Affinage

RAPSN

43 kDa receptor-associated protein of the synapse · UniProt Q13702

Length
412 aa
Mass
46.3 kDa
Annotated
2026-06-10
23 papers in source corpus 7 papers cited in narrative 7 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

RAPSN encodes rapsyn, a postsynaptic scaffolding protein essential for clustering nicotinic acetylcholine receptors (AChRs) at the neuromuscular junction (PMID:34033754). Rapsyn drives postsynaptic differentiation by undergoing liquid-liquid phase separation through multivalent interactions of its tetratricopeptide repeat (TPR) domains, forming liquid-like condensates that recruit AChRs along with cytoskeletal and signaling proteins; this condensation is enhanced by MuSK signaling (PMID:34033754). Self-association and co-clustering depend on intact TPR architecture, and a mutation in the TPR6 domain disrupts these functions in CMS patients (PMID:34033754, PMID:22326364). RAPSN transcription in muscle is governed by E-box elements in its promoter that bind the myogenic transcription factors MyoD and myogenin; promoter mutations reduce transcriptional output (PMID:12651869). Loss-of-function mutations span the regulatory and coding sequence — promoter E-box, splice-site, missense, and frameshift alleles — and produce a severity spectrum in which incomplete loss of function causes congenital myasthenic syndrome while complete loss causes lethal fetal akinesia (PMID:12651869, PMID:16931511, PMID:18179903). Missense mutations such as R164C and L283P specifically impair co-clustering of AChR with rapsyn (PMID:16931511).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 1994 Medium

    Establishing the genomic structure of the gene was the first step in defining the protein's domain organization and enabling later mutation analysis.

    Evidence Genomic cloning, RNase protection, and genetic mapping of the mouse Rapsn gene

    PMID:7698761

    Open questions at the time
    • Did not address protein function or AChR clustering
    • Mouse gene only; human locus not yet defined
  2. 1996 Medium

    Cloning the human cDNA and mapping the locus provided the reagents and chromosomal position needed to link the gene to human disease.

    Evidence cDNA cloning/sequencing and radiation hybrid mapping placing RAPSN at 11p11.2-p11.1

    PMID:8812503

    Open questions at the time
    • No functional assay of the human protein
    • No disease association established yet
  3. 2003 High

    It was unknown how RAPSN transcription is controlled; this work showed E-box promoter elements bound by myogenic factors drive expression and that promoter mutations cause disease.

    Evidence EMSA, luciferase reporter assays in C2C12 myotubes/HEK with MyoD/myogenin, and patient allele transcription analysis

    PMID:12651869

    Open questions at the time
    • Did not quantify how reduced transcription maps to clinical severity
    • Other promoter/enhancer elements not excluded
  4. 2006 Medium

    To connect coding mutations to molecular dysfunction, missense and splice mutations were shown to impair AChR co-clustering or generate frameshift transcripts.

    Evidence Minigene splicing analysis and AChR-rapsyn co-clustering assays of mutant constructs

    PMID:16931511

    Open questions at the time
    • Single-lab cellular assay
    • Mechanism of clustering loss at protein level not defined
  5. 2008 Medium

    The relationship between mutation severity and phenotype was unresolved; a frameshift allele established that complete loss of function causes lethal fetal akinesia versus milder congenital myasthenia for partial loss.

    Evidence Direct sequencing, familial segregation, and patient-sample functional studies in a fetal akinesia family

    PMID:18179903

    Open questions at the time
    • Functional studies incompletely described
    • Quantitative genotype-phenotype boundary not defined
  6. 2012 Low

    A TPR6-domain mutation in CMS patients implicated this domain in rapsyn self-association and AChR co-clustering.

    Evidence Genetic sequencing with functional role inferred from domain localization in compound heterozygosity

    PMID:22326364

    Open questions at the time
    • No direct in vitro or cellular assay of TPR6 function performed
    • Compound heterozygosity confounds attribution to single allele
  7. 2021 High

    The physical mechanism of AChR clustering was unresolved; this work showed rapsyn forms phase-separated condensates via multivalent TPR interactions that recruit AChRs and that CMS mutations disrupt this LLPS in vitro and in mice.

    Evidence In vitro LLPS and co-condensation assays, TPR mutagenesis, MuSK signaling modulation, and a transgenic mouse carrying an LLPS-deficient CMS mutation

    PMID:34033754

    Open questions at the time
    • Stoichiometry and composition of in vivo condensates not fully defined
    • Mechanistic link between MuSK signaling and condensate enhancement incompletely mapped

Open questions

Synthesis pass · forward-looking unresolved questions
  • How rapsyn condensate composition and dynamics are regulated across development and how the full spectrum of CMS alleles quantitatively maps to LLPS defects remain open.
  • No structural model of TPR-mediated multivalency reported in the corpus
  • Quantitative coupling of LLPS impairment to clinical severity not established

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 2
Localization
GO:0005886 plasma membrane 1
Pathway
R-HSA-112316 Neuronal System 1 R-HSA-1266738 Developmental Biology 1
Partners

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2021 Rapsyn undergoes liquid-liquid phase separation (LLPS) to form liquid-like condensates that recruit acetylcholine receptors (AChRs), cytoskeletal proteins, and signaling proteins for postsynaptic differentiation at the neuromuscular junction. LLPS requires multivalent binding of tetratricopeptide repeat (TPR) domains and is enhanced by MuSK signaling. CMS-associated mutations compromise Rapsyn LLPS and co-condensation with interaction partners, and mice carrying a CMS-associated LLPS-deficient mutation show impaired NMJ formation. In vitro LLPS assays, co-condensation experiments, mutagenesis of TPR domains, MuSK signaling modulation, transgenic mouse model with LLPS-deficient CMS mutation Neuron High 34033754
2003 Two E-box mutations in the RAPSN promoter region (-27C→G and -38A→G) reduce transcriptional activity of the RAPSN promoter. The -27C→G mutation abolishes transcription from the mutant allele and reduces binding of myogenic transcription factors (MyoD/myogenin), while -38A→G alters binding affinity for nuclear extract components and attenuates reporter expression in myotubes. The major transcriptional start site was mapped to 172 nucleotides upstream of the translational start. Electrophoretic mobility shift assay (EMSA), luciferase reporter assay in C2C12 myotubes and HEK cells transfected with MyoD/myogenin, haplotype analysis, transcript analysis from patient muscle Human molecular genetics High 12651869
2006 RAPSN missense mutations R164C and L283P diminish co-clustering of AChR with rapsyn as shown by co-transfection of wild-type AChR subunits with mutant RAPSN constructs. A splice mutation (IVS1-15C>A) generates a novel acceptor splice site causing retention of 13 nucleotides of intron 1, leading to a frameshift transcript. RAPSN minigene transfection and RNA analysis for splice mutation; co-transfection of AChR subunits with mutant RAPSN constructs and co-clustering assay for missense mutations Neurology Medium 16931511
1994 The mouse Rapsn gene spans 12 kb, consists of 8 exons, and the exon/intron organization is consistent with structural domains predicted from amino acid sequence conservation. The gene was mapped to the central region of mouse chromosome 2. Genomic cloning, RNase protection assay, sequence analysis of intron/exon boundaries, genetic mapping Genomics Medium 7698761
1996 Human rapsyn cDNA encodes a 412-amino-acid protein with predicted molecular mass of 46,330 Da, showing 96% sequence identity with mouse rapsyn. The human RAPSN gene locus was mapped to chromosome 11p11.2-p11.1. cDNA cloning and sequencing, PCR from somatic cell hybrids and radiation hybrids for chromosomal mapping Genomics Medium 8812503
2008 A homozygous RAPSN frameshift mutation (c.1177-1178delAA) was identified in a family with lethal fetal akinesia, demonstrating that severe (complete) loss of rapsyn function causes lethal fetal akinesia, while incomplete loss of function causes congenital myasthenia, establishing a genotype-severity relationship. Mutation analysis (direct sequencing), functional studies in patient samples, familial segregation analysis American journal of human genetics Medium 18179903
2012 A novel mutation (p.224insT) in the TPR6 domain of RAPSN was identified in CMS patients, providing evidence that the TPR6 domain is important for rapsyn self-association and co-clustering with AChR at the postsynaptic membrane. Genetic sequencing; functional implication inferred from domain localization of mutation in compound heterozygosity with known E-box promoter mutation Journal of the neurological sciences Low 22326364

Source papers

Stage 0 corpus · 23 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2008 Mutation analysis of CHRNA1, CHRNB1, CHRND, and RAPSN genes in multiple pterygium syndrome/fetal akinesia patients. American journal of human genetics 81 18179903
2003 E-box mutations in the RAPSN promoter region in eight cases with congenital myasthenic syndrome. Human molecular genetics 77 12651869
2004 Novel truncating RAPSN mutations causing congenital myasthenic syndrome responsive to 3,4-diaminopyridine. Neuromuscular disorders : NMD 37 15036330
2015 Long-term follow-up in patients with congenital myasthenic syndrome due to RAPSN mutations. Neuromuscular disorders : NMD 31 26782015
2016 DNA methylation array analysis identifies breast cancer associated RPTOR, MGRN1 and RAPSN hypomethylation in peripheral blood DNA. Oncotarget 30 27577081
2006 Impaired receptor clustering in congenital myasthenic syndrome with novel RAPSN mutations. Neurology 29 16931511
2016 Limb girdle myasthenia with digenic RAPSN and a novel disease gene AK9 mutations. European journal of human genetics : EJHG 18 27966543
2017 Massive parallel sequencing identifies RAPSN and PDHA1 mutations causing fetal akinesia deformation sequence. European journal of paediatric neurology : EJPN : official journal of the European Paediatric Neurology Society 17 28495245
2021 Membraneless condensates by Rapsn phase separation as a platform for neuromuscular junction formation. Neuron 16 34033754
2020 The Association Between RAPSN Methylation in Peripheral Blood and Early Stage Lung Cancer Detected in Case-Control Cohort. Cancer management and research 16 33173339
1996 Cloning of cDNA encoding human rapsyn and mapping of the RAPSN gene locus to chromosome 11p11.2-p11.1. Genomics 16 8812503
2018 Clinical variability of early-onset congenital myasthenic syndrome due to biallelic RAPSN mutations in Brazil. Neuromuscular disorders : NMD 14 30266223
2010 Identification of previously unreported mutations in CHRNA1, CHRNE and RAPSN genes in three unrelated Italian patients with congenital myasthenic syndromes. Journal of neurology 14 20157724
2011 Investigation for RAPSN and DOK-7 mutations in a cohort of seronegative myasthenia gravis patients. Muscle & nerve 13 21305573
2012 A novel mutation in the TPR6 domain of the RAPSN gene associated with congenital myasthenic syndrome. Journal of the neurological sciences 10 22326364
2010 Multiexon deletions account for 15% of congenital myasthenic syndromes with RAPSN mutations after negative DNA sequencing. Journal of medical genetics 9 20930056
1994 Characterization and mapping of the Rapsn gene encoding the 43-kDa acetylcholine receptor-associated protein. Genomics 8 7698761
2021 The association between RAPSN methylation in peripheral blood and breast cancer in the Chinese population. Journal of human genetics 5 33958711
2019 No Hot Spot Mutations CHRNE c.1327 delG, CHAT c.914T>C, and RAPSN c.264C>A in Iranian Patients with Congenital Myasthenic Syndrome. Iranian journal of child neurology 3 31037086
2021 Clustering acetylcholine receptors in neuromuscular junction by phase-separated Rapsn condensates. Neuron 2 34139178
2021 Generation and characterization of an induced pluripotent stem cell line SDQLCHi018-A from a congenital myasthenic syndrome patient carrying compound heterozygote mutations in RAPSN gene. Stem cell research 1 33465529
2026 Late diagnosis of RAPSN mutation-associated congenital myasthenic syndrome with obstructive sleep apnea in a 5-year-old girl. BMC pediatrics 0 42237298
2024 Clinical and genetic diversity in Iranian individuals with RAPSN-related congenital myasthenic syndrome. Neurogenetics 0 39589458

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