Affinage

SCIN

Scinderin · UniProt Q9Y6U3

Length
715 aa
Mass
80.5 kDa
Annotated
2026-06-10
22 papers in source corpus 8 papers cited in narrative 8 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SCIN (scinderin) is an actin-cytoskeleton regulatory protein that controls F-actin organization and, through it, cell proliferation, migration, and invasion across multiple cell types (PMID:24212916, PMID:37450577). Its abundance is set post-translationally by the autophagy-lysosome pathway: PIK3C3 (VPS34) kinase activity drives SCIN turnover, and loss of PIK3C3 causes SCIN accumulation; the kinase also phosphorylates HDAC6 at S59, which then deacetylates accumulated SCIN at K189, leading to F-actin disassembly and disruption of Sertoli cell polarity (PMID:37450577). SCIN is further constrained at the transcriptional level by RSRC2, which directly suppresses its expression in triple-negative breast cancer, and post-transcriptionally by miR-301a-5p and by the MEX3A/miR-3163 axis (PMID:34405002, PMID:35490173, PMID:38201443). When SCIN is elevated it promotes proliferation, motility, and epithelial-mesenchymal transition through STAT3 and NF-κB signaling, whereas SCIN loss arrests cells in G0/G1 with upregulation of p21 and CDKN2A, linking its actin function to cell cycle control (PMID:24212916, PMID:25303873, PMID:34405002, PMID:35490173).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2013 Medium

    Established that SCIN is required for cancer cell cycle progression, moving it from an actin-regulatory protein to a driver of proliferation.

    Evidence Lentiviral RNAi knockdown in PC3 prostate cancer cells with flow-cytometry cell cycle analysis and colony formation

    PMID:24212916

    Open questions at the time
    • No rescue experiment to confirm specificity
    • Mechanism linking SCIN actin activity to p21/CDKN2A induction not defined
    • Single cell line
  2. 2014 Medium

    Generalized SCIN's proliferative role beyond prostate cancer by showing it controls G0/G1 transition and cyclin expression in lung carcinoma.

    Evidence Lentiviral RNAi knockdown in A549 and H1299 lung carcinoma cells with cell cycle analysis and western blot

    PMID:25303873

    Open questions at the time
    • No rescue
    • Causal link between SCIN and cyclin/PARP changes not mechanistically resolved
    • Single lab
  3. 2016 Low

    Provided genetic evidence that SCIN functions in opposition to CDC42 in actin organization, contextualizing its severing/capping role in tumor phenotype.

    Evidence Genome-wide epistasis analysis of CDC42 and SCIN SNPs with melanoma Breslow thickness, replicated in an independent cohort

    PMID:27347659

    Open questions at the time
    • Genetic association only, no direct protein-level experiment
    • Opposing actin roles inferred, not tested here
  4. 2021 Medium

    Identified SCIN as a direct target of miR-301a-5p and connected its activity to STAT3/NF-κB-driven proliferation, motility, and EMT in gastric cancer.

    Evidence Dual-luciferase reporter assay, qRT-PCR, functional assays, and pathway inhibition in gastric cancer cells

    PMID:34405002

    Open questions at the time
    • Whether SCIN acts directly on STAT3/NF-κB or indirectly via actin remodeling unresolved
    • Single lab
  5. 2022 Medium

    Placed SCIN within an oncogenic regulatory hierarchy downstream of MEX3A/miR-3163 and upstream of NF-κB in nasopharyngeal carcinoma.

    Evidence Expression arrays, rescue experiments, NF-κB inhibition, and in vivo tumor growth in NPC models

    PMID:35490173

    Open questions at the time
    • No direct MEX3A-SCIN binding shown
    • Mechanism by which SCIN activates NF-κB not defined
  6. 2023 High

    Defined the post-translational control of SCIN abundance, showing PIK3C3-dependent autophagy degrades SCIN and an HDAC6-mediated K189 deacetylation event governs its effect on F-actin and cell polarity.

    Evidence Sertoli-cell-specific Pik3c3 conditional knockout mouse with proteomics, phosphoproteomics, autophagy/proteasome pathway analysis, and site-specific mutagenesis of HDAC6 S59 and SCIN K189

    PMID:37450577

    Open questions at the time
    • Direct demonstration of K189 acetylation altering SCIN severing/capping activity in vitro not shown
    • How deacetylated SCIN drives F-actin disassembly mechanistically incomplete
  7. 2023 Medium

    Established RSRC2 as a direct transcriptional repressor of SCIN whose tumor-suppressive effects in TNBC are mediated by keeping SCIN low.

    Evidence ChIP-seq, ChIP-qPCR, transcriptome arrays, rescue experiments, and a metastatic mouse model in triple-negative breast cancer cells

    PMID:38201443

    Open questions at the time
    • Downstream effectors of SCIN in TNBC adhesion/invasion not fully resolved
    • Single lab
  8. 2025 Low

    Connected SCIN to oxygen-sensitive signaling by placing it downstream of HIF-1α in controlling chondrocyte F-actin dynamics and dedifferentiation.

    Evidence 3D chondrogenic organoid and in vivo osteoarthritis models with pharmacological RhoA/ROCK and HIF-1α/SCIN pathway manipulation

    PMID:41135736

    Open questions at the time
    • HIF-1α→SCIN axis inferred pharmacologically, not directly validated
    • Abstract-level mechanistic detail only

Open questions

Synthesis pass · forward-looking unresolved questions
  • How SCIN's calcium-regulated actin severing/capping activity is biochemically coupled to its downstream effects on STAT3/NF-κB signaling and cell cycle arrest remains unresolved.
  • No in vitro reconstitution linking acetylation state to actin-severing activity
  • Direct molecular bridge between SCIN actin remodeling and transcriptional/cell cycle outputs not established

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008092 cytoskeletal protein binding 2
Localization
GO:0005856 cytoskeleton 1
Pathway
R-HSA-1640170 Cell Cycle 2 R-HSA-9612973 Autophagy 1
Partners

Evidence

Reading pass · 8 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2013 Knockdown of SCIN (scinderin) in PC3 prostate cancer cells inhibits proliferation and colony formation, and induces G0/G1 cell cycle arrest with upregulation of p21Waf1/Cip1 and CDKN2A (p16Ink4A) and altered cyclin A2 expression, demonstrating SCIN's role in cell cycle progression. Lentivirus-mediated RNAi knockdown, cell cycle analysis (flow cytometry), colony formation assay International journal of oncology Medium 24212916
2014 Knockdown of SCIN in lung carcinoma cell lines A549 and H1299 inhibits proliferation and colony formation, induces G0/G1 arrest and sub-G1 accumulation, and alters expression of Cyclin B1, Cyclin D1, p21, and PARP, establishing SCIN's role in lung carcinoma cell proliferation and cell cycle regulation. Lentivirus-mediated RNAi knockdown, flow cytometry cell cycle analysis, western blot Gene Medium 25303873
2023 PIK3C3 (VPS34) kinase activity and autophagy regulation in Sertoli cells negatively regulates SCIN (scinderin): loss of PIK3C3 causes accumulation of SCIN via failure of autophagy-lysosome pathway degradation. HDAC6, phosphorylated at S59 by PIK3C3, deacetylates SCIN at K189 when it accumulates in PIK3C3-null Sertoli cells, leading to F-actin cytoskeleton disassembly and disruption of Sertoli cell polarity. Conditional knockout mouse model (Pik3c3 Sertoli-cell-specific deletion), proteomics/phosphoproteomics, autophagy-lysosome pathway inhibition, ubiquitin-proteasome pathway analysis, site-specific mutagenesis (HDAC6 S59, SCIN K189) Autophagy High 37450577
2021 miR-301a-5p directly targets SCIN mRNA (validated by dual-luciferase reporter assay); knockdown of SCIN phenocopies miR-301a-5p overexpression by promoting gastric cancer cell proliferation and motility via STAT3 and NF-κB signaling and epithelial-mesenchymal transition. Dual-luciferase reporter assay, qRT-PCR, western blot, CCK-8/colony formation/Transwell assays, pathway inhibition Journal of Cancer Medium 34405002
2022 MEX3A promotes NPC progression via a miR-3163/SCIN axis: MEX3A depletion reduces SCIN expression, and SCIN depletion reverses MEX3A-driven oncogenic effects; NF-κB signaling inhibition reverses effects of both SCIN and MEX3A overexpression, placing SCIN downstream of MEX3A/miR-3163 and upstream of NF-κB signaling in NPC. Whole-transcript expression arrays, bioinformatic analysis, rescue experiments (siRNA/overexpression), NF-κB signaling inhibition, in vitro cell function assays, in vivo tumor growth Cell death & disease Medium 35490173
2023 RSRC2 transcriptionally suppresses SCIN expression in triple-negative breast cancer cells; SCIN re-expression in RSRC2-overexpressing cells reverses the suppression of cell adhesion, proliferation, migration, and invasion caused by RSRC2, establishing SCIN as a direct downstream transcriptional target of RSRC2 that mediates TNBC cell functions. ChIP-seq, ChIP-qPCR, Human Transcriptome Array, RT-qPCR, western blot, cell function assays in vitro, metastatic mouse model in vivo, rescue experiments Cancers Medium 38201443
2025 PDGF-BB suppresses F-actin formation and chondrocyte dedifferentiation in osteoarthritis through oxygen-dependent regulation of HIF-1α/SCIN signaling and inhibition of the RhoA/ROCK pathway, placing SCIN downstream of HIF-1α in controlling F-actin cytoskeleton dynamics in chondrocytes. 3D chondrogenic organoid model, in vitro and in vivo OA models, pharmacological pathway manipulation (RhoA/ROCK inhibition), HIF-1α/SCIN pathway analysis European journal of pharmacology Low 41135736
2016 Genetic interaction analysis identified a statistically significant epistatic interaction between CDC42 and SCIN SNPs in melanoma Breslow thickness, consistent with their known opposing roles in actin cytoskeleton organization—CDC42 promotes actin polymerization while SCIN (scinderin) severs and caps F-actin. GWAS epistasis analysis (genome-wide interaction study), replication in independent cohort International journal of cancer Low 27347659

Source papers

Stage 0 corpus · 22 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2008 SciN is an outer membrane lipoprotein required for type VI secretion in enteroaggregative Escherichia coli. Journal of bacteriology 182 18805985
2006 Early expression of SCIN and CHIPS drives instant immune evasion by Staphylococcus aureus. Cellular microbiology 120 16882032
2013 Suppression of SCIN inhibits human prostate cancer cell proliferation and induces G0/G1 phase arrest. International journal of oncology 42 24212916
2010 Molecular basis for complement recognition and inhibition determined by crystallographic studies of the staphylococcal complement inhibitor (SCIN) bound to C3c and C3b. Journal of molecular biology 35 20654625
2012 Advances in understanding the structure, function, and mechanism of the SCIN and Efb families of Staphylococcal immune evasion proteins. Advances in experimental medicine and biology 34 21948365
2018 Production of Staphylococcal Complement Inhibitor (SCIN) and Other Immune Modulators during the Early Stages of Staphylococcus aureus Biofilm Formation in a Mammalian Cell Culture Medium. Infection and immunity 28 29784858
2011 Diversity in the C3b [corrected] contact residues and tertiary structures of the staphylococcal complement inhibitor (SCIN) protein family. The Journal of biological chemistry 26 22086928
2014 Lentivirus-mediated silencing of SCIN inhibits proliferation of human lung carcinoma cells. Gene 22 25303873
2021 MiR-301a-5p/SCIN promotes gastric cancer progression via regulating STAT3 and NF-κB signaling. Journal of Cancer 20 34405002
2023 RSRC2 Expression Inhibits Malignant Progression of Triple-Negative Breast Cancer by Transcriptionally Regulating SCIN Expression. Cancers 16 38201443
2022 MEX3A promotes nasopharyngeal carcinoma progression via the miR-3163/SCIN axis by regulating NF-κB signaling pathway. Cell death & disease 16 35490173
2012 A structurally dynamic N-terminal helix is a key functional determinant in staphylococcal complement inhibitor (SCIN) proteins. The Journal of biological chemistry 16 23233676
2023 Autophagy regulation and protein kinase activity of PIK3C3 controls sertoli cell polarity through its negative regulation on SCIN (scinderin). Autophagy 15 37450577
2017 A human monoclonal antibody that specifically binds and inhibits the staphylococcal complement inhibitor protein SCIN. Virulence 12 28277903
2016 A comprehensive genome-wide analysis of melanoma Breslow thickness identifies interaction between CDC42 and SCIN genetic variants. International journal of cancer 11 27347659
2015 Identification of peptidic inhibitors of the alternative complement pathway based on Staphylococcus aureus SCIN proteins. Molecular immunology 10 26052070
2009 Crystallization of human complement component C3b in the presence of a staphylococcal complement-inhibitor protein (SCIN). Acta crystallographica. Section F, Structural biology and crystallization communications 9 19407382
2025 sCIN: a contrastive learning framework for single-cell multi-omics data integration. Briefings in bioinformatics 2 40856525
2025 PDGF-BB inhibits F-actin formation and chondrocyte dedifferentiation in osteoarthritis via oxygen-dependent HIF-1α/SCIN regulation and RhoA/ROCK signaling inhibition. European journal of pharmacology 1 41135736
2024 Comprehensive Analysis Based on the TCGA Database Identified SCIN as a Key DNA Methylation-Driver Gene in Epstein-Barr Virus-Associated Gastric Cancer. Biochemical genetics 1 38411940
2019 [Clinical Study of SCIN Expression and Dromoter Methylation in Patients with Chronic Myeloid Leukemia]. Zhongguo shi yan xue ye xue za zhi 1 31204912
2026 In vitro and In silico Analysis of SCIN rs376349889 as a Potential Biomarker for Gastric and Colorectal Cancers. Avicenna journal of medical biotechnology 0 42080107

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