Affinage

SIRPB1

Signal-regulatory protein beta-1 isoform 3 · UniProt Q5TFQ8

Length
398 aa
Mass
43.4 kDa
Annotated
2026-06-10
34 papers in source corpus 9 papers cited in narrative 9 extracted findings
Cross-family judge vs UniProt: tie faithfulness: 4/5 claims corpus-supported (80%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SIRPB1 is an activating immunoreceptor of the signal-regulatory protein family expressed on myeloid cells that lacks cytoplasmic ITIM motifs and instead transduces signals by associating with the adaptor DAP12, with which it must complex for efficient cell-surface expression (PMID:10604985). Receptor engagement triggers tyrosine phosphorylation and SYK activation, driving downstream calcium, MAPK, and NF-κB signaling and the production of pro-inflammatory cytokines, as shown by CRISPR knockout, ectopic re-expression, and SYK-inhibitor rescue in myeloid cells where SIRPB1 controls IL-1RA, CCL2, and IL-8 output (PMID:10604985, PMID:38594692). A rare gain-of-function frameshift variant amplifies this axis, elevating SIRPB1 expression and inducing phosphorylation of Syk, Akt, and Jak2 with DAP12 and NF-κB activation and IL-1/TNF-α/IL-6 synthesis (PMID:37323681). Beyond its myeloid signaling role, SIRPB1 promotes tumorigenicity: it drives prostate cancer proliferation and invasion through Akt activation (PMID:31905248) and melanoma growth through the SOCS1/STAT3 axis (PMID:41467177), where its transcription is controlled by USF2 binding the SIRPB1 promoter (PMID:41467177). At the locus level, a common intronic copy-number variant carries functional insulator elements and enhancer activity that modulate SIRPB1 expression and 3D chromatin architecture (PMID:29518122, PMID:25039969).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2000 High

    Established how an ITIM-lacking SIRP family member signals: SIRPB1 partners with DAP12 to become an activating rather than inhibitory receptor, resolving how it couples to downstream activation.

    Evidence SIRP-specific mAb co-immunoprecipitation, surface-expression assays, and phosphorylation/MAPK readouts in monocytes and dendritic cells

    PMID:10604985

    Open questions at the time
    • Endogenous ligand of SIRPB1 not identified
    • Stoichiometry and structural basis of the SIRPB1/DAP12 complex not resolved
  2. 2013 Low

    Placed SIRPB1 within DAP12-dependent myeloid autoimmune responses in vivo, though only by inference from DAP12 loss rather than direct manipulation of SIRPB1.

    Evidence qRT-PCR of DAP12/SIRPb1 in mouse eye, DAP12 knockout mice, experimental autoimmune uveitis

    PMID:23906311

    Open questions at the time
    • No SIRPB1-specific gain/loss-of-function; role inferred from DAP12 context
    • Effect direction confounded by microbial environment
  3. 2014 Medium

    Identified a cis-regulatory mechanism controlling SIRPB1 dosage: an intronic CNV bearing insulator elements sets steady-state SIRPB1 mRNA levels.

    Evidence Genome-wide CNV and eQTL analysis with functional insulator assays in zebrafish embryos

    PMID:25039969

    Open questions at the time
    • Insulator-binding factors not identified
    • Cell-type specificity of the regulatory effect unresolved
  4. 2018 Medium

    Extended the regulatory model to 3D chromatin architecture, showing the intronic CNV reshapes locus topology and that a 3' enhancer has neural activity.

    Evidence 4C-seq from SIRPB1 promoter, transgenic zebrafish enhancer assay, population CNV analysis

    PMID:29518122

    Open questions at the time
    • Functional consequence on CNS SIRPB1 expression not directly measured in humans
    • Link between chromatin change and phenotype unestablished
  5. 2020 High

    Revealed an oncogenic function distinct from immune signaling: SIRPB1 drives prostate cancer proliferation and invasion via Akt.

    Evidence siRNA knockdown, overexpression, colony/migration assays, xenografts, and Akt-inhibitor rescue in PC3 and C4-2 cells

    PMID:31905248

    Open questions at the time
    • Mechanism linking SIRPB1 to Akt activation not defined
    • Whether DAP12/SYK are required for the cancer-cell effect unknown
  6. 2023 Medium

    Provided human genetic and functional evidence that elevated SIRPB1 activity is pathogenic, via a gain-of-function frameshift variant amplifying Syk/Akt/Jak2 and NF-κB-driven cytokine output.

    Evidence Family-based whole-genome sequencing with replication cohort and macrophage phosphorylation/NF-κB/cytokine assays

    PMID:37323681

    Open questions at the time
    • Functional findings from a single lab, not independently replicated
    • Specific disease causality of the variant not firmly established
  7. 2024 High

    Defined SYK as the proximal kinase relaying SIRPB1 signaling to calcium, MAPK, and NF-κB and to specific inflammatory cytokines in a tumor-microenvironment context.

    Evidence CRISPR/Cas9 KO and ectopic re-expression in THP-1, SYK inhibitor (GS9973), macrophage-glioma co-culture, cytokine and phosphorylation assays

    PMID:38594692

    Open questions at the time
    • Trigger of SIRPB1 activation in the co-culture not identified
    • Contribution to glioma progression in vivo not tested
  8. 2025 Medium

    Linked SIRPB1 to a second tumor-promoting axis (SOCS1/STAT3) and identified USF2 as its transcriptional activator, connecting expression control to oncogenic output.

    Evidence Knockdown/overexpression in melanoma cells, xenografts, STAT3-agonist rescue, dual-luciferase and ChIP for USF2

    PMID:41467177

    Open questions at the time
    • How SIRPB1 modulates SOCS1 mechanistically unknown
    • Single-lab findings not independently replicated

Open questions

Synthesis pass · forward-looking unresolved questions
  • The physiological extracellular ligand of SIRPB1 and how its myeloid DAP12/SYK signaling is reconciled with its cell-intrinsic oncogenic Akt and SOCS1/STAT3 functions remain unresolved.
  • No endogenous ligand identified
  • No structural model of receptor/adaptor complex
  • Unclear whether cancer-cell and myeloid signaling use the same DAP12/SYK module

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060089 molecular transducer activity 2 GO:0098772 molecular function regulator activity 1
Localization
GO:0005886 plasma membrane 1
Pathway
R-HSA-162582 Signal Transduction 4 R-HSA-168256 Immune System 3
Partners
Complex memberships
SIRPB1/DAP12 receptor complex

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2000 SIRPB1 (signal-regulatory protein beta 1) associates with the DAP12 signal transduction molecule in myeloid cells; this complex formation is required for efficient cell-surface expression of SIRPB1. Stimulation of the SIRPB1/DAP12 complex induced tyrosine phosphorylation, MAP kinase activation, and cellular activation. SIRPB1 lacks cytoplasmic ITIM motifs (unlike inhibitory SIRPs) and thus signals through DAP12 rather than recruiting SHP-1/SHP-2. SIRP-specific mAb co-immunoprecipitation, cell-surface expression assays, tyrosine phosphorylation and MAPK activation assays in monocytes and dendritic cells Journal of immunology (Baltimore, Md. : 1950) High 10604985
2020 SIRPB1 promotes prostate cancer cell proliferation and invasion via activation of Akt phosphorylation. Knockdown of SIRPB1 suppressed colony formation, cell mobility, induced G0/G1 cell cycle arrest and enhanced apoptosis; overexpression enhanced migration, invasion, colony formation, cell cycle progression, and xenograft tumor take rate. Akt inhibition abolished SIRPB1-stimulated cell proliferation, placing Akt downstream of SIRPB1. siRNA knockdown, overexpression in PC3 and C4-2 prostate cancer cells, colony formation assay, wound-healing/transwell assays, cell cycle analysis, xenograft tumor model, Western blot for Akt phosphorylation, Akt inhibitor rescue experiment The Prostate High 31905248
2024 SIRPB1 activation by antibody in myeloid-derived cells leads to SYK phosphorylation and subsequent activation of calcium, MAPK, and NF-κB signaling pathways. In a macrophage-glioma co-culture model, SIRPB1 knockout in macrophages decreased IL-1RA, CCL2, and IL-8; ectopic SIRPB1 re-expression restored these cytokines; and SYK inhibitor (GS9973) reduced them again, demonstrating SIRPB1 signals through SYK to regulate inflammatory cytokine production. CRISPR/Cas9 knockout of SIRPB1 in THP-1 cells, antibody-mediated activation, SYK inhibitor (GS9973) treatment, co-culture with glioma cells, cytokine measurement, phosphorylation assays Journal of translational medicine High 38594692
2023 A rare gain-of-function frameshift variant (c.1143_1144insG; p.Leu381_Leu382fs) in SIRPB1 induces tyrosine phosphorylation of Syk, Akt, and Jak2, elevates SIRPB1 mRNA and protein expression, activates DAP12, activates NF-κB in macrophages, and promotes synthesis of pro-inflammatory cytokines IL-1, TNF-α, and IL-6. Family-based whole-genome sequencing, replication cohort, Western blot for Syk/Akt/Jak2 phosphorylation, NF-κB activation assay, cytokine measurement in macrophages expressing the frameshift variant Frontiers in genetics Medium 37323681
2025 SIRPB1 promotes cutaneous malignant melanoma tumorigenicity through the SOCS1/STAT3 signaling axis. SIRPB1 knockdown inhibited proliferation, migration, and invasion of melanoma cells in vitro and in vivo, and significantly upregulated SOCS1 expression, which negatively regulated STAT3. A STAT3 agonist rescued the tumor-inhibitory effects of SIRPB1 knockdown. SIRPB1 is transcriptionally regulated by the transcription factor USF2, which binds the SIRPB1 promoter. siRNA/shRNA knockdown and overexpression in melanoma cell lines, in vivo xenograft, Western blot and qPCR for SOCS1/STAT3, STAT3 agonist rescue, dual-luciferase reporter and ChIP assay for USF2 binding to SIRPB1 promoter iScience Medium 41467177
2017 Polyphenolic fractions from dried plum downregulate Sirpb1 mRNA expression in primary bone marrow cells during osteoclast differentiation, consistent with Sirpb1 functioning as a costimulatory receptor involved in calcium signaling required for Nfatc1 auto-amplification and osteoclast differentiation. Under TNF-α inflammatory conditions, only Sirpb1 (not Oscar or Trem2) was selectively downregulated by these fractions. Primary mouse bone marrow cultures, quantitative RT-PCR for Sirpb1, Oscar, Trem2 mRNA; osteoclast differentiation assays; MAPK phosphorylation (ERK, p38) assays; treatment with polyphenolic fractions ± TNF-α Current developments in nutrition Low 29955675
2018 A common copy-number variant (CNV) within SIRPB1 intron 1 affects 3D chromatin architecture at the locus: Circular Chromosome Conformation Capture (4C-seq) from the SIRPB1 promoter showed important 3D modifications depending on presence/absence of the duplication. A 3′ enhancer showed neural activity in transgenic zebrafish models, suggesting the CNV may compromise SIRPB1 expression in the central nervous system. 4C-seq from SIRPB1 promoter, transgenic zebrafish enhancer assay, population-level CNV distribution analysis across 42 populations PloS one Medium 29518122
2014 A common CNV in SIRPB1 intron 1 contains two functional insulator elements whose presence/absence modulates SIRPB1 expression levels. Expression QTL analysis showed higher SIRPB1 mRNA levels associated with the haplotype containing the deleted allele. Functional insulator activity was confirmed in zebrafish embryo assays. Genome-wide CNV analysis, expression QTL analysis, functional insulator assays in zebrafish embryos Genes, brain, and behavior Medium 25039969
2013 In normal mouse eyes, DAP12 and multiple DAP12-coupled receptors including SIRPb1 are expressed. Loss of DAP12 in mice alters the capacity to mount immunopathogenic responses (experimental autoimmune uveitis), demonstrating that the DAP12/SIRPb1 pathway participates in myeloid-cell-mediated autoimmune processes; however, the direction of effect was modulated by environmental (microbial) factors in the housing facility. Quantitative RT-PCR for DAP12 and SIRPb1 in mouse eye tissue, DAP12 knockout mouse model, experimental autoimmune uveitis (EAU) induction, in vitro lymphocyte stimulation with cytokine profiling Immunology Low 23906311

Source papers

Stage 0 corpus · 34 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2000 Cutting edge: signal-regulatory protein beta 1 is a DAP12-associated activating receptor expressed in myeloid cells. Journal of immunology (Baltimore, Md. : 1950) 130 10604985
2019 Mesenchymal Stem/Stromal Cell Engulfment Reveals Metastatic Advantage in Breast Cancer. Cell reports 75 31242423
2022 Genome-Wide Placental Gene Methylations in Gestational Diabetes Mellitus, Fetal Growth and Metabolic Health Biomarkers in Cord Blood. Frontiers in endocrinology 32 35721735
2013 Genome wide analysis of chromosomal alterations in oral squamous cell carcinomas revealed over expression of MGAM and ADAM9. PloS one 28 23405089
2012 High-resolution genomic profiling reveals clonal evolution and competition in gastrointestinal marginal zone B-cell lymphoma and its large cell variant. International journal of cancer 23 22890838
2013 Analysis of schizophrenia and hepatocellular carcinoma genetic network with corresponding modularity and pathways: novel insights to the immune system. BMC genomics 20 24564241
2019 Stem Cell-Derived Neurons as Cellular Models of Sporadic Alzheimer's Disease. Journal of Alzheimer's disease : JAD 17 30689579
2016 Read-through transcripts in normal human lung parenchyma are down-regulated in lung adenocarcinoma. Oncotarget 16 27058892
2017 Osteoclast Differentiation is Downregulated by Select Polyphenolic Fractions from Dried Plum via Suppression of MAPKs and Nfatc1 in Mouse C57BL/6 Primary Bone Marrow Cells. Current developments in nutrition 15 29955675
2021 The Immunoregulatory Role of the Signal Regulatory Protein Family and CD47 Signaling Pathway in Type 1 Diabetes. Frontiers in immunology 14 34603322
2018 Copy Number Variation of Immune-Related Genes and Their Association with Iodine in Adults with Autoimmune Thyroid Diseases. International journal of endocrinology 14 29713342
2023 Longitudinal APOE4- and amyloid-dependent changes in the blood transcriptome in cognitively intact older adults. Alzheimer's research & therapy 13 37438770
2020 SIRPB1 promotes prostate cancer cell proliferation via Akt activation. The Prostate 12 31905248
2014 SIRPB1 copy-number polymorphism as candidate quantitative trait locus for impulsive-disinhibited personality. Genes, brain, and behavior 10 25039969
2013 Environmental factors determine DAP12 deficiency to either enhance or suppress immunopathogenic processes. Immunology 10 23906311
2024 Genome-wide survey reveals the genetic background of Xinjiang Brown cattle in China. Frontiers in genetics 9 38283146
2024 SIRPB1 regulates inflammatory factor expression in the glioma microenvironment via SYK: functional and bioinformatics insights. Journal of translational medicine 8 38594692
2022 A Cross-Tissue Transcriptome-Wide Association Study Identifies Novel Susceptibility Genes for Juvenile Idiopathic Arthritis in Asia and Europe. Frontiers in immunology 7 35967305
2025 Molecular and Genetic Pathogenesis of Oral Cancer: A Basis for Customized Diagnosis and Treatment. Biology 6 40723400
2024 FOSL1-mediated LINC01566 negatively regulates CD4+ T-cell activation in myasthenia gravis. Journal of neuroinflammation 6 39113081
2019 Deletions in Genes Participating in Innate Immune Response Modify the Clinical Course of Andes Orthohantavirus Infection. Viruses 6 31349540
2025 Retrotrans-genomics identifies aberrant THE1B endogenous retrovirus fusion transcripts in the pathogenesis of sarcoidosis. Nature communications 5 39920152
2015 Nature and nurture: a case of transcending haematological pre-malignancies in a pair of monozygotic twins adding possible clues on the pathogenesis of B-cell proliferations. British journal of haematology 5 25752595
2011 SNPs array karyotyping reveals a novel recurrent 20p13 amplification in primary myelofibrosis. PloS one 5 22110671
2018 A common copy-number variant within SIRPB1 correlates with human Out-of-Africa migration after genetic drift correction. PloS one 4 29518122
2024 Knocking out FAM20C in pre-osteoblasts leads to up-regulation of osteoclast differentiation to affect long bone development. Gene 3 38552750
2023 A frameshift variant in the SIRPB1 gene confers susceptibility to Crohn's disease in a Chinese population. Frontiers in genetics 3 37323681
2024 In silico and functional analysis identifies key gene networks and novel gene candidates in obesity-linked human visceral fat. Obesity (Silver Spring, Md.) 2 39497634
2015 Genotyping of common SIRPB1 copy number variant using Paralogue Ratio Test coupled to MALDI-MS quantification. Molecular and cellular probes 2 26239731
2026 Genetic variations associated with immediate hypersensitivity reactions to iodinated contrast media: A whole exome sequencing study. PloS one 1 41886420
2025 A prospective study on the regulation of osteoarthritis risk through inflammatory pathways in clonal hematopoiesis. GeroScience 1 40830311
2025 Multi-Omics Mendelian Randomization Identifies Therapeutic Targets for Sjögren's Disease with Clinical and Bayesian Validation. Journal of inflammation research 0 41333034
2025 SIRPB1 is transcriptionally regulated by USF2 and promotes cutaneous malignant melanoma tumorigenicity through SOCS1/STAT3 signaling. iScience 0 41467177
2020 Straightforward protocol for allele-specific chromatin conformation capture. Gene 0 32998049

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