Affinage

PRRC1

Protein PRRC1 · UniProt Q96M27

Length
445 aa
Mass
46.7 kDa
Annotated
2026-06-10
6 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PRRC1 is a cytosolic accessory factor that operates at multiple steps of the secretory pathway. At ER exit sites it is recruited to the inner COPII coat and limits COPII membrane association, thereby tuning anterograde ER-to-Golgi transport (PMID:34433667). At the trans-Golgi network it acts as an essential cytosolic regulator of AP-4-mediated vesicle biogenesis, functioning independently of clathrin to support AP-4-dependent export (PMID:41032520). Beyond trafficking, loss of PRRC1 in glioblastoma cells impairs proliferation, clonogenic survival, and anchorage-independent growth and elevates γ-H2AX under genotoxic stress, linking PRRC1 to proliferative fitness and the DNA damage response in these cells (PMID:41932066). A t(5;11) chromosomal translocation can fuse PRRC1 in-frame to MLL (KMT2A) in secondary acute lymphoblastic leukemia (PMID:25205603). The molecular basis connecting PRRC1's trafficking functions to its DNA-damage and oncogenic roles has not been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2014 Medium

    Before any biochemical function was known, characterizing a leukemia breakpoint established that the PRRC1 locus can be rearranged, identifying it as an MLL fusion partner.

    Evidence Banding cytogenetics, FISH, and LDI-PCR breakpoint mapping in a secondary ALL patient case

    PMID:25205603

    Open questions at the time
    • Single patient case; recurrence not established
    • No functional test of the 5'MLL-3'PRRC1 fusion protein
    • Does not address normal PRRC1 cellular function
  2. 2021 High

    The first mechanistic assignment placed PRRC1 at ER exit sites as a regulator of COPII, answering what cellular process it participates in.

    Evidence In vitro vesicle formation assay, quantitative MS, co-IP, and siRNA knockdown reading out COPII membrane association

    PMID:34433667

    Open questions at the time
    • Precise binding interface within the inner COPII coat not defined
    • Structural basis for negative regulation of COPII membrane association unresolved
  3. 2025 High

    Extending its trafficking role, PRRC1 was shown to be required at a distinct compartment, the TGN, as an accessory factor for AP-4 vesicle biogenesis.

    Evidence In vitro vesicle formation assay in AP4ε-deficient HeLa cells with label-free quantitative MS and genetic epistasis

    PMID:41032520

    Open questions at the time
    • Direct physical contact between PRRC1 and AP-4 not structurally defined
    • Whether the COPII and AP-4 roles share a common biochemical activity is unknown
  4. 2025 Low

    A Golgi colocalization observation tentatively extended PRRC1 into cargo glycosylation, raising whether it influences MUC5AC processing.

    Evidence Co-localization/interaction assay in LUAD cells within a study focused on ST6GalNAc-I

    PMID:40371640

    Open questions at the time
    • Single co-localization observation without functional validation
    • No reciprocal or biochemical confirmation of the interaction
    • Role in MUC5AC glycosylation is inferred, not demonstrated
  5. 2026 Medium

    Loss-of-function studies connected PRRC1 to cancer cell fitness and stress adaptation, beyond its trafficking roles.

    Evidence shRNA knockdown in U87 and patient-derived GBM cells with clonogenic, anchorage-independent growth, spheroid, and γ-H2AX assays under genotoxic stress

    PMID:41932066

    Open questions at the time
    • No direct biochemical mechanism linking PRRC1 to the DNA damage response
    • Single-lab finding without orthogonal genetic validation
    • Whether the DDR phenotype is secondary to trafficking defects is unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unknown what unifying molecular activity allows PRRC1 to act at both COPII and AP-4 vesicle steps and whether this relates to its proliferative and DNA-damage roles in cancer.
  • No defined catalytic or adaptor activity established
  • No structural model of PRRC1 or its interaction interfaces
  • Mechanistic link between trafficking function and DDR/oncogenic phenotypes absent

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 2
Localization
GO:0005829 cytosol 2 GO:0005783 endoplasmic reticulum 1 GO:0005794 Golgi apparatus 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 2
Partners

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2021 PRRC1 is recruited to endoplasmic reticulum (ER) exit sites, interacts with the inner COPII coat, and its absence increases membrane association of COPII, indicating PRRC1 regulates anterograde ER-to-Golgi trafficking. In vitro vesicle formation assay, quantitative mass spectrometry, co-immunoprecipitation/interaction assay, siRNA knockdown with COPII membrane association readout Proceedings of the National Academy of Sciences of the United States of America High 34433667
2025 PRRC1 acts as a cytosolic regulator essential for AP-4-mediated trans-Golgi network (TGN) export, functioning as an accessory factor for AP-4 vesicle biogenesis independently of clathrin. In vitro vesicle formation assay using AP4ε-deficient HeLa cells, label-free quantitative mass spectrometry, functional validation of PRRC1 requirement for AP-4-dependent trafficking Proceedings of the National Academy of Sciences of the United States of America High 41032520
2014 PRRC1 can serve as a fusion partner for MLL (KMT2A) in secondary acute lymphoblastic leukemia, producing an in-frame 5'MLL–3'PRRC1 fusion transcript resulting from a t(5;11)(q23-31;q23) chromosomal translocation. Banding cytogenetics, FISH, long-distance inverse PCR (LDI-PCR) to identify the fusion breakpoint Leukemia research Medium 25205603
2026 shRNA-mediated knockdown of PRRC1 in GBM cells reduces proliferation, clonogenic survival, anchorage-independent growth, and 3D spheroid formation; under genotoxic stress, PRRC1-deficient cells show enhanced γ-H2AX accumulation, indicating PRRC1 supports DNA damage response and stress-adaptive programs in glioblastoma cells. shRNA knockdown in U87 and patient-derived GBM cells, clonogenic survival assay, γ-H2AX immunofluorescence under genotoxic stress, 3D spheroid assay DNA repair Medium 41932066
2025 MUC5AC interacts and colocalizes with PRRC1 in the Golgi, suggesting a role for PRRC1 in MUC5AC glycosylation. Co-localization/interaction assay (biochemical/proteomic analysis) in LUAD cells The Journal of clinical investigation Low 40371640

Source papers

Stage 0 corpus · 6 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2021 An in vitro vesicle formation assay reveals cargo clients and factors that mediate vesicular trafficking. Proceedings of the National Academy of Sciences of the United States of America 40 34433667
2025 ST6GalNAc-I regulates tumor cell sialylation via NECTIN2/MUC5AC-mediated immunosuppression and angiogenesis in non-small cell lung cancer. The Journal of clinical investigation 11 40371640
2014 MLL partner genes in secondary acute lymphoblastic leukemia: report of a new partner PRRC1 and review of the literature. Leukemia research 6 25205603
2013 Complex variation in measures of general intelligence and cognitive change. PloS one 6 24349040
2026 Single-cell transcriptomics reveal PRRC1 as a malignant cell enriched driver of DNA repair and therapy resistance in glioblastoma. DNA repair 1 41932066
2025 Uncovering cargo clients and accessory factors of AP-1 and AP-4 through vesicle proteomics. Proceedings of the National Academy of Sciences of the United States of America 1 41032520

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