Affinage

PPP2R5B

Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform · UniProt Q15173

Length
497 aa
Mass
57.4 kDa
Annotated
2026-06-10
11 papers in source corpus 6 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/5 claims corpus-supported (80%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PPP2R5B (B56beta) is a substrate-directing regulatory subunit of the PP2A holoenzyme that targets the phosphatase to specific substrates to restrain AKT and oncogenic kinase signaling (PMID:17297438, PMID:27521959). It bridges the PP2A structural and catalytic subunits to substrates and binding partners, as shown when the intact PP2A trimer is recruited to the membrane protein CALEB/NGC specifically through B56beta, where it inhibits CALEB/NGC-induced Akt phosphorylation and Akt-dependent dendritic branching (PMID:18385213). As a negative regulator of AKT signaling, B56beta dephosphorylates and inactivates Akt in adipocytes, where its overexpression lowers p-Akt and glucose uptake while its knockdown enhances insulin sensitivity (PMID:27521959). Beyond AKT, B56beta selectively associates with Pim-1 kinase and promotes Pim-1 dephosphorylation, ubiquitination, and degradation, identifying a distinct substrate destabilized by this subunit (PMID:17297438). De novo heterozygous mutations clustering in a nine-amino-acid substrate-binding region of PPP2R5B cause human overgrowth with macrocephaly and intellectual disability, consistent with impaired PP2A-dependent dephosphorylation of PI3K/AKT pathway components (PMID:25972378).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2007 Medium

    Established that B56beta is the specific PP2A regulatory subunit controlling a defined kinase substrate, answering whether PP2A targeting of Pim-1 is subunit-selective.

    Evidence Reciprocal co-immunoprecipitation against all B56 family members plus shRNA knockdown with protein half-life and ubiquitination readouts

    PMID:17297438

    Open questions at the time
    • No direct in vitro phosphatase assay on Pim-1 with reconstituted holoenzyme
    • Single lab; the Pim-1 phosphosite dephosphorylated by PP2A/B56beta not mapped
  2. 2008 Medium

    Showed how B56beta directs the whole PP2A trimer to a membrane partner and a localized signaling output, answering whether the subunit acts as a substrate/partner-bridging adaptor.

    Evidence Yeast two-hybrid, Co-IP, affinity chromatography/mass spectrometry, and dendritic morphology readouts in neurons

    PMID:18385213

    Open questions at the time
    • Direct Akt dephosphorylation by the recruited trimer not assayed enzymatically
    • In vivo relevance of CALEB/NGC bridging not tested
  3. 2015 Low

    Extended B56beta's role as an AKT phosphatase to hepatocyte stress responses, addressing whether it controls AKT-dependent cytoprotective output.

    Evidence Stable shRNA knockdown and retroviral overexpression with p-AKT and metallothionein Western blots and cytotoxicity assay

    PMID:26081707

    Open questions at the time
    • No direct phosphatase activity assay; AKT dephosphorylation inferred from p-AKT levels
    • Single lab, single primary method
    • Mechanism linking AKT to metallothionein not resolved
  4. 2015 Low

    Linked PPP2R5B to a Mendelian overgrowth syndrome and localized causal mutations to a substrate-binding region, addressing the physiological consequence of perturbed substrate targeting.

    Evidence Trio-based exome sequencing with structural mapping onto the PP2A holoenzyme crystal structure

    PMID:25972378

    Open questions at the time
    • Mechanistic effect of mutants on substrate dephosphorylation inferred from structural modeling, not functionally validated
    • Specific affected substrates not experimentally identified
  5. 2016 Medium

    Established B56beta as a direct AKT-inactivating subunit in metabolic signaling and as the PP2A regulatory subunit required for erythroid differentiation.

    Evidence Reciprocal overexpression/knockdown in adipocytes (p-Akt, glucose uptake) and shRNA knockdown with hemin-induced differentiation in K562 cells

    PMID:27521959 PMID:27544028

    Open questions at the time
    • Direct phosphatase assay on Akt not performed
    • Substrate driving erythroid differentiation not identified
    • In vivo metabolic phenotype not established

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether the disease-causing substrate-binding mutations functionally alter PP2A/B56beta dephosphorylation of specific AKT/PI3K substrates remains unresolved.
  • No functional assay of mutant B56beta on substrate dephosphorylation
  • No reconstituted in vitro phosphatase characterization across substrates
  • Substrate repertoire beyond Akt and Pim-1 uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 3 GO:0060090 molecular adaptor activity 1
Pathway
R-HSA-162582 Signal Transduction 3
Partners
Complex memberships
PP2A holoenzyme

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2007 B56beta (PPP2R5B) is a regulatory subunit of PP2A that co-immunoprecipitates with Pim-1 kinase (but not B56alpha, gamma, delta, epsilon, or B55alpha), and knockdown of B56beta by shRNA increases the half-life of Pim-1 from 0.7 to 2.8 h and decreases Pim-1 ubiquitinylation, establishing that PP2A/B56beta negatively regulates Pim-1 protein levels by promoting its dephosphorylation, ubiquitination, and degradation. Co-immunoprecipitation, shRNA knockdown, protein half-life assay, ubiquitination assay Oncogene Medium 17297438
2008 B56beta (PPP2R5B) physically interacts with CALEB/NGC (identified by yeast two-hybrid and confirmed by biochemical/immunocytochemical assays), and the whole PP2A trimer (structural and catalytic subunits) binds CALEB/NGC via B56beta (shown by affinity chromatography and mass spectrometry). B56beta inhibits CALEB/NGC-induced Akt phosphorylation and Akt-dependent dendritic branching, but not Akt-independent spine formation. Yeast two-hybrid screen, co-immunoprecipitation, immunocytochemistry, affinity chromatography, mass spectrometry, overexpression/knockdown with dendritic morphology readout FASEB journal Medium 18385213
2016 PPP2R5B is a regulatory subunit of PP2A that dephosphorylates and inactivates Akt in adipocytes; overexpression of PPP2R5B decreased Akt phosphorylation and glucose uptake, while knockdown increased insulin sensitivity, establishing PPP2R5B as a negative regulator of insulin signaling through direct Akt dephosphorylation. Overexpression and shRNA knockdown in adipocytes, Western blot for p-Akt, glucose uptake assay Molecular and cellular endocrinology Medium 27521959
2015 B56beta (PPP2R5B) dephosphorylates Akt in hepatocytes; shRNA knockdown of B56beta increased p-Akt levels and decreased metallothionein (MT) expression upon CdCl2 treatment, while overexpression of B56beta decreased p-Akt and increased MT, placing B56beta as a direct AKT phosphatase in the cellular response to cadmium cytotoxicity. Stable shRNA knockdown and retroviral overexpression, Western blot for p-AKT and MT, MTT cytotoxicity assay Zhonghua yu fang yi xue za zhi Low 26081707
2015 De novo heterozygous mutations in PPP2R5B cluster within a nine-amino-acid region that, when mapped onto the PP2A holoenzyme crystal structure, is predicted to affect substrate binding, suggesting the mutations perturb PP2A-dependent dephosphorylation of specific substrates including components of the AKT/PI3K pathway, causing human overgrowth with macrocephaly and intellectual disability. Trio-based exome sequencing, structural mapping onto published PP2A holoenzyme crystal structure Human molecular genetics Low 25972378
2016 B56beta (PPP2R5B) is the only B56-family regulatory subunit whose expression is induced by both erythropoietin in fetal liver cells and hemin in K562 erythroleukemia cells during erythroid differentiation; knockdown of B56beta attenuates hemin-induced erythroid differentiation, identifying B56beta as the functional PP2A regulatory subunit in this process. shRNA knockdown in K562 cells, hemin-induced differentiation assay, expression profiling of B56 family members Biochemical and biophysical research communications Low 27544028

Source papers

Stage 0 corpus · 11 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2011 Mice lacking phosphatase PP2A subunit PR61/B'delta (Ppp2r5d) develop spatially restricted tauopathy by deregulation of CDK5 and GSK3beta. Proceedings of the National Academy of Sciences of the United States of America 103 21482799
2015 Mutations in the PP2A regulatory subunit B family genes PPP2R5B, PPP2R5C and PPP2R5D cause human overgrowth. Human molecular genetics 75 25972378
2007 Negative regulation of Pim-1 protein kinase levels by the B56beta subunit of PP2A. Oncogene 70 17297438
1996 Assignment of human protein phosphatase 2A regulatory subunit genes b56alpha, b56beta, b56gamma, b56delta, and b56epsilon (PPP2R5A-PPP2R5E), highly expressed in muscle and brain, to chromosome regions 1q41, 11q12, 3p21, 6p21.1, and 7p11.2 --> p12. Genomics 58 8812429
2004 Genomic organisation, chromosomal localisation tissue distribution and developmental regulation of the PR61/B' regulatory subunits of protein phosphatase 2A in mice. Journal of molecular biology 51 15095873
2016 PPP2R5B, a regulatory subunit of PP2A, contributes to adipocyte insulin resistance. Molecular and cellular endocrinology 19 27521959
2008 B56beta, a regulatory subunit of protein phosphatase 2A, interacts with CALEB/NGC and inhibits CALEB/NGC-mediated dendritic branching. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 12 18385213
2019 MiR-8-3p regulates hyperthermia-induced lactate secretion by targeting PPP2R5B in boar Sertoli cells. Molecular reproduction and development 10 31489750
2016 Protein phosphatase 2A regulatory subunit B56β modulates erythroid differentiation. Biochemical and biophysical research communications 9 27544028
2015 [The role of protein phosphatase 2A B56β holoenzyme in the regulation of heavy metal CdCl2 induced cytotoxicity]. Zhonghua yu fang yi xue za zhi [Chinese journal of preventive medicine] 1 26081707
1997 Mapping of the gene encoding the B56 beta subunit of protein phosphatase 2A (PPP2R5B) to a 0.5-Mb region of chromosome 11q13 and its exclusion as a candidate gene for multiple endocrine neoplasia type 1 (MEN1). Human genetics 1 9272177

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