| 1998 |
SURF1 encodes a factor involved in the biogenesis of cytochrome c oxidase (COX); loss-of-function mutations in SURF1 cause COX deficiency, mapping the gene defect to chromosome 9q34 by microcell-mediated chromosome transfer and complementation of respiratory chain deficiency in patient fibroblasts. |
Microcell-mediated chromosome transfer, complementation assay in patient fibroblasts, DNA sequence analysis |
Nature genetics |
High |
9837813 9843204
|
| 1997 |
SHY1 (yeast homolog of SURF1) encodes a mitochondrial inner membrane protein required for respiration and cytochrome c oxidase activity in S. cerevisiae; antibody localization placed Shy1p in the inner mitochondrial membrane. |
Yeast genetics (pet mutant complementation), antibody-based subcellular fractionation/localization, deletion analysis |
The Journal of biological chemistry |
High |
9162072
|
| 1999 |
Surf-1 protein (Surf-1p) is imported into mitochondria as a precursor, processed by cleavage of an ~40 amino acid N-terminal leader peptide to yield a mature 30 kDa product; it is localized to and tightly bound to the mitochondrial inner membrane. Loss-of-function mutations result in absence of protein and block COX assembly at an early step, most likely before incorporation of subunit II into the nascent Cox1-containing intermediate. |
Western blot with anti-HA antibodies, mitochondrial import assay, alkaline carbonate extraction, proteinase K protection assay, blue native 2D gel electrophoresis |
Human molecular genetics |
High |
10556302
|
| 1999 |
Human Surf-1p is an integral inner mitochondrial membrane protein with an essential role in COX assembly; both transmembrane domains are required for function. FLAG-tagged hSurf1 targeted to mitochondria is imported and processed in a membrane-potential-dependent manner. Deletion of the N-terminal or C-terminal transmembrane domain, or co-expression of the two domains as independent entities, fails to rescue COX activity in patient cells. |
Epitope-tagged protein expression in COS7 cells, mitochondrial import assay, proteinase K digestion of mitoplasts, alkaline carbonate extraction, complementation assay in patient fibroblasts |
Human molecular genetics |
High |
10556303
|
| 2003 |
In SURF1-deficient patient fibroblasts, COX assembly stalls at the same stage as in SCO1-deficient cells — at a subassembly containing MTCO1, COX4, and COX5A — pointing to a role for SURF1 in promoting the association of MTCO2 with the MTCO1.COX4.COX5A subassembly. |
Immunoblot analysis of native gels (BN-PAGE), subassembly detection in patient fibroblasts from COX10, SCO1, and SURF1 mutant lines |
The Journal of biological chemistry |
High |
14607829
|
| 2007 |
Yeast Shy1 (SURF1 ortholog) promotes complex IV biogenesis by associating with multiple protein modules: it interacts with translational regulators Mss51 and Cox14 (which regulate Cox1 synthesis), and also associates with complex IV subassembly intermediates. Formation of these subcomplexes depends on a novel assembly factor Coa1. Shy1 also links partially assembled complex IV to the bc1 complex to form transitional supercomplexes. This places Shy1 at the nexus of Cox1 translational regulation and complex IV assembly. |
Co-immunoprecipitation, mass spectrometry, yeast genetic analysis, identification of novel assembly factor Coa1, supercomplex detection |
The EMBO journal |
High |
17882259
|
| 2009 |
Bacterial Surf1 proteins (Surf1c and Surf1q from Paracoccus denitrificans) bind heme a in a 1:1 stoichiometry with Kd values in the submicromolar range when co-expressed with heme a synthesis enzymes; a conserved histidine residue is critical for heme binding. This supports a direct role for Surf1 in heme a cofactor insertion into COX subunit I. |
Redox difference spectroscopy, isothermal titration calorimetry, in vivo co-expression in E. coli, site-directed mutagenesis of conserved histidine |
The Journal of biological chemistry |
High |
19625251
|
| 2011 |
In vitro heme a transfer from purified heme a synthase (CtaA) to Surf1c was demonstrated. Mutation of four strictly conserved residues in the transmembrane region abolished heme binding. A conserved tryptophan in transmembrane helix II (W200 in Surf1c) discriminates between heme a and heme o intermediates and likely coordinates the heme a formyl group, orienting the cofactor for transfer to subunit I of COX. |
In vitro heme transfer assay, site-directed mutagenesis of transmembrane residues, heme composition analysis of purified protein |
The FEBS journal |
High |
21418525
|
| 2008 |
In Paracoccus denitrificans, Surf1c and Surf1q function independently for the aa3-type cytochrome c oxidase and the ba3-type quinol oxidase, respectively. Chromosomal deletion of either surf1 gene significantly reduced the corresponding oxidase activity. Analysis of purified COX heme content from Δsurf1 strains indicates Surf1 is involved in an early step of cofactor (heme) insertion into subunit I. |
Chromosomal gene deletion, oxidase activity assays, heme content analysis of purified cytochrome c oxidase |
Biochimica et biophysica acta |
Medium |
18582433
|
| 2011 |
In yeast, the Leigh syndrome-associated SURF1 missense mutation G124E (corresponding to G137E in Shy1) results in a non-functional protein that phenocopies shy1Δ cells, impairing Cox1 hemylation and lowering mitochondrial copper. The Y344D Shy1 mutant (corresponding to human Y274D) is stable and localizes correctly but accumulates in a 200 kDa COX assembly intermediate, and in yeast it uncouples Cox1 translational feedback regulation from complex IV assembly, demonstrating a dual role of Shy1 at distinct assembly steps. |
Yeast genetics, missense mutation introduction, suppressor screen, pulse-chase and assembly intermediate analysis by BN-PAGE, copper measurement |
Human molecular genetics |
High |
21470975
|
| 2010 |
The Leigh syndrome-associated G137E missense mutation in yeast Shy1 (corresponding to SURF1 G124E) results in a non-functional protein. A genetic screen for allele-specific suppressors of G137E Shy1 identified Coa2, Cox10, and a novel factor Coa4 (a twin CX9C motif IMS protein associated with the inner membrane). Coa4 deletion reduces COX activity without impairing Cox1 maturation, placing Coa4 downstream of the Shy1-stabilized Cox1 intermediate; overexpression of cytochrome c (Cyc1) suppresses coa4Δ, linking Coa4 to a cytochrome c-dependent step in COX assembly. |
Allele-specific suppressor screen, yeast deletion analysis, COX activity assay, subcellular fractionation |
Molecular and cellular biology |
Medium |
20624914
|
| 2003 |
In SURF1-null patient fibroblasts, absence of Surf1 protein leads to formation of incomplete COX assembly intermediates (~90–120 kDa) and 70–90% reduction in detergent-solubilized COX activity. In intact cells, COX electron-transport activity was only modestly reduced (13–31%), but was completely inhibited by detergent in patient cells (not controls), indicating instability of incomplete assemblies. Additionally, mitochondrial membrane potential sensitivity to uncoupler was increased 2.4-fold, suggesting impaired H+-pumping of incomplete complexes. |
Blue native PAGE immunoelectrophoresis, spectrophotometric COX assay, oxygen consumption in whole cells, cytofluorometry of membrane potential |
Biochimica et biophysica acta |
Medium |
12943968
|
| 2004 |
Cells harboring SURF1 mutations show decreased oxygen affinity of COX: the partial pressure of oxygen at half-maximal respiration (P50) was elevated 2.1-fold in intact coupled cells and 3.3-fold in permeabilized uncoupled cells, indicating that incomplete COX assemblies in SURF1-deficient cells have reduced affinity for oxygen. |
High-resolution respirometry in intact and digitonin-permeabilized patient fibroblasts, oxygen kinetics measurement |
American journal of physiology. Cell physiology |
Medium |
15269007
|
| 1999 |
None of several truncated or partially deleted SURF1 constructs could rescue COX activity in Surf-1p null mutant cells, indicating that multiple distinct regions of the protein are all essential for function. Furthermore, SURF1 transcripts are virtually absent in mutant cell lines carrying various loss-of-function mutations, suggesting that these mutations cause severe mRNA instability. |
Transfection of truncated SURF1 constructs into patient cells, functional complementation assay, Northern blot analysis |
Human molecular genetics |
Medium |
10556302
|
| 2000 |
Missense mutations G385A (Gly124→Glu, in a strictly conserved residue) and T751C (Ile246→Thr, disrupting a predicted β-sheet conserved in higher eukaryotes) are pathogenic SURF1 mutations causing COX assembly defects. COX activity was restored in patient fibroblasts by retroviral complementation with normal SURF1 cDNA, confirming causality. |
Sequencing, retroviral vector complementation in patient fibroblasts, COX activity measurement, evolutionary conservation analysis |
Human genetics |
Medium |
10746561
|
| 2007 |
Surf1 knockout mice (Surf1loxP-/-) show a biochemical and assembly COX defect, but also display markedly prolonged lifespan and complete protection from Ca2+-dependent neurotoxicity induced by kainic acid. Primary neuronal cultures from Surf1-/- mice show markedly reduced rise of cytosolic and mitochondrial Ca2+ and reduced mortality compared to controls, while mitochondrial membrane potential is unchanged, suggesting effects on Ca2+ homeostasis may be at least partly independent of effects on COX assembly. |
Surf1 knockout mouse model (loxP insertion), kainic acid neurotoxicity model, Ca2+ imaging in primary neuronal cultures, mitochondrial membrane potential measurement, lifespan analysis |
Human molecular genetics |
High |
17210671
|
| 2014 |
Surf1-/- mice show little or no difference in ROS generation, membrane potential, ATP production, or respiration in isolated mitochondria despite >50% reduction in COX activity; however, blood lactate is elevated and running endurance is reduced. Decreased COX activity is associated with increased markers of mitochondrial biogenesis (PGC-1α, VDAC) in heart and skeletal muscle, with tissue-specific induction of the mitochondrial unfolded protein response (UPRmt) in skeletal muscle and Nrf2 antioxidant pathway induction in heart. |
Surf1-/- mouse model, isolated mitochondria functional assays (ROS, membrane potential, ATP, respiration), blood lactate measurement, treadmill endurance testing, Western blot for biogenesis/stress markers |
The Biochemical journal |
High |
24911525
|
| 2016 |
Human SURF1 patient fibroblasts accumulate abundant COX1 assembly intermediates, have low COX monomer content, and preferentially recruit COX into I-III2-IVn supercomplexes, with almost no free COX. In contrast, Surf1-/- mouse fibroblasts show lower levels of COX1 intermediates and milder COX monomer decrease, indicating that COX assembly is much more dependent on SURF1 in humans than in mice, and revealing species-specific differences in COX biogenesis. |
2D BN-PAGE/SDS-PAGE, immunodetection, inhibition of mitochondrial proteosynthesis with pulse-chase metabolic labeling in patient and KO mouse fibroblasts and tissues |
Biochimica et biophysica acta |
High |
26804654
|
| 2012 |
In SURF1 patient fibroblasts, assembled COX is present entirely in supercomplex form (I-III2-IV), and lack of COX causes accumulation of the I-III2 supercomplex. The major COX subassemblies that accumulate due to SURF1 mutations range in size ~85–140 kDa and include Cox1-containing complexes. Up-regulation of respiratory chain complexes I, III, and V (32–54%) and accumulation of free Cox5a subunit represent posttranscriptional compensatory mechanisms in SURF1-deficient cells. |
BN-PAGE, 2D electrophoresis with WB, whole genome expression profiling, analysis of OXPHOS subunit levels in patient fibroblasts |
Biochimica et biophysica acta |
Medium |
22465034
|
| 1995 |
CpG methylation abolishes binding of ETS family transcription factors to the Su2 site of the bidirectional SURF1/SURF2 promoter; methylation of a single cytosine at position 3 of the consensus ETS site is sufficient to prevent binding. In contrast, methylation does not affect YY1 binding to the Su1 site. This methylation-sensitive ETS binding contributes to transcriptional repression of SURF1. |
In vitro DNase I footprinting, gel retardation/EMSA, promoter mutation analysis in vivo, CpG methylation of specific sites |
Nucleic acids research |
Medium |
7731802
|
| 1994 |
YY1 binds to the Su1 site of the bidirectional SURF-1/SURF-2 promoter and stimulates transcription preferentially in the Surf-1 direction. This was established by gel retardation, methylation interference, antibody supershift, and YY1 overexpression experiments. |
Gel retardation assay, methylation interference, antibody supershift, YY1 overexpression |
FEBS letters |
Medium |
8034020
|
| 2000 |
Myc overexpression or activation of a Myc-ER fusion protein activates transcription in the Surf-1 direction, and this response requires a functional YY1 binding site. Overexpression of MAP kinase phosphatase MKP-1 (inhibitor of the MAP kinase cascade) blocks the response of the Surf-1 promoter to serum factors. Together these data place the MAP kinase cascade and the Myc-YY1 interaction in the regulatory pathway controlling Surf-1 promoter activity. |
Overexpression of Myc, Myc-ER fusion, and MKP-1 in reporter assays; promoter mutation analysis |
Biochimica et biophysica acta |
Medium |
10858544
|
| 2005 |
Post-transcriptional silencing of the Drosophila melanogaster homolog of SURF1 (CG9943) produces COX-specific deficiency and mitochondrial dysfunction. Ubiquitous knockdown causes larval/pupal lethality with severely altered muscle mitochondria; CNS-restricted knockdown produces viable adults with reduced COX-specific activity, behavioral abnormalities (reduced locomotor speed, impaired optomotor response), and abnormal electroretinograms. |
UAS-dsRNA transgenic silencing, COX histochemistry, electron microscopy of mitochondria, behavioral and electrophysiological assays |
Genetics |
Medium |
16172499
|
| 2014 |
Silencing of Surf1 (CG9943) in Drosophila S2R+ cells causes selective loss of COX activity associated with decreased oxygen consumption and respiratory reserve. Larvae show defects in all mitochondrial respiratory chain complexes, while adults show COX-selective impairment, establishing that Surf1 is essential for COX activity and mitochondrial function in Drosophila. |
Post-transcriptional silencing in S2R+ cells and transgenic Drosophila, complex activity assays, oxygen consumption measurement, Seahorse respirometry |
The Journal of biological chemistry |
Medium |
25164807
|
| 2019 |
Deletion of the surf1 gene in Corynebacterium glutamicum prevents formation of a functional cytochrome aa3 oxidase and disrupts purification of the bc1-aa3 supercomplex. Surf1 homologs from C. diphtheriae, M. smegmatis, and M. tuberculosis can partially complement the growth defect, establishing Surf1 as a conserved assembly factor for actinobacterial cytochrome aa3 oxidase. |
Chromosomal surf1 deletion, oxidase activity assays (TMPD oxidation), membrane isolation, supercomplex purification attempt, heterologous complementation |
Biochimica et biophysica acta. Bioenergetics |
Medium |
31226315
|
| 2024 |
S. pombe Shy1 (SURF1 homolog) physically interacts with structural subunits and assembly factors of complex IV, as well as with Rip1 (a subunit of complex III), suggesting involvement in respiratory chain supercomplex assembly. Shy1 is required for expression of mtDNA-encoded genes. Unlike S. cerevisiae Shy1, deletion of shy1 in S. pombe does not critically disrupt respiratory chain assembly, indicating compensatory mechanisms. |
Co-immunoprecipitation, BN-PAGE, RT-qPCR of mtDNA-encoded genes, shy1 deletion strain analysis |
Scientific reports |
Medium |
39289458
|
| 2004 |
The SURF1 missense mutation T737C (I246T) is pathogenic — transfection of T737C-mutated SURF1 into SURF1-deficient cells did not restore normal SURF1 protein stability or COX activity. In contrast, the G604C mutation (D202H) is a neutral variant, as G604C-mutated SURF1 restored SURF1 stability and COX activity upon transfection. Absence of immunologically reactive SURF1 protein is diagnostic of pathogenic missense mutations. |
Transfection of missense mutant constructs into SURF1-deficient cells, Western blot for SURF1 protein, COX activity measurement |
Mitochondrion |
Medium |
16120373
|
| 2001 |
Surf1 protein is not implicated in the assembly of respiratory chain complexes I, II, III, or the pyruvate dehydrogenase complex — Western blot analysis in SURF1-deficient patient cells showed normal assembly of these complexes, confirming the COX-specific role of SURF1. |
Western blot and activity assays for multiple respiratory chain complexes in SURF1 patient fibroblasts |
The Journal of biological chemistry |
Medium |
11279059
|