Affinage

SEC14L4

SEC14-like protein 4 · UniProt Q9UDX3

Length
406 aa
Mass
46.6 kDa
Annotated
2026-06-10
21 papers in source corpus 3 papers cited in narrative 3 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SEC14L4 (TAP3) is a SEC14p-like protein that combines lipid/tocopherol binding with a role in stabilizing an RNA helicase to drive tumor cell growth (PMID:15567179, PMID:41741625). As a recombinant protein it binds alpha-, beta-, gamma-, and delta-tocopherol, select phospholipids, and squalene, and exhibits intrinsic GTPase activity comparable to Rab-family small GTP-binding proteins, with GTPase-related motifs spatially positioned to form a functional GTP-binding and hydrolysis site (PMID:15567179). In esophageal squamous cell carcinoma, SEC14L4 directly interacts with DDX3X and blocks RNF39-mediated ubiquitination and proteasomal degradation of DDX3X, thereby stabilizing it; this places SEC14L4 upstream of DDX3X in a pathway that activates MAPK signaling and suppresses ferroptosis, and loss of SEC14L4 reduces proliferation, migration, and colony formation while promoting apoptosis in a manner rescued by DDX3X overexpression (PMID:41741625). Beyond these biochemical and oncogenic activities, the mechanistic integration of SEC14L4's lipid-binding and GTPase functions with its DDX3X-stabilizing role has not been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2005 Medium

    Established the biochemical identity of SEC14L4 as a SEC14p-like ligand-binding protein that also carries intrinsic GTPase activity, defining two candidate molecular activities for an otherwise uncharacterized protein.

    Evidence Recombinant protein expressed in E. coli, purified, and assayed for tocopherol/phospholipid/squalene binding and GTP hydrolysis in vitro

    PMID:15567179

    Open questions at the time
    • No mutagenesis confirming the proposed GTPase active site
    • In vitro binding does not establish a physiological lipid ligand or cellular GTPase function
    • No cellular localization or pathway context
  2. 2009 Low

    Documented gene-level complexity of human TAP3/SEC14L4, showing alternative splicing and a coding-region polymorphism, but did not link any variant to function.

    Evidence cDNA isolation, sequencing, and characterization of splice variants and polymorphism

    PMID:20012369

    Open questions at the time
    • No functional assay connecting splice variant or polymorphism to protein activity
    • Single molecular characterization method
    • No phenotypic consequence established
  3. 2026 Medium

    Defined a cellular and oncogenic mechanism in which SEC14L4 stabilizes DDX3X by protecting it from RNF39-mediated degradation, linking SEC14L4 to MAPK activation and ferroptosis suppression in cancer.

    Evidence Reciprocal Co-IP with mass spectrometry, ubiquitination assays, MAPK/ferroptosis marker Western blots, knockdown/overexpression proliferation-migration-apoptosis assays, and xenograft models in ESCC cells

    PMID:41741625

    Open questions at the time
    • No independent replication beyond a single lab
    • How the 2005 lipid-binding/GTPase activities relate to DDX3X stabilization is unresolved
    • Direct interface mapping of the SEC14L4–DDX3X interaction not performed

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether SEC14L4's lipid/tocopherol binding and GTPase activity mechanistically contribute to its DDX3X-stabilizing, pro-tumorigenic role, and whether this function extends beyond esophageal squamous cell carcinoma, remain open.
  • No structural model of the SEC14L4–DDX3X complex
  • No demonstration that GTPase activity is required for DDX3X stabilization
  • Physiological (non-cancer) role uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0003924 GTPase activity 1 GO:0008289 lipid binding 1
Partners

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2005 Recombinant human SEC14L4 (TAP3) binds alpha-, beta-, gamma-, and delta-tocopherol, certain phospholipids, and squalene in vitro, and possesses intrinsic GTPase activity comparable to Rab family small GTP-binding proteins. The GTPase-related motifs in SEC14L4 differ in surrounding secondary structure from canonical G-protein domains but are positioned in close proximity, suggesting they form a functional active site for GTP binding and hydrolysis. Recombinant protein expression in E. coli, His-tag purification, in vitro ligand-binding assays (tocopherols, phospholipids, squalene), and GTPase activity assay Biochemical and biophysical research communications Medium 15567179
2009 The human TAP3/SEC14L4 gene undergoes alternative splicing, producing an alternatively spliced cDNA isoform, and contains a polymorphism within its coding region. The encoded protein belongs to the SEC14p-like family implicated in intracellular lipid transport. cDNA isolation, sequencing, and characterization of alternative splice variants and coding-region polymorphism Molecular biology reports Low 20012369
2026 SEC14L4 directly interacts with DDX3X (identified by Co-IP and mass spectrometry) and inhibits RNF39-mediated ubiquitination and proteasomal degradation of DDX3X in esophageal squamous cell carcinoma cells. SEC14L4 loss-of-function reduces ESCC cell proliferation, migration, and colony formation while promoting apoptosis; these effects are rescued by DDX3X overexpression, placing SEC14L4 upstream of DDX3X in a pathway that activates MAPK signaling and suppresses ferroptosis. Co-immunoprecipitation, mass spectrometry, ubiquitination assays, Western blot (MAPK pathway and ferroptosis markers), cell proliferation/migration/apoptosis assays with knockdown and overexpression, in vivo xenograft tumor models Oncogene Medium 41741625

Source papers

Stage 0 corpus · 21 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2006 Functional analyses of two tomato APETALA3 genes demonstrate diversification in their roles in regulating floral development. The Plant cell 147 16844904
2021 Multiple-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage. The Journal of clinical investigation 90 34014839
2022 Donor genetic and nongenetic factors affecting red blood cell transfusion effectiveness. JCI insight 79 34793330
2020 Immunoenhancing glucuronoxylomannan from Tremella aurantialba Bandoni et Zang and its low-molecular-weight fractions by radical depolymerization: Properties, structures and effects on macrophages. Carbohydrate polymers 58 32299559
2014 Transcriptional and hormonal regulation of petal and stamen development by STAMENLESS, the tomato (Solanum lycopersicum L.) orthologue to the B-class APETALA3 gene. Journal of experimental botany 50 24659487
2019 Aberrant Stamen Development is Associated with Parthenocarpic Fruit Set Through Up-Regulation of Gibberellin Biosynthesis in Tomato. Plant & cell physiology 24 30192961
2016 The tomato floral homeotic protein FBP1-like gene, SlGLO1, plays key roles in petal and stamen development. Scientific reports 24 26842499
2005 Recombinant SEC14-like proteins (TAP) possess GTPase activity. Biochemical and biophysical research communications 22 15567179
2017 Phenotypic, genetic and molecular characterization of 7B-1, a conditional male-sterile mutant in tomato. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 18 28815278
2017 Silencing SlAGL6, a tomato AGAMOUS-LIKE6 lineage gene, generates fused sepal and green petal. Plant cell reports 16 28352968
2012 Elevation of transcription factor Islet-1 levels in vivo increases β-cell function but not β-cell mass. Islets 16 22595886
2023 A novel transcriptomic signature associated with lymphovascular invasion predicts clinical outcomes, tumor microenvironment, and therapeutic response in lung adenocarcinoma. International immunopharmacology 10 38064818
2020 Expression quantitative trait loci-derived scores and white matter microstructure in UK Biobank: a novel approach to integrating genetics and neuroimaging. Translational psychiatry 10 32066731
2024 Temporal Assessment of Protein Stability in Dried Blood Spots. Journal of proteome research 9 38950347
2009 Alternative splicing and gene polymorphism of the human TAP3/SEC14L4 gene. Molecular biology reports 7 20012369
2025 Immune and genetic landscapes of biliary atresia: a pathway to precision medicine. BMC pediatrics 2 40665272
2025 A new fucosylated glucuronoxylomannan from the fruit bodies of Tremella aurantia: structural characterization and immunoenhancing activity on seasonal influenza mRNA vaccine. Carbohydrate polymers 2 41320418
2026 Structural insights into the antibacterial function of the Pseudomonas putida effector Tke5. The EMBO journal 1 41526723
2024 The role of SEC14L4 in esophageal squamous cell cancer: insights into clinical relevance and molecular pathways. Translational cancer research 1 39525030
2026 SEC14L4 promotes the development of esophageal squamous cell cancer by inhibiting the ubiquitination and degradation of DDX3X via RNF39. Oncogene 0 41741625
2020 The expression pattern of ACTBL2 in thymoma reveals its potential therapeutic target efficacy. Journal of B.U.ON. : official journal of the Balkan Union of Oncology 0 33277874

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