Affinage

RPS6KB2

Ribosomal protein S6 kinase beta-2 · UniProt Q9UBS0

Length
482 aa
Mass
53.5 kDa
Annotated
2026-06-10
16 papers in source corpus 4 papers cited in narrative 4 extracted findings
Cross-family judge vs UniProt: tie faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

RPS6KB2 (S6K2) is a kinase that acts as a pro-tumorigenic effector within PI3K/AKT signaling, where its expression and activity promote cancer cell proliferation, migration, and survival (PMID:40886264, PMID:38281249). In B-cell non-Hodgkin lymphoma, its transcription is directly activated by the transcription factor USF1 binding to its promoter, and its loss is rescued by AKT activation, placing RPS6KB2 upstream of the AKT/HDM2/p53 axis; knockdown reduces proliferation, migration, and tumor growth while promoting apoptosis (PMID:40886264). Consistent functional dependencies are observed in hepatocellular carcinoma, where knockdown suppresses proliferation, invasion, and migration and alters apoptotic (Bax/Bcl-2) and matrix-remodeling (MMP2/MMP9) markers while enhancing proinflammatory cytokine output (PMID:38281249). Beyond these phenotypic and transcriptional-regulatory observations, no direct biochemical characterization of RPS6KB2 substrates, catalytic mechanism, or structure is present in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2017 Low

    Established that rps6kb2 expression correlates spatiotemporally with active tissue transformation, providing the first developmental-context association for the gene.

    Evidence Genetic linkage mapping, qRT-PCR, and in situ hybridization in a Chinese tongue sole ortholog

    PMID:28779262

    Open questions at the time
    • Expression-only association in a fish ortholog with no functional manipulation
    • No demonstration of a causal role in metamorphosis
    • No connection to a defined signaling pathway
  2. 2024 Low

    Showed that RPS6KB2 is functionally required for cancer cell proliferation, invasion, and migration, framing it as a survival/migration driver rather than a passive marker.

    Evidence siRNA knockdown with EdU, wound-healing, Transwell, and apoptosis/migration marker western blots in hepatocellular carcinoma cells

    PMID:38281249

    Open questions at the time
    • Single knockdown approach with phenotypic readouts only
    • No direct mechanistic pathway linkage
    • Marker changes do not establish direct substrates or upstream regulators
  3. 2025 Medium

    Defined how RPS6KB2 is transcriptionally controlled and where it sits in oncogenic signaling, linking USF1-driven expression to the AKT/HDM2/p53 axis.

    Evidence Promoter analysis, RT-qPCR, IHC, siRNA knockdown, and AKT-activator (SC79) rescue with proliferation/migration/apoptosis assays in B-cell non-Hodgkin lymphoma

    PMID:40886264

    Open questions at the time
    • No in vitro reconstitution of the USF1–promoter interaction beyond binding inference
    • Connection to HDM2/p53 inferred from rescue rather than direct biochemistry
    • Kinase substrates mediating the phenotype not identified
  4. 2025 Low

    Placed RPS6KB2 as a downstream readout of a lncRNA-controlled PI3K/AKT feed-forward circuit, expanding its upstream regulatory context.

    Evidence RNA-seq, CyKILRb knockdown/overexpression, and PI3K/AKT inhibitor treatment with proliferation and clonogenic assays (preprint)

    PMID:bio_10.1101_2025.10.13.682173

    Open questions at the time
    • Preprint, not peer-reviewed
    • RPS6KB2 measured as a downstream readout without direct manipulation
    • Mechanism linking CyKILRb/PIK3R2 to RPS6KB2 expression unresolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • The direct biochemical activity of RPS6KB2 — its kinase substrates, catalytic regulation, and structural basis — remains uncharacterized in this corpus.
  • No substrate identified
  • No structural or biochemical kinase characterization
  • Pathway placement rests on rescue/correlative rather than direct enzymatic evidence

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Pathway
R-HSA-162582 Signal Transduction 2

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2025 USF1 transcription factor activates RPS6KB2 expression by directly binding to its promoter region; RPS6KB2 knockdown reduces cell proliferation, migration, and tumor growth while promoting apoptosis, and these effects are rescued by the AKT activator SC79, placing RPS6KB2 upstream of the AKT/HDM2/p53 signaling pathway in B-cell non-Hodgkin lymphoma. Bioinformatics promoter analysis, RT-qPCR, immunohistochemistry, western blot, siRNA knockdown, AKT activator rescue (SC79), functional proliferation/migration/apoptosis assays Human cell Medium 40886264
2024 RPS6KB2 knockdown in hepatocellular carcinoma cells reduces cell proliferation, invasion, and migration, and upregulates proinflammatory cytokines (as measured by Bax, Bcl-2, MMP2, MMP9, PCNA expression changes), supporting a role for RPS6KB2 in cancer cell survival and immune modulation. siRNA knockdown, EDU cell proliferation assay, wound healing assay, Transwell invasion assay, western blot for apoptosis/migration markers and proinflammatory factors Molecular biology reports Low 38281249
2017 In Chinese tongue sole (Cynoglossus semilaevis), rps6kb2 (an AGC kinase family member orthologous to mammalian RPS6KB2) maps to a metamorphosis-related quantitative trait locus; its expression peaks at metamorphic climax stage and is distributed in all tissues undergoing transformation (tail, jaw, eye, skin), suggesting a general role in tissue transformation during flatfish metamorphosis. Genetic linkage mapping, quantitative RT-PCR, whole-mount in situ hybridization Marine biotechnology (New York, N.Y.) Low 28779262
2025 In a lncRNA regulatory circuit, downregulation of CyKILRb causes loss of RPS6KB2 expression along with PIK3R2 and GNB2, while CyKILRb ectopic expression has the opposite effect, placing RPS6KB2 as a downstream effector of the CyKILRb→PIK3R2→PI3K→AKT axis in tumor promotion. Deep RNA sequencing, siRNA knockdown of CyKILRb, ectopic overexpression, PI3K/AKT inhibitor treatment, cell proliferation and clonogenic survival assays bioRxivpreprint Low bio_10.1101_2025.10.13.682173

Source papers

Stage 0 corpus · 16 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2010 Genetic variation in RPS6KA1, RPS6KA2, RPS6KB1, RPS6KB2, and PDK1 and risk of colon or rectal cancer. Mutation research 46 21035469
2021 NSUN6, an RNA methyltransferase of 5-mC controls glioblastoma response to temozolomide (TMZ) via NELFB and RPS6KB2 interaction. Cancer biology & therapy 32 34705606
2023 Biodegradation of p-hydroxybenzoic acid in Herbaspirillum aquaticum KLS-1 isolated from tailing soil: Characterization and molecular mechanism. Journal of hazardous materials 17 37236108
2022 Anti-Inflammatory Properties of KLS-13019: a Novel GPR55 Antagonist for Dorsal Root Ganglion and Hippocampal Cultures. Journal of molecular neuroscience : MN 11 35779192
2024 KLS-13019, a Novel Structural Analogue of Cannabidiol and GPR55 Receptor Antagonist, Prevents and Reverses Chemotherapy-Induced Peripheral Neuropathy in Rats. The Journal of pharmacology and experimental therapeutics 7 39134424
2023 Integrated transcriptome analysis identifies APPL1/RPS6KB2/GALK1 as immune-related metastasis factors in breast cancer. Open medicine (Warsaw, Poland) 3 37273920
2025 Nature-inspired designing of KLR- and KLS-rich antimicrobial peptides: unleashing the antibiofilm potential of RbP12 against MDR S. aureus and P. aeruginosa. The Journal of antimicrobial chemotherapy 2 40126541
2025 USF1-induced RPS6KB2 activation influences aggressive phenotype in B-cell non-Hodgkin lymphoma. Human cell 2 40886264
2024 Ribosomal protein S6 kinase 2 (RPS6KB2) is a potential immunotherapeutic target for cancer that upregulates proinflammatory cytokines. Molecular biology reports 2 38281249
2024 Knockdown siRNA Targeting GPR55 Reveals Significant Differences Between the Anti-inflammatory Actions of KLS-13019 and Cannabidiol. Journal of molecular neuroscience : MN 2 38602576
2023 Potential inhibitors of RPS6KB2 and NRF2 in head and neck squamous cell carcinoma. Journal of biomolecular structure & dynamics 2 37160694
2017 Locus Mapping, Molecular Cloning, and Expression Analysis of rps6kb2, a Novel Metamorphosis-Related Gene in Chinese Tongue Sole (Cynoglossus semilaevis). Marine biotechnology (New York, N.Y.) 2 28779262
2023 Sleep Disorder Kleine-Levin Syndrome (KLS) Joins the List of Polygenic Brain Disorders Associated with Obstetric Complications. Cellular and molecular neurobiology 1 37553546
2026 KLS-3021, a multifunctional oncolytic virus, demonstrates potent early-intervention efficacy in preclinical models of prostate-confined and locally advanced prostate cancer. Frontiers in oncology 0 41768263
2026 KLS-3021: Innovative oncolytic virotherapy for the treatment of advanced primary and metastatic cutaneous squamous cell carcinoma. Molecular therapy. Oncology 0 42005826
2024 Knockdown siRNA targeting GPR55 reveals significant differences between the anti-inflammatory actions of KLS-13019 and cannabidiol. Research square 0 38464007

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