Affinage

PRIM2

DNA primase large subunit · UniProt P49643

Length
509 aa
Mass
58.8 kDa
Annotated
2026-06-10
10 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PRIM2 encodes the 58-kDa large subunit of the human DNA primase heterodimer (p49/p58), which synthesizes oligoribonucleotide primers required to initiate DNA replication and Okazaki fragment synthesis during lagging-strand replication (PMID:8530050). Consistent with this replicative role, PRIM2 expression is governed by the p53/RB/E2F axis—loss of p53 elevates PRIM2, E2F positively correlates with its expression, and PRIM2 depletion arrests the cell cycle, raises DNA damage, and drives senescence to curtail proliferation (PMID:35884433). Its abundance is further set translationally, as leucyl-tRNA synthetase (LARS) promotes leucine-dependent PRIM2 protein synthesis to activate DNA replication and cell cycle progression (PMID:41832550). Beyond replication, PRIM2 supports tumor cell survival and growth through additional routes: its loss depletes GSH and SLC7A11 and elevates lipid ROS, triggering ferroptosis (PMID:33149601), and it physically interacts with and stabilizes FAM111B to engage PI3K/AKT signaling and EMT (PMID:39556158).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 1995 High

    Established the core identity of PRIM2 by defining it as the p58 large subunit of the DNA primase heterodimer responsible for priming DNA synthesis.

    Evidence Chromosomal mapping and biochemical characterization of primase subunit composition

    PMID:8530050

    Open questions at the time
    • Does not resolve the catalytic vs. regulatory contribution of p58 within the heterodimer
    • No structural detail on primer length control or polymerase handoff from this entry
  2. 2020 Medium

    Linked PRIM2 to redox/cell-death control, showing its loss induces ferroptosis rather than acting purely as a replicative housekeeping factor.

    Evidence siRNA knockdown in lung cancer cells with GSH, lipid ROS, MDA assays, SLC7A11/β-catenin Western blot, colony formation, and xenograft

    PMID:33149601

    Open questions at the time
    • Mechanism connecting primase subunit loss to SLC7A11 downregulation is not defined
    • Single lab; whether ferroptosis is secondary to replication stress is unresolved
  3. 2022 Medium

    Placed PRIM2 within the p53/RB/E2F regulatory circuit and tied its depletion to cell cycle arrest, DNA damage, and senescence, explaining its proliferative role.

    Evidence siRNA knockdown with cell cycle/DNA damage/senescence assays plus p53 mutation/deletion analysis and E2F correlation in lung cancer cells

    PMID:35884433

    Open questions at the time
    • Direct E2F binding to the PRIM2 promoter not demonstrated
    • Single lab; causal hierarchy between DNA damage and senescence not separated
  4. 2024 Medium

    Identified a physical PRIM2 partner (FAM111B), revealing a signaling function beyond replication via PI3K/AKT and EMT.

    Evidence Co-immunoprecipitation, protein stability and RT-qPCR assays, proliferation/migration assays, and xenograft in pancreatic ductal adenocarcinoma

    PMID:39556158

    Open questions at the time
    • Single Co-IP without reciprocal/structural validation of the interaction interface
    • How PRIM2 stabilizes FAM111B mechanistically is unknown
  5. 2026 Medium

    Demonstrated translational control of PRIM2 by LARS, showing nutrient (leucine) availability gates PRIM2 synthesis and downstream DNA replication.

    Evidence SILAC measurement of leucine-dependent PRIM2 synthesis, transcriptome/proteome profiling, LARS/PRIM2 perturbation, and functional assays in osteosarcoma

    PMID:41832550

    Open questions at the time
    • Molecular intermediary linking LARS leucine sensing to PRIM2 mRNA translation not identified
    • Single lab; generality across tissues untested

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the canonical primase activity of PRIM2 mechanistically connects to its reported roles in ferroptosis suppression and PI3K/AKT-EMT signaling remains unresolved.
  • No structural model of PRIM2 in any human study within the corpus
  • Whether non-replicative phenotypes are direct or secondary to replication stress is unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140098 catalytic activity, acting on RNA 1
Pathway
R-HSA-1640170 Cell Cycle 1 R-HSA-69306 DNA Replication 1
Partners
Complex memberships
DNA primase (p49/p58 heterodimer)

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1995 PRIM2 (p58 subunit) is a component of the human DNA primase heterodimer (p49/p58), which catalyzes synthesis of oligoribonucleotide primers essential for initiation of DNA replication and Okazaki fragment synthesis during lagging strand replication. Chromosomal mapping and biochemical characterization of primase subunit composition Genomics High 8530050
2022 PRIM2 expression is regulated by the p53/RB pathway in lung cancer cells: mutation or deletion of p53 increases PRIM2 expression, and the transcription factor E2F (whose cellular localization is controlled by the p53/RB pathway) positively correlates with PRIM2 expression. Knockdown of PRIM2 induces cell cycle arrest, increases DNA damage, and increases cellular senescence, reducing lung cancer cell proliferation. siRNA knockdown of PRIM2 with cell cycle analysis, DNA damage markers, senescence assays; database analysis of E2F/CDK correlation; p53 mutation/deletion in cell lines with Western blot Cancers Medium 35884433
2020 Loss of PRIM2 in lung cancer cells reduces GSH levels, increases cellular lipid ROS and mitochondrial MDA, and downregulates SLC7A11 and β-catenin expression, thereby inducing ferroptosis and inhibiting proliferation. siRNA knockdown of PRIM2, GSH measurement, lipid ROS and MDA assays, Western blot for SLC7A11 and β-catenin, colony formation assay, in vivo xenograft OncoTargets and therapy Medium 33149601
2024 PRIM2 physically interacts with FAM111B (by Co-IP) and upregulates FAM111B at both the RNA and protein stability level; this PRIM2/FAM111B axis promotes proliferation and migration in pancreatic ductal adenocarcinoma by modulating PI3K/AKT signaling and EMT markers. Co-immunoprecipitation, protein stability assays, Western blot, RT-qPCR, cell proliferation/migration assays, xenograft model Medical oncology Medium 39556158
2026 LARS (Leucyl-tRNA synthetase) promotes PRIM2 protein synthesis through leucine-dependent translational control (SILAC-based measurement of leucine-dependent PRIM2 synthesis), activating DNA replication and cell cycle progression in osteosarcoma cells. SILAC stable isotope labeling, transcriptome sequencing, proteomic profiling, LARS/PRIM2 overexpression and knockdown, MTT/colony/EdU/flow cytometry assays, xenograft model Journal of experimental & clinical cancer research Medium 41832550

Source papers

Stage 0 corpus · 10 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2020 Dihydroartemisinin Inhibits the Proliferation, Colony Formation and Induces Ferroptosis of Lung Cancer Cells by Inhibiting PRIM2/SLC7A11 Axis. OncoTargets and therapy 98 33149601
1995 Assignment of the 49-kDa (PRIM1) and 58-kDa (PRIM2A and PRIM2B) subunit genes of the human DNA primase to chromosome bands 1q44 and 6p11.1-p12. Genomics 30 8530050
2021 Curcumin restrains hepatocellular carcinoma progression depending on the regulation of the circ_0078710/miR-378b/PRIM2 axis. Journal of receptor and signal transduction research 23 34139933
2021 Genetic variants of CHEK1, PRIM2 and CDK6 in the mitotic phase-related pathway are associated with nonsmall cell lung cancer survival. International journal of cancer 21 34058013
2022 PRIM2 Promotes Cell Cycle and Tumor Progression in p53-Mutant Lung Cancer. Cancers 15 35884433
2012 Lack of genomic imprinting of DNA primase, polypeptide 2 (PRIM2) in human term placenta and white blood cells. Epigenetics 12 22437878
2024 PRIM2 promotes proliferation and metastasis of pancreatic ductal adenocarcinoma through interactions with FAM111B. Medical oncology (Northwood, London, England) 6 39556158
2023 The primase subunits of DNA polymerase α, PRIM1 and PRIM2, are required for the replication of the geminivirus tomato yellow leaf curl virus in the host plant. microPublication biology 4 36685730
2026 Large deletions in the DNA primase large subunit PRIM2 are associated with NADP-malate dehydrogenase activity in a porcine F2 cross. Animal genetics 0 41629253
2026 LARS promotes osteosarcoma proliferation through leucine-dependent PRIM2 translation and DNA replication activation. Journal of experimental & clinical cancer research : CR 0 41832550

Missed literature

Know a paper Affinage missed for PRIM2? Flag it for the maintainers and the community.

No submissions yet.