Affinage

SH3GL3

Endophilin-A3 · UniProt Q99963

Length
347 aa
Mass
39.3 kDa
Annotated
2026-04-28
10 papers in source corpus 8 papers cited in narrative 8 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SH3GL3 is a BAR- and SH3-domain-containing endophilin-family protein that participates in membrane trafficking at nerve terminals and functions as a tumor suppressor in multiple cancer contexts. Its SH3 domain directly binds the proline-rich regions of dynamin I and synaptojanin, concentrating these endocytic effectors at synaptic terminals to facilitate synaptic vesicle recycling (PMID:9238017); the same SH3 domain mediates interaction with polyglutamine-expanded huntingtin, promoting aggregate formation relevant to Huntington disease pathology (PMID:9809064). In cancer cells, SH3GL3 suppresses proliferation, migration, stemness, and cell-cycle progression through SH3-domain-dependent mechanisms that include physical interaction with STAT3 to restrain its nuclear translocation (PMID:33524871, PMID:33168185) and modulation of FAK/PI3K signaling (PMID:27683032), while its expression is epigenetically silenced by DNMT1-mediated promoter methylation recruited by the lncRNA MIR210HG (PMID:37916731).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 1997 High

    Establishing SH3GL3 as a synaptic vesicle recycling component resolved the question of whether all three endophilin-family SH3 domains engage dynamin I and synaptojanin at nerve terminals.

    Evidence Yeast two-hybrid, co-immunoprecipitation from rat brain extracts, and immunofluorescence showing nerve-terminal enrichment

    PMID:9238017

    Open questions at the time
    • No direct demonstration that SH3GL3 loss impairs synaptic vesicle endocytosis in neurons
    • Relative contribution of SH3GL3 versus SH3GL1/SH3GL2 at the synapse is undefined
  2. 1998 High

    Demonstrating that SH3GL3 selectively binds pathological-length polyglutamine huntingtin and promotes its aggregation identified a novel molecular partner in Huntington disease aggregate formation.

    Evidence Co-immunoprecipitation from HD human brain, domain-deletion mutagenesis, and filter retardation aggregation assay in COS cells

    PMID:9809064

    Open questions at the time
    • Whether SH3GL3–huntingtin interaction contributes to neurodegeneration in vivo is untested
    • Stoichiometry and structural basis of SH3-domain/polyproline interaction with huntingtin are unresolved
  3. 2009 Medium

    Identifying DYDC1 as a BAR-domain interactor and linking SH3GL3 to clathrin-coated vesicle traffic during acrosome biogenesis extended its membrane-trafficking role beyond neurons.

    Evidence Yeast two-hybrid with BAR domain bait, RNAi knockdown in germ cells, and germ cell transplantation

    PMID:19545932

    Open questions at the time
    • Interaction awaits validation by reciprocal co-immunoprecipitation from endogenous testis extracts
    • Whether BAR-domain–mediated membrane tubulation is required for acrosome formation is unknown
  4. 2012 Medium

    Showing that SH3GL3 knockdown inhibits glioma cell invasion provided the first evidence that SH3GL3 has tumor-suppressive activity, opening its characterization in cancer biology.

    Evidence shRNA knockdown with Matrigel transwell invasion assay in glioma cells

    PMID:21722156

    Open questions at the time
    • Mechanism by which SH3GL3 restrains invasion was not identified
    • No in vivo tumor model used
  5. 2016 Medium

    Linking SH3GL3 overexpression to FAK/PI3K activation in myeloma identified a context where SH3GL3 paradoxically promotes migration and stemness, contrasting with its tumor-suppressive role in glioma.

    Evidence Gain- and loss-of-function in myeloma cells with FAK/PI3K pharmacological inhibitor rescue and Western blot

    PMID:27683032

    Open questions at the time
    • Direct physical interaction between SH3GL3 and FAK or PI3K was not demonstrated
    • Context-dependent pro- versus anti-tumorigenic roles remain mechanistically unexplained
  6. 2020 Medium

    Demonstrating SH3-domain dependence for SH3GL3's anti-proliferative, pro-apoptotic, and p21-inducing activities in lung cancer established that its tumor-suppressive function requires the same domain used in endocytic partner binding.

    Evidence Overexpression of full-length versus SH3-deletion mutants in lung cancer cells with proliferation, flow cytometry, and qRT-PCR readouts

    PMID:33168185

    Open questions at the time
    • The SH3-domain binding partner responsible for p21 upregulation is unidentified
    • Transcriptional mechanism linking SH3GL3 to p21 promoter activation is unknown
  7. 2021 Medium

    Identifying STAT3 as a direct SH3GL3-interacting protein whose nuclear translocation is blocked by SH3GL3 provided a mechanistic explanation for its tumor-suppressive effects in glioblastoma.

    Evidence Co-immunoprecipitation, immunofluorescence for STAT3 localization, and epistasis rescue with constitutively active STAT3-C in glioblastoma cells

    PMID:33524871

    Open questions at the time
    • Domain on SH3GL3 that mediates STAT3 binding is not mapped
    • Whether STAT3 sequestration explains the lung cancer phenotype or p21 induction is untested
  8. 2023 Medium

    Revealing that the lncRNA MIR210HG recruits DNMT1 to methylate the SH3GL3 promoter explained how SH3GL3 expression is epigenetically silenced in lung cancer.

    Evidence ChIP for DNMT1 at SH3GL3 promoter, RNA immunoprecipitation for MIR210HG–DNMT1, methylation-specific PCR, and functional rescue in lung cancer cells

    PMID:37916731

    Open questions at the time
    • Whether MIR210HG-mediated silencing operates in other cancer types is unknown
    • No in vivo demonstration that restoring SH3GL3 expression reverses tumor growth

Open questions

Synthesis pass · forward-looking unresolved questions
  • The structural basis for SH3GL3's context-dependent pro- versus anti-tumorigenic activities, the identity of the SH3-domain partner responsible for p21 transcriptional induction, and the in vivo physiological consequence of SH3GL3 loss in neurons remain unresolved.
  • No knockout or conditional deletion mouse model phenotype reported
  • No structural determination of SH3GL3 BAR or SH3 domains
  • Relationship between endocytic function and tumor-suppressive role is mechanistically unconnected

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 3
Localization
GO:0031410 cytoplasmic vesicle 2 GO:0005829 cytosol 1 GO:0005886 plasma membrane 1
Pathway
R-HSA-162582 Signal Transduction 2 R-HSA-5653656 Vesicle-mediated transport 2

Evidence

Reading pass · 8 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1997 SH3GL3 (SH3p13) binds to both synaptojanin and dynamin I via its SH3 domain, which is closely related to the SH3 domain of Grb2; pools of synaptojanin and dynamin I were co-precipitated from brain extracts with anti-SH3p4/8/13 antibodies, and the proteins are concentrated in nerve terminals, implicating SH3GL3 in synaptic vesicle recycling. Yeast two-hybrid screen, co-immunoprecipitation from rat brain extracts, immunofluorescence localization Proceedings of the National Academy of Sciences of the United States of America High 9238017
1998 SH3GL3 selectively interacts with huntingtin exon 1 protein (HDex1p) containing a polyglutamine repeat in the pathological range and promotes formation of insoluble polyglutamine-containing aggregates in vivo; the C-terminal SH3 domain of SH3GL3 and the proline-rich region of HDex1p are essential for this interaction; full-length huntingtin was co-immunoprecipitated from HD human brain extract with anti-SH3GL3 antibody. Co-immunoprecipitation, immunofluorescence co-localization in transfected COS cells, domain-deletion mutagenesis, filter retardation aggregation assay Molecular cell High 9809064
2009 SH3GL3 (SH3P13) BAR domain interacts with DYDC1 (identified by yeast two-hybrid using BAR domain as bait); SH3P13 assists in regulating clathrin-coated vesicle traffic crucial for acrosome biogenesis during spermatogenesis in the testis. Yeast two-hybrid with BAR domain as bait, co-expression/localization analysis, RNAi knockdown in germ cells, germ cell transplantation European journal of cell biology Medium 19545932
2012 Knockdown of SH3GL3 inhibits glioma cell invasion in vitro, establishing a functional role for SH3GL3 in glioma cell invasiveness. shRNA knockdown, in vitro invasion assay (Matrigel transwell) Neuropathology and applied neurobiology Medium 21722156
2016 SH3GL3 promotes myeloma cell migration/invasion, stemness, and chemo-resistance through the FAK/PI3K signaling pathway; overexpression of SH3GL3 increased p-FAK and p-PI3K, and pharmacological inhibition of FAK or PI3K attenuated SH3GL3-mediated migration/invasion. shRNA knockdown, cDNA overexpression, pharmacological inhibition (FAK inhibitor 14, LY294002), migration/invasion assays, Western blot Oncotarget Medium 27683032
2020 SH3GL3 inhibits lung cancer cell proliferation and migration, arrests the cell cycle at G0/G1, induces apoptosis, and suppresses cancer stem cell self-renewal in a manner dependent on its SH3 domain; it up-regulates p21 at the transcriptional level. Overexpression with SH3 domain deletion mutants, cell proliferation/migration assays, flow cytometry, qRT-PCR for p21 Biochemical and biophysical research communications Medium 33168185
2021 SH3GL3 physically interacts with STAT3 and inhibits STAT3 nuclear localization in glioblastoma cells; constitutively active STAT3 (STAT3-C) rescues the anti-proliferative and anti-stemness effects of SH3GL3 overexpression, placing SH3GL3 upstream of STAT3 nuclear translocation. Co-immunoprecipitation, immunofluorescence, overexpression + epistasis rescue with STAT3-C construct Biochemical and biophysical research communications Medium 33524871
2023 MIR210HG lncRNA inhibits SH3GL3 transcription by recruiting DNMT1 to the SH3GL3 promoter region, leading to promoter methylation and reduced SH3GL3 expression in lung cancer cells; knockdown of MIR210HG or overexpression of SH3GL3 suppresses lung cancer cell proliferation, migration, and invasion. Chromatin immunoprecipitation (ChIP) showing DNMT1 binding to SH3GL3 promoter, RNA immunoprecipitation showing MIR210HG-DNMT1 interaction, methylation-specific PCR, shRNA knockdown, overexpression assays The Kaohsiung journal of medical sciences Medium 37916731

Source papers

Stage 0 corpus · 10 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1997 The SH3p4/Sh3p8/SH3p13 protein family: binding partners for synaptojanin and dynamin via a Grb2-like Src homology 3 domain. Proceedings of the National Academy of Sciences of the United States of America 334 9238017
1998 SH3GL3 associates with the Huntingtin exon 1 protein and promotes the formation of polygln-containing protein aggregates. Molecular cell 177 9809064
2012 Identification and functional validation of CDH11, PCSK6 and SH3GL3 as novel glioma invasion-associated candidate genes. Neuropathology and applied neurobiology 40 21722156
2009 Interaction of SH3P13 and DYDC1 protein: a germ cell component that regulates acrosome biogenesis during spermiogenesis. European journal of cell biology 23 19545932
2016 The role of SH3GL3 in myeloma cell migration/invasion, stemness and chemo-resistance. Oncotarget 19 27683032
2020 SH3GL3 functions as a potent tumor suppressor in lung cancer in a SH3 domain dependent manner. Biochemical and biophysical research communications 17 33168185
2023 LncRNA MIR210HG promotes the proliferation, migration, and invasion of lung cancer cells by inhibiting the transcription of SH3GL3. The Kaohsiung journal of medical sciences 10 37916731
2021 SH3GL3 acts as a novel tumor suppressor in glioblastoma tumorigenesis by inhibiting STAT3 signaling. Biochemical and biophysical research communications 7 33524871
1998 Characterization of the mouse Src homology 3 domain gene Sh3d2c on Chr 7 demonstrates coexpression with huntingtin in the brain and identifies the processed pseudogene Sh3d2c-ps1 on Chr 2. Genomics 7 9878254
2025 Molecular mechanism of SH3GL3 recombinant protein and attenuates the acute lung inflammation in Klebsiella pneumonia rats by mollugin treatment by regulating STAT3/ROS signaling pathway. International journal of biological macromolecules 1 40120906