Affinage

Showing SARS1SARS is a alias.

SARS1

Serine--tRNA ligase, cytoplasmic · UniProt P49591

Length
514 aa
Mass
58.8 kDa
Annotated
2026-06-10
27 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/5 claims corpus-supported (80%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SARS1 (seryl-tRNA synthetase 1) is a cytosolic aminoacyl-tRNA synthetase that ligates serine to its cognate tRNA, an essential step in protein synthesis whose loss is incompatible with normal cellular maintenance (PMID:36041817). Direct serylation assays in patient fibroblasts and yeast complementation establish that disease-associated SARS1 variants impair aminoacylation activity, and loss of function drives cellular senescence marked by arrested division, beta-galactosidase accumulation, and elevated SASP factors (IL-6, p21, p16, p53) (PMID:36041817). A recurrent biallelic active-site missense variant (p.Arg213Leu) destabilizes the protein and reduces enzymatic activity, causing a neurodevelopmental syndrome with developmental delay, deafness, cardiomyopathy, and metabolic decompensation (PMID:34570399); SARS1 variants are thus causative of recessive and dominant-negative neurodevelopmental disorders (PMID:36041817, PMID:34570399). Beyond catalysis, SARS1 coordinates tRNA modification through interaction with m3C32 tRNA methyltransferases and exerts non-canonical nuclear functions, including repression of VEGFA transcription in complexes with YY1 and SIRT2 and binding of telomeric DNA in cooperation with POT1 to regulate telomere length, with these activities tuned by hypoxia-driven phosphorylation and nutrient-dependent glycosylation (PMID:38255739). SARS1 is a pan-essential dependency that can be selectively degraded in HPV-positive cancer cells (PMID:40049166).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2021 Medium

    Establishing whether a recurrent SARS1 active-site variant is biochemically deleterious connected the gene to a defined neurodevelopmental syndrome and showed the mechanism is protein destabilization plus catalytic loss, not merely sequence change.

    Evidence Protein stability assessment and aminoacylation activity assay in patient-derived cells with clinical genetics

    PMID:34570399

    Open questions at the time
    • Did not test rescue/complementation to formally prove causality
    • Mechanism by which the variant destabilizes the protein not structurally resolved
    • Tissue-specific basis of the syndrome (deafness, cardiomyopathy) not addressed
  2. 2022 Low

    Mapping a biallelic missense variant to the active site and linking biallelic SARS1 to microcephaly and brain anomalies extended the disease phenotype but rested only on structural inference of activity loss.

    Evidence Structural mapping of the variant onto SARS1 structure with biallelic-variant clinical genetics

    PMID:35790048

    Open questions at the time
    • No in vitro enzymatic assay reported to confirm the predicted activity reduction
    • Single lab, no functional rescue
    • Genotype-phenotype correlation across SARS1 patients not unified
  3. 2022 High

    Direct serylation and yeast complementation assays proved that a SARS1 splice variant causes loss of function with a dominant-negative effect and, critically, that this loss drives cellular senescence — connecting tRNA charging deficiency to a defined cellular phenotype.

    Evidence Yeast complementation, serylation assays in yeast and patient fibroblasts, beta-galactosidase staining, morphology, and SASP marker measurement

    PMID:36041817

    Open questions at the time
    • Molecular route from aminoacylation loss to senescence induction not delineated
    • Whether dominant-negative action reflects subunit poisoning not directly shown
    • In vivo organismal phenotype not modeled
  4. 2024 Medium

    Synthesis of prior primary data positioned SARS1 as a moonlighting protein beyond translation — coordinating tRNA modification, repressing VEGFA transcription in the nucleus, and binding telomeric DNA — defining a regulatory dimension to its biology.

    Evidence Review consolidating co-IP, nuclear localization, ChIP, post-translational modification, and interaction assays from prior studies

    PMID:38255739

    Open questions at the time
    • Corpus contains only the review abstract, not the underlying primary datasets
    • Signals controlling nuclear translocation versus cytosolic catalysis not fully mapped
    • Functional contribution of telomeric/VEGFA roles to the disease phenotype unestablished
  5. 2025 Low

    Demonstrating that SARS1 is a pan-essential protein degradable via the HPV E6 E3 ligase showed it can be exploited as a selective vulnerability in virus-positive cancer cells.

    Evidence VIPER-TAC targeted degradation in HPV-positive cervical cancer cells with viability readout

    PMID:40049166

    Open questions at the time
    • Proof-of-concept degradation only; does not characterize SARS1's own catalytic mechanism
    • Selectivity and off-target effects in non-cancer cells not detailed
    • Single-lab study

Open questions

Synthesis pass · forward-looking unresolved questions
  • How SARS1's non-canonical nuclear and telomeric functions are mechanistically coupled to — or separable from — its essential aminoacylation activity, and how each contributes to senescence and neurodevelopmental disease, remains unresolved.
  • No structural model linking active-site variants to dominant-negative subunit behavior
  • Direct primary evidence for VEGFA/telomere roles absent from this corpus
  • Causal chain from charging defect to senescence and tissue pathology undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0003723 RNA binding 2 GO:0016874 ligase activity 2 GO:0003677 DNA binding 1 GO:0140110 transcription regulator activity 1
Localization
GO:0005829 cytosol 2 GO:0005634 nucleus 1
Pathway
R-HSA-392499 Metabolism of proteins 2
Partners

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2022 A missense variant in SARS1 (p.Arg213Leu) located directly within the enzyme's active site likely diminishes seryl-tRNA synthetase aminoacylation activity, as demonstrated by structural mapping placing the variant at the active site; patients with biallelic SARS1 variants present with microcephaly, developmental delay, intellectual disability, and brain anomalies. Structural mapping of variant onto SARS1 protein structure; clinical genetics with biallelic variant identification Human mutation Low 35790048
2022 A de novo splice site deletion in SARS1 causing a 5-amino acid in-frame insertion near the active site results in loss-of-function with a dominant negative effect, as shown by complementation assays in S. cerevisiae and serylation assays in yeast and patient fibroblasts. Loss of SARS1 function causes cellular senescence, including abnormal cell shape, arrested division, increased beta-galactosidase staining, and elevated senescence-associated secretory phenotype markers (IL-6, p21, p16, p53). Yeast complementation assay; serylation (aminoacylation) activity assay in yeast and patient fibroblasts; beta-galactosidase staining; immunofluorescence/cell morphology; SASP marker measurement Journal of medical genetics High 36041817
2021 A biallelic missense variant in SARS1 (p.Arg213Leu) leads to protein instability, reduced protein level, and reduced enzymatic (seryl-tRNA synthetase) activity, causing a neurodevelopmental syndrome including developmental delay, central deafness, cardiomyopathy, and metabolic decompensation. Protein stability assessment; enzymatic activity assay for aminoacylation in patient-derived cells; clinical genetics Human mutation Medium 34570399
2024 Human cytosolic SARS1 (SerRS) interacts with m3C32 tRNA methyltransferases, coordinates tRNA modification and aminoacylation; when translocated to the nucleus, SerRS acts as a negative regulator of VEGFA gene expression by competing with transcription factors NFκB1 and c-Myc, forming complexes with YY1 and SIRT2. SerRS phosphorylation in hypoxia diminishes its binding to the VEGFA promoter, and nutrient deprivation triggers SerRS glycosylation that reduces its nuclear localization. SerRS also binds telomeric DNA and cooperates with shelterin protein POT1 to regulate telomere length and cellular senescence. Review/synthesis of prior experimental findings including co-immunoprecipitation, nuclear localization experiments, chromatin immunoprecipitation, post-translational modification studies (phosphorylation/glycosylation), and protein interaction assays (cited from primary literature reviewed) Life (Basel, Switzerland) Medium 38255739
2025 SARS1 (seryl-tRNA synthetase 1) is identified as a pan-essential target protein in the context of HPV-positive cancer cells; the HPV E6 viral E3 ubiquitin ligase can be used to degrade SARS1 via VIPER-TAC bifunctional molecules, selectively killing E6-expressing cancer cells. Targeted protein degradation (VIPER-TAC) in HPV-positive cervical cancer cell model; cell viability assay Cell chemical biology Low 40049166

Source papers

Stage 0 corpus · 27 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2021 SARS-CoV-2 and SARS-CoV Spike-Mediated Cell-Cell Fusion Differ in Their Requirements for Receptor Expression and Proteolytic Activation. Journal of virology 85 33608407
2021 SARS-CoV-2 Fusion Peptide has a Greater Membrane Perturbating Effect than SARS-CoV with Highly Specific Dependence on Ca2. Journal of molecular biology 55 33744314
2021 A novel highly quantitative and reproducible assay for the detection of anti-SARS-CoV-2 IgG and IgM antibodies. Scientific reports 50 33664294
2020 Genetic Hypothesis and Pharmacogenetics Side of Renin-Angiotensin-System in COVID-19. Genes 47 32899439
2021 Structural Comparison of the SARS CoV 2 Spike Protein Relative to Other Human-Infecting Coronaviruses. Frontiers in medicine 44 33585502
2022 Association of Cardiovascular Health Through Young Adulthood With Genome-Wide DNA Methylation Patterns in Midlife: The CARDIA Study. Circulation 42 35652342
2020 Standardization of enzyme-linked immunosorbent assays for serosurveys of the SARS-CoV-2 pandemic using clinical and at-home blood sampling. medRxiv : the preprint server for health sciences 36 32511472
2020 Consensus transcriptional regulatory networks of coronavirus-infected human cells. Scientific data 30 32963239
2023 Nanoparticle display of prefusion coronavirus spike elicits S1-focused cross-reactive antibody response against diverse coronavirus subgenera. Nature communications 23 37794071
2021 Genomic Feature Analysis of Betacoronavirus Provides Insights Into SARS and COVID-19 Pandemics. Frontiers in microbiology 21 33815307
2021 Towards Quantitative and Standardized Serological and Neutralization Assays for COVID-19. International journal of molecular sciences 17 33800363
2022 WARS1 and SARS1: Two tRNA synthetases implicated in autosomal recessive microcephaly. Human mutation 14 35790048
2022 RNA G-quadruplex forming regions from SARS-2, SARS-1 and MERS coronoviruses. Frontiers in chemistry 13 36479439
2022 IgG targeting distinct seasonal coronavirus- conserved SARS-CoV-2 spike subdomains correlates with differential COVID-19 disease outcomes. Cell reports 12 35617962
2025 VIPER-TACs leverage viral E3 ligases for disease-specific targeted protein degradation. Cell chemical biology 11 40049166
2022 Loss of seryl-tRNA synthetase (SARS1) causes complex spastic paraplegia and cellular senescence. Journal of medical genetics 10 36041817
2021 A bi-allelic loss-of-function SARS1 variant in children with neurodevelopmental delay, deafness, cardiomyopathy, and decompensation during fever. Human mutation 9 34570399
2021 Negatively charged residues in the membrane ordering activity of SARS-CoV-1 and -2 fusion peptides. Biophysical journal 9 34929193
2022 Comparison of the Old and New - Novel Mechanisms of Action for Anti-coronavirus Nucleoside Analogues. Chimia 6 38069712
2021 Emergence, evolution, and vaccine production approaches of SARS-CoV-2 virus: Benefits of getting vaccinated and common questions. Saudi journal of biological sciences 6 34924802
2024 Protein-Protein Interactions of Seryl-tRNA Synthetases with Emphasis on Human Counterparts and Their Connection to Health and Disease. Life (Basel, Switzerland) 5 38255739
2022 Nanoparticle display of prefusion coronavirus spike elicits S1-focused cross-reactive protection across divergent subgroups. Research square 2 36380759
2025 Binding of SARS-CoV-1/2 NSP1 to DNA Polymerase α-Primase Inhibits DNA Replication through Reduction of Interaction between DNA and DNA Polymerase α-Primase. Journal of chemical information and modeling 1 40737240
2021 A novel SARS-CoV-2 IgG line-blot for evaluating discrepant IgG test results - Observations in pre-pandemic and follow-up samples of five patients. Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi 1 33849809
2021 Critical Negatively Charged Residues Are Important for the Activity of SARS-CoV-1 and SARS-CoV-2 Fusion Peptides. bioRxiv : the preprint server for biology 0 34909776
2020 [Bats and humans]. Lakartidningen 0 32365214
2020 Consensus transcriptional regulatory networks of coronavirus-infected human cells. bioRxiv : the preprint server for biology 0 32511379

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