Affinage

PRRC1

Protein PRRC1 · UniProt Q96M27

Round 2 corrected
Length
445 aa
Mass
46.7 kDa
Annotated
2026-04-28
36 papers in source corpus 3 papers cited in narrative 3 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PRRC1 is a proline-rich cytosolic protein that localizes to ER exit sites and the trans-Golgi network, where it regulates vesicular trafficking at two distinct stations: it interacts with the inner COPII coat to negatively regulate COPII membrane association during ER-to-Golgi transport (PMID:34433667), and it functions as an accessory factor for AP-4-mediated export from the TGN (PMID:41032520). In glioblastoma cells, PRRC1 depletion impairs proliferation and clonogenic survival and enhances γ-H2AX accumulation under genotoxic stress, indicating an additional role in supporting DNA damage tolerance and stress-adaptive fitness (PMID:41932066).

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2021 High

    The first mechanistic role for PRRC1 was established at ER exit sites, resolving how a previously uncharacterized proline-rich protein participates in COPII-dependent anterograde trafficking by acting as a negative regulator of COPII coat membrane association.

    Evidence In vitro vesicle formation assay with quantitative mass spectrometry, co-immunoprecipitation for COPII inner coat interaction, PRRC1 depletion showing increased COPII membrane association, and fluorescence microscopy in mammalian cells

    PMID:34433667

    Open questions at the time
    • Structural basis of PRRC1–COPII inner coat interaction is unknown
    • Whether PRRC1 acts catalytically or as a stoichiometric competitor for COPII binding sites is unresolved
    • Cargo specificity of PRRC1-regulated COPII vesicles has not been defined
  2. 2025 High

    PRRC1 was shown to operate at a second trafficking station—the trans-Golgi network—where it serves as an essential cytosolic accessory factor for AP-4-mediated vesicle biogenesis, extending its role beyond ER exit sites.

    Evidence In vitro vesicle formation assay in AP-4ε-deficient HeLa cells reconstituted with wild-type conditions, label-free quantitative mass spectrometry identification, and functional depletion confirming loss of AP-4-mediated TGN export

    PMID:41032520

    Open questions at the time
    • Direct binding interface between PRRC1 and AP-4 coat components has not been mapped
    • Whether PRRC1 performs analogous negative regulatory functions at the TGN as at ERES, or a distinct activating role, is unclear
    • Relationship between PRRC1's COPII-regulatory and AP-4-regulatory functions (shared or independent pools) is unknown
  3. 2026 Medium

    Beyond vesicular trafficking, PRRC1 was found to support proliferative and stress-adaptive programs in glioblastoma cells, with its loss enhancing DNA damage signaling burden under genotoxic stress, raising the question of whether its trafficking functions feed into genome maintenance indirectly.

    Evidence shRNA-mediated knockdown in U87 and patient-derived GBM lines; clonogenic, anchorage-independent growth, and spheroid assays; γ-H2AX immunofluorescence under genotoxic stress; transcriptomic pathway enrichment

    PMID:41932066

    Open questions at the time
    • Mechanistic link between PRRC1's trafficking role and DNA damage tolerance is not established—cancer phenotypes rely on bioinformatic enrichment rather than direct biochemical evidence
    • Whether PRRC1 acts on chromatin directly or influences DNA damage response indirectly through trafficking-dependent signaling is unknown
    • Findings have not been replicated outside glioblastoma cell models

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unknown how PRRC1's dual trafficking roles at ERES and the TGN are coordinated, whether its proline-rich domain mediates both COPII and AP-4 interactions through shared or distinct binding interfaces, and whether the cancer-associated phenotypes arise from trafficking dysfunction or a separate nuclear function.
  • No structural information exists for PRRC1 or its complexes
  • In vivo phenotypes in animal models have not been reported
  • Whether PRRC1 directly participates in chromatin or DNA repair processes has not been tested biochemically

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 2
Localization
GO:0005829 cytosol 2 GO:0005783 endoplasmic reticulum 1 GO:0005794 Golgi apparatus 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 2 R-HSA-9609507 Protein localization 2

Evidence

Reading pass · 3 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2021 PRRC1 is a cytosolic, proline-rich domain-containing protein that is recruited to ER exit sites (ERES), where it interacts with the inner COPII coat. Its absence increases membrane association of COPII, indicating that PRRC1 negatively regulates COPII coat assembly or membrane retention, thereby modulating anterograde trafficking from the ER. In vitro vesicle formation assay coupled with quantitative mass spectrometry; co-immunoprecipitation to confirm COPII inner coat interaction; PRRC1 depletion with measurement of COPII membrane association; fluorescence microscopy for ERES localization Proceedings of the National Academy of Sciences of the United States of America High 34433667
2025 PRRC1 and WDR44 function as cytosolic regulators essential for AP-4-mediated export from the trans-Golgi network (TGN), identifying PRRC1 as an accessory factor for AP-4 vesicle biogenesis. In vitro vesicle formation assay using AP4ε-deficient HeLa cells reconstituted with wild-type conditions, coupled with label-free quantitative mass spectrometry to identify PRRC1 as enriched in AP-4-dependent vesicles; functional validation through depletion showing loss of AP-4-mediated TGN export Proceedings of the National Academy of Sciences of the United States of America High 41032520
2026 PRRC1 supports proliferative and stress-adaptive transcriptional states in glioblastoma (GBM) cells. shRNA-mediated knockdown in U87 and patient-derived GBM cells reduced proliferation, clonogenic survival, anchorage-independent growth, and 3D spheroid formation. Under genotoxic stress, PRRC1-deficient cells showed enhanced γ-H2AX accumulation, indicating that PRRC1 reduces DNA damage signaling burden and promotes stress tolerance, functionally linking PRRC1 to chromatin organization, cell-cycle regulation, and DNA damage response pathways. shRNA-mediated knockdown in U87 and patient-derived GBM cell lines; clonogenic survival assay; anchorage-independent growth assay; 3D spheroid formation assay; γ-H2AX immunofluorescence under genotoxic stress; gene set enrichment analysis and MetaCore pathway enrichment for functional annotation DNA repair Medium 41932066

Source papers

Stage 0 corpus · 36 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2014 A proteome-scale map of the human interactome network. Cell 977 25416956
2003 Complete sequencing and characterization of 21,243 full-length human cDNAs. Nature genetics 754 14702039
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2021 Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV. Nature 532 33845483
2022 OpenCell: Endogenous tagging for the cartography of human cellular organization. Science (New York, N.Y.) 432 35271311
2010 Systematic analysis of human protein complexes identifies chromosome segregation proteins. Science (New York, N.Y.) 421 20360068
2005 Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome research 409 16344560
2015 Panorama of ancient metazoan macromolecular complexes. Nature 407 26344197
2012 A high-throughput approach for measuring temporal changes in the interactome. Nature methods 273 22863883
2011 Next-generation sequencing to generate interactome datasets. Nature methods 200 21516116
2005 WW domains provide a platform for the assembly of multiprotein networks. Molecular and cellular biology 184 16055720
2009 Ubiquitin-mediated proteolysis of HuR by heat shock. The EMBO journal 142 19322201
2011 Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. The Journal of biological chemistry 131 21832049
2021 SARS-CoV-2-host proteome interactions for antiviral drug discovery. Molecular systems biology 86 34709727
2015 Quantitative interaction proteomics of neurodegenerative disease proteins. Cell reports 86 25959826
2020 Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains. Cell reports 79 32814053
2019 The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis. Nature communications 74 31586073
2021 Histone deacetylase inhibitors inhibit cervical cancer growth through Parkin acetylation-mediated mitophagy. Acta pharmaceutica Sinica. B 66 35256949
2022 Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery. Nature communications 65 35831314
2022 Proteome-scale mapping of binding sites in the unstructured regions of the human proteome. Molecular systems biology 61 35044719
2023 A central chaperone-like role for 14-3-3 proteins in human cells. Molecular cell 54 36931259
2021 Competitive binding of E3 ligases TRIM26 and WWP2 controls SOX2 in glioblastoma. Nature communications 51 34732716
2015 The variant Polycomb Repressor Complex 1 component PCGF1 interacts with a pluripotency sub-network that includes DPPA4, a regulator of embryogenesis. Scientific reports 44 26687479
2021 An in vitro vesicle formation assay reveals cargo clients and factors that mediate vesicular trafficking. Proceedings of the National Academy of Sciences of the United States of America 38 34433667
2020 Mutual regulation between OGT and XIAP to control colon cancer cell growth and invasion. Cell death & disease 36 32994395
2016 An inter-species protein-protein interaction network across vast evolutionary distance. Molecular systems biology 36 27107014
2021 An antibody-based proximity labeling map reveals mechanisms of SARS-CoV-2 inhibition of antiviral immunity. Cell chemical biology 35 34672954
2025 ST6GalNAc-I regulates tumor cell sialylation via NECTIN2/MUC5AC-mediated immunosuppression and angiogenesis in non-small cell lung cancer. The Journal of clinical investigation 11 40371640
2014 MLL partner genes in secondary acute lymphoblastic leukemia: report of a new partner PRRC1 and review of the literature. Leukemia research 6 25205603
2013 Complex variation in measures of general intelligence and cognitive change. PloS one 6 24349040
2026 Single-cell transcriptomics reveal PRRC1 as a malignant cell enriched driver of DNA repair and therapy resistance in glioblastoma. DNA repair 0 41932066
2025 Uncovering cargo clients and accessory factors of AP-1 and AP-4 through vesicle proteomics. Proceedings of the National Academy of Sciences of the United States of America 0 41032520