blot |
Nucleic acids research |
High |
8628654
|
| 2004 |
SIX4 is the Transcriptional Regulatory Element X (Trex)-binding factor (TrexBF) in the Muscle Creatine Kinase (MCK) enhancer in mouse skeletal myocytes and embryonic chick skeletal/cardiac muscle. SIX4 transactivates the MCK enhancer and muscle-specific regulatory regions of Aldolase A and Cardiac troponin C via Trex/MEF3 sites. |
Quantitative proteomics with oligonucleotide-coupled magnetic bead enrichment, gel shift assays, Six-specific antisera, cotransfection transactivation assays |
Molecular and cellular biology |
High |
14966291
|
| 2005 |
Six1 and Six4 are required together for Pax3 gene expression, which controls myogenic cell delamination and migration from the somite into limb buds. In the myotome, absence of Six1 and Six4 impairs expression of myogenic regulatory factors myogenin, Myod1, and Mrf4, while Myf5 becomes restricted to the caudal somite region. |
Six1/Six4 double knockout mice, in situ hybridization, immunostaining, apoptosis assays |
Development (Cambridge, England) |
High |
15788460
|
| 2005 |
Six1 and Six4 differentially regulate common target genes due to distinct DNA-binding specificities; the Slc12a2 (sodium-potassium-chloride cotransporter 1) promoter contains multiple Six1-binding sites and one common Six1/Six4 binding site, and Slc12a2 expression is reduced in dorsal root ganglia of Six1/Six4 double-knockout mice. |
Gel-retardation (EMSA) assays, in situ hybridization in knockout mice |
The FEBS journal |
High |
15955062
|
| 2007 |
Six1 and Six4 cooperate in the metanephric mesenchyme to regulate Gdnf expression; Six1/Six4 double-deficient mice fail to express Pax2, Pax8, or Gdnf in metanephric mesenchyme, resulting in absence of ureteric bud and kidney/ureter agenesis. Six4 alone cooperates with Six1 in the metanephros but not the mesonephros. |
Six1/Six4 double knockout mice, immunostaining, in situ hybridization |
Mechanisms of development |
High |
17300925
|
| 2008 |
Six1 and Six4 function synergistically at the top of the transcriptional hierarchy controlling olfactory placode formation and neuronal development; embryos lacking both Six1 and Six4 fail to form the olfactory placode, acting through Fgf and Bmp signaling pathways. |
Six1/Six4 double knockout mice, gene expression analysis, in situ hybridization, cell proliferation and apoptosis assays |
Developmental biology |
High |
19027001
|
| 2013 |
Six1 and Six4 are required together for male sex determination by activating Sry expression; they regulate two downstream targets: Fog2 (Zfpm2), which induces Sry expression for male sex determination, and Nr5a1 (Ad4BP/Sf1), which controls gonadal precursor formation and gonadal size. |
Six1/Six4 double knockout mice, Sry transgene rescue, gene expression analysis |
Developmental cell |
High |
23987514
|
| 2015 |
Six4 cooperates genome-wide with MyoD and the histone H3K27me3 demethylase Utx during adult skeletal myogenesis; Six4 binding at regulatory regions is associated with removal of repressive chromatin marks, and Six4 in vivo RNAi reveals an uncompensated function during muscle regeneration. |
ChIP-seq, genome-wide binding analysis, RNA interference in vivo, chromatin mark analysis |
FASEB journal |
High |
26229056
|
| 2016 |
Six1 or Six4 are required for MyoD-mediated reprogramming of mouse embryonic fibroblasts to myogenic fate; Six4 and MyoD binding sites co-localize genome-wide, and their synergistic transcriptional activation involves feedforward recruitment together with partner transcription factors including Mef2, Pbx-Meis, and EBF. |
Microarray expression profiling, MyoD ChIP-seq, genome-wide MEF3 binding site analysis, luciferase reporter assays, MEF reprogramming assay |
Nucleic acids research |
High |
27302134
|
| 2019 |
Pax3 cooperates with Six4 (and Tead2) to remodel chromatin at target loci during skeletal myogenic lineage specification; Pax3 binding increases chromatin accessibility at elements that are also bound by Six4, linking Six4 to Hedgehog, Notch, and BMP signaling pathway activation in myogenesis. |
ATAC-seq (chromatin accessibility), ChIP-seq, transcriptome profiling of Pax3-null embryos and Pax3-induced ES cells, mouse and human systems |
PLoS biology |
High |
30807574
|
| 2020 |
SIX4 promotes hepatocellular carcinoma metastasis by directly binding the promoters of YAP1 and MET proto-oncogene to transactivate their expression. HGF upregulates SIX4 via ERK/NF-κB pathway, forming a positive feedback loop. Knockdown of YAP1 and c-MET inhibits SIX4-mediated HCC metastasis. |
Promoter binding assays, gene knockdown/overexpression, invasion/migration assays, in vivo metastasis models, ChIP |
Oncogene |
Medium |
33046796
|
| 2020 |
SIX4 promotes breast cancer metastasis by directly interacting with STAT3 protein and promoting phosphorylated STAT3 nuclear translocation, thereby inducing Snai1 expression and EMT program activation. |
Co-immunoprecipitation, knockdown/overexpression, migration/invasion assays, in vivo lung metastasis model |
American journal of cancer research |
Medium |
32064163
|
| 2019 |
SIX4 upregulates HIF-1α expression through Akt activation, which in turn increases VEGF-A expression to promote tumor angiogenesis in colorectal cancer. |
Gene overexpression/knockdown, in vitro tube formation assays, in vivo tumor growth assays, Western blot for pathway components |
Experimental cell research |
Low |
31301290
|
| 2023 |
SIX4 is a principal regulator of STING expression in colon cancer cells; SIX4 knockout decreases STING mRNA and protein levels and attenuates downstream cGAS/STING signaling, while ectopic SIX4 expression increases STING expression and enhances STING agonist-induced signaling. Decreased SIX4 reduces CD8+ T cell tumor infiltration and anti-PD-1 efficacy in vivo. |
CRISPR knockout, ectopic overexpression, STING pathway signaling assays, in vivo immune checkpoint blockade experiments |
Cancer research communications |
Medium |
37888903
|
| 2023 |
EYA3 isoforms interact with SIX4 (and ZBTB1) as major transcription factor partners during myogenesis, with alternative splicing of Eya3 exon 7 (regulated by RBFOX2) determining which transcription factor complex forms to dictate gene expression during muscle cell differentiation. |
Mass spectrometry-based proteomics, genome-wide transcriptomics, RNA immunoprecipitation, myoblast differentiation assays |
iScience |
Medium |
38026174
|
| 2021 |
In Drosophila type II neuroblast lineages, Six4 prevents dedifferentiation of immature intermediate neural progenitors (imINPs) by forming a trimeric complex with Earmuff and PntP1, thereby inhibiting PntP1 expression and activity and preventing premature differentiation via suppression of ectopic Prospero expression. |
Drosophila genetics (loss-of-function), epistasis analysis, immunostaining, clonal analysis |
PLoS genetics |
Medium |
33556050
|
| 2007 |
Drosophila Six4 is required in somatic gonadal precursors (SGPs) for expression of Hmgcr (HMG-CoA reductase), which is necessary for attraction of primordial germ cells to SGPs; Six4 also controls msSGP migration via a distinct Hmgcr-independent pathway, and is required for coalescence of SGP clusters. |
Live time-lapse fluorescence imaging, Drosophila genetics (loss-of-function), in situ hybridization |
BMC developmental biology |
Medium |
17517128
|
| 2018 |
MyoD regulates bovine SIX4 transcription by binding to MyoD recognition sites and E-box elements in the core promoter region (-522/-193), acting through both direct and indirect mechanisms at these sites. |
5' deletion luciferase reporter assays, EMSA, ChIP assay, site-directed mutagenesis, siRNA interference |
Biochemical and biophysical research communications |
Medium |
29307818
|
| 1999 |
Human SIX4 gene maps to chromosome 14q23; the gene structure including the 5' upstream region is well conserved between human and mouse. |
Genomic cloning, chromosome mapping |
Cytogenetics and cell genetics |
Medium |
10640827
|
| 2024 |
SIX4, transcriptionally activated by the IL-6/STAT3 signaling pathway, binds to c-Jun to transcribe IL-6, forming a positive IL-6/STAT3/SIX4/c-Jun feedback loop that drives intestinal inflammation. Additionally, SIX4 directly binds the DeltaNp63 promoter (not wild-type p63) to induce tumor stemness signals in colorectal cancer. |
ChIP assay, promoter binding assays, in vivo DSS/AOM mouse models, siRNA knockdown, gene expression analysis |
International journal of biological sciences |
Medium |
39309424
|
| 2022 |
FOXA1 transcriptionally regulates SIX4 expression in cervical cancer; ChIP and dual-luciferase assays validated FOXA1 as a direct upstream transcriptional regulator of SIX4, and SIX4 in turn activates the PI3K/AKT signaling pathway. |
ChIP assay, dual-luciferase reporter assay, gene knockdown/overexpression, PI3K/AKT pathway analysis |
Analytical cellular pathology (Amsterdam) |
Medium |
35498155
|
| 2023 |
MKRN2 interacts with STAT1 (demonstrated by Co-IP) and regulates SIX4 expression via EBF2 transcription factor in mouse testis; loss of Mkrn2 decreases SIX4 expression and causes male infertility. |
Mkrn2 knockout mice, Co-IP assay, Western blot, gene expression analysis |
Frontiers in endocrinology |
Low |
36967804
|
| 2020 |
SIX4 PAX7+ progenitor cells in Six1/Six4 double knockout mice are fewer in satellite cell position at E18, but retained PAX7+ cells can still divide and contribute to muscle growth; transplantation reveals mutant stem cells form hypotrophic, non-innervated myofibers but retain self-renewal capacity. |
Six1/Six4 double knockout mice, immunostaining, transcriptome analysis, satellite cell transplantation assay |
Development (Cambridge, England) |
Medium |
32591430
|
| 2024 |
SIX1, SIX2, and SIX4 (with SIX1 and SIX2 most critical) are necessary for induction of DUX4 transcription in differentiating FSHD myotubes; DUX4 in turn downregulates SIX RNA levels, suggesting a negative feedback loop. |
siRNA knockdown in FSHD myotubes, gene expression analysis |
bioRxivpreprint |
Low |
|
| 2025 |
SIX4 is a key transcription factor mediating CDK8 inhibitor-induced transcriptional activation of myogenic differentiation genes in alveolar rhabdomyosarcoma; identified through genome-scale CRISPR-Cas9 drug modifier screen. |
Genome-scale CRISPR-Cas9 drug modifier screen, CDK8 knockout/inhibition, transcriptional analysis |
bioRxivpreprint |
Low |
|