Affinage

SH3GLB2

Endophilin-B2 · UniProt Q9NR46

Length
395 aa
Mass
44.0 kDa
Annotated
2026-06-10
14 papers in source corpus 5 papers cited in narrative 7 extracted findings
Cross-family judge faithfulness: 4/5 claims corpus-supported (80%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SH3GLB2 (endophilin B2) is an N-BAR domain-containing endophilin family protein that functions as a positive regulator of endosome maturation and intracellular membrane trafficking (PMID:28455444). It was first identified as a binding partner of endophilin B1 (SH3GLB1), forming homo- and heterodimers through a core coiled-coil region rather than its SH3 domain, and localizes to the cytoplasm where it is excluded from the nucleus (PMID:11161816). Through its N-BAR domain-mediated control of membrane curvature, SH3GLB2 promotes endosome acidification and downstream events including EGFR degradation, autophagic flux, and influenza A viral RNA nuclear entry, while leaving endocytic internalization and lysosomal function intact (PMID:28455444). Despite a localization and tissue distribution resembling endophilin B1 and colocalization with Bax, SH3GLB2 is dispensable for mitochondrial and Bax-mediated apoptosis (PMID:11161816, PMID:28455444). In vivo, loss of SH3GLB2 enhances recovery from severe H1N1 influenza infection, accompanied by induction of surfactant and alveolar genes and restoration of alveolar macrophages and CD4+ lymphocytes, indicating a role in lung homeostasis and alveolar immune cell recovery (PMID:28779131).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2001 Medium

    Established that SH3GLB2 is a cytoplasmic endophilin-family protein that dimerizes with SH3GLB1 through a defined structural element, framing it as a partner within the endophilin B system rather than an SH3-dependent adaptor.

    Evidence Yeast two-hybrid screen with domain mapping and subcellular localization

    PMID:11161816

    Open questions at the time
    • Functional consequence of the B1–B2 dimer not addressed
    • No biochemical reconstitution of the coiled-coil interaction
    • Cellular process served by the dimer unknown
  2. 2001 Medium

    Tested and excluded an apoptotic role despite Bax colocalization, ruling out a direct effect of SH3GLB2 on Bax-mediated cell death.

    Evidence Overexpression in HeLa and 293T cells with apoptosis assay (negative result)

    PMID:11161816

    Open questions at the time
    • Overexpression may not reflect endogenous function
    • Did not exclude apoptosis roles in other contexts
  3. 2017 High

    Defined the core cellular function of SH3GLB2 as a positive regulator of endosome maturation, linking its N-BAR membrane-curvature activity to acidification, receptor degradation, autophagy, and viral replication.

    Evidence Genetic knockout cells/mice with endosome acidification, EGFR degradation, autophagic flux, and viral RNA nuclear entry assays

    PMID:28455444

    Open questions at the time
    • Direct demonstration of N-BAR membrane binding/curvature on endosomal membranes not shown
    • Molecular partners coupling SH3GLB2 to the acidification machinery unidentified
    • Whether the B1–B2 dimer mediates this function untested
  4. 2017 Medium

    Confirmed via genetic knockout that SH3GLB2 is dispensable for mitochondrial apoptosis, distinguishing it functionally from endophilin B1 despite shared localization.

    Evidence Genetic knockout with apoptosis assay (negative result)

    PMID:28455444

    Open questions at the time
    • Functional divergence from endophilin B1 not mechanistically explained
  5. 2017 High

    Extended SH3GLB2 function to organismal physiology, showing that its loss improves recovery from influenza and restores alveolar homeostasis and immune cells, implicating it in lung tissue and immune recovery.

    Evidence B2-deficient mouse model with intranasal H1N1 infection, flow cytometry, gene expression analysis, and respiratory mechanics

    PMID:28779131

    Open questions at the time
    • Whether the protective phenotype derives from the endosome-maturation/viral-entry role is not directly connected
    • Cell-type responsible for the lung phenotype not resolved
  6. 2022 Low

    Placed SH3GLB2 aggregation within neurodegeneration-associated protein cascades downstream of TRAPPC6AΔ and TIAF1 in neurotoxin-treated neurons, and in AD models.

    Evidence MPP+ treatment and aggregation assays in SK-N-SH cells; 3xTg AD mouse aggregation studies

    PMID:29067327 PMID:36498839

    Open questions at the time
    • Pathway placement inferred from co-aggregation without direct epistasis
    • Mechanism of SH3GLB2 itself in aggregation not dissected
    • Causal contribution to neurodegeneration unestablished

Open questions

Synthesis pass · forward-looking unresolved questions
  • How SH3GLB2's N-BAR membrane-remodeling activity mechanistically drives endosome acidification, and whether its dimerization with SH3GLB1 is required for this function, remain unresolved.
  • No structural model of SH3GLB2 on membranes
  • Effectors linking SH3GLB2 to V-ATPase/acidification unknown
  • Functional role of the B1–B2 dimer in endosome maturation untested

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008289 lipid binding 1
Localization
GO:0005768 endosome 1 GO:0005829 cytosol 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 1 R-HSA-9612973 Autophagy 1
Partners

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2001 SH3GLB2 was identified as a binding partner of SH3GLB1 in a yeast two-hybrid screen; the interaction requires a core coiled-coil-type region, while the SH3 domain is not involved in homo- or heterodimer formation. SH3GLB2 colocalizes with Bax in the cytoplasmic compartment and is excluded from the nucleus. Yeast two-hybrid screen, domain mapping, subcellular localization Genomics Medium 11161816
2001 SH3GLB1 and SH3GLB2 do not significantly influence the onset or time course of Bax-mediated apoptosis in HeLa or 293T cells (negative result). Overexpression in HeLa and 293T cells with apoptosis assay Genomics Medium 11161816
2017 Endophilin B2 (SH3GLB2) positively regulates endosome maturation: its deficiency suppresses endosome acidification, EGFR degradation, autophagic flux, and influenza A viral RNA nuclear entry/replication, without affecting endocytic internalization or lysosomal function. The N-BAR domain is implicated in membrane curvature regulation of intracellular membrane dynamics. Genetic knockout (B2-deficient cells/mice), endosome acidification assay, EGFR degradation assay, autophagic flux assay, viral RNA nuclear entry assay The Journal of biological chemistry High 28455444
2017 SH3GLB2 (endophilin B2) is dispensable for mitochondrial apoptosis despite having intracellular localization and tissue distribution similar to endophilin B1 (negative result). Genetic knockout with apoptosis assay The Journal of biological chemistry Medium 28455444
2017 Loss of endophilin B2 (SH3GLB2) in mice enhances recovery from severe H1N1 influenza infection, associated with induction of surfactant protein genes, ABCA3, GM-CSF, podoplanin, caveolin, CEBPα/β/δ mRNAs, restoration of alveolar macrophages, and recruitment of CD4+ lymphocytes, indicating a role for SH3GLB2 in regulating lung homeostasis and alveolar immune cell recovery. B2-deficient mouse model, intranasal H1N1 infection, flow cytometry, gene expression analysis, respiratory mechanics assessment Scientific reports High 28779131
2017 SH3GLB2 protein aggregates in brain tissue of Alzheimer's disease triple-transgenic mice; Zfra peptide blocks this aggregation and restores memory, and Zfra was shown to bind cytosolic proteins to accelerate their degradation in a ubiquitin/proteasome-independent manner in vitro. In vivo 3xTg mouse model with peptide injection, in vitro aggregation assay, behavioral testing Alzheimer's & dementia (New York, N. Y.) Low 29067327
2022 SH3GLB2 aggregation occurs downstream of TRAPPC6AΔ (TPC6AΔ) and TIAF1 in a protein cascade triggered by MPP+ (a Parkinson's disease neurotoxin) in neuroblastoma SK-N-SH cells, placing SH3GLB2 in a neurodegeneration-associated aggregation pathway. Cell treatment with MPP+, protein aggregation assay in SK-N-SH neuroblastoma cells International journal of molecular sciences Low 36498839

Source papers

Stage 0 corpus · 14 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2001 SH3GLB, a new endophilin-related protein family featuring an SH3 domain. Genomics 94 11161816
2008 SPAS-1 (stimulator of prostatic adenocarcinoma-specific T cells)/SH3GLB2: A prostate tumor antigen identified by CTLA-4 blockade. Proceedings of the National Academy of Sciences of the United States of America 48 18303116
2011 Presence of histone H3 acetylated at lysine 9 in male germ cells and its distribution pattern in the genome of human spermatozoa. Reproduction, fertility, and development 45 22127005
2017 Zfra restores memory deficits in Alzheimer's disease triple-transgenic mice by blocking aggregation of TRAPPC6AΔ, SH3GLB2, tau, and amyloid β, and inflammatory NF-κB activation. Alzheimer's & dementia (New York, N. Y.) 34 29067327
2017 Endophilin B2 facilitates endosome maturation in response to growth factor stimulation, autophagy induction, and influenza A virus infection. The Journal of biological chemistry 29 28455444
2016 Integrative proteomics and transcriptomics identify novel invasive-related biomarkers of non-functioning pituitary adenomas. Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 27 26753958
2021 WWOX and Its Binding Proteins in Neurodegeneration. Cells 18 34359949
2017 SH3GLB2/endophilin B2 regulates lung homeostasis and recovery from severe influenza A virus infection. Scientific reports 15 28779131
2020 A tumor-specific neoepitope expressed in homologous/self or heterologous/viral antigens induced comparable effector CD8+ T-cell responses by DNA vaccination. Vaccine 10 32278524
2024 Multi-omics Analysis to Identify Key Immune Genes for Osteoporosis based on Machine Learning and Single-cell Analysis. Orthopaedic surgery 9 39238187
2022 WGCNA combined with GSVA to explore biomarkers of refractory neocortical epilepsy. IBRO neuroscience reports 7 36247523
2022 Zfra Inhibits the TRAPPC6AΔ-Initiated Pathway of Neurodegeneration. International journal of molecular sciences 3 36498839
2024 Zfra Overrides WWOX in Suppressing the Progression of Neurodegeneration. International journal of molecular sciences 1 38542478
2025 Predicting Diabetic Retinopathy Using a Machine Learning Approach Informed by Whole-Exome Sequencing Studies. Biomedical and environmental sciences : BES 0 39924156

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