Affinage

PPP2R2D

Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform · UniProt Q66LE6

Length
453 aa
Mass
52.0 kDa
Annotated
2026-06-10
13 papers in source corpus 9 papers cited in narrative 9 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/7 claims corpus-supported (86%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PPP2R2D encodes the B55delta regulatory subunit that directs the PP2A serine/threonine phosphatase toward CDK phosphosites during cell-cycle and meiotic control (PMID:19793917, PMID:33758202). During mitotic entry, PP2A-B55delta opposes Cdk1-driven phosphorylation and is itself inactivated downstream of Greatwall kinase, such that removing PP2A-B55delta activity rescues M-phase entry in Greatwall-depleted extracts (PMID:19793917). In meiosis, PP2A-B55delta acts on two distinct Arpp19 sites: it dephosphorylates Arpp19-S109 (the PKA site) to release prophase arrest upon the progesterone-induced fall in PKA activity, while being inhibited by Greatwall-phosphorylated Arpp19-S67 to permit Cdk1 activation at M-phase entry (PMID:33758202). This TORC1–Greatwall–PP2A-B55delta module is conserved to yeast, where it governs fermentation rate (PMID:30341081). Beyond the cell cycle, PPP2R2D dephosphorylates and inactivates AMPKalpha; hepatic AhR transcriptionally upregulates Ppp2r2d to drive this axis, inhibiting autophagy and causing mitochondrial dysfunction in alcohol-induced steatosis (PMID:36241614). In T cells, PPP2R2D restrains immune activation by maintaining closed chromatin at the IL-2 locus and at immune-checkpoint/exhaustion loci, suppressing IL-2 and pCREB and limiting Treg expansion (PMID:32897879, PMID:35831019). Its expression is tuned post-transcriptionally by miRNAs in cancer and disease contexts (PMID:27074866, PMID:38442987).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2009 High

    Placed PP2A-B55delta in the mitotic-entry pathway as the CDK-phosphosite phosphatase inactivated downstream of Greatwall kinase, explaining how M-phase phosphorylations are stabilized.

    Evidence Xenopus egg extract immunodepletion and epistasis rescue of Gwl and PP2A-B55delta

    PMID:19793917

    Open questions at the time
    • Mechanism by which Greatwall output inactivates the B55delta holoenzyme not resolved at this step
    • Specific CDK substrates dephosphorylated by B55delta not enumerated
  2. 2021 High

    Identified PP2A-B55delta as the Arpp19-S109 (PKA-site) phosphatase, showing it integrates PKA and Greatwall inputs through two distinct Arpp19 sites to control meiotic resumption.

    Evidence Xenopus oocyte meiosis assays with site-specific Arpp19 phosphorylation biochemistry and PKA/Greatwall epistasis

    PMID:33758202

    Open questions at the time
    • Structural basis for dual-site recognition of Arpp19 unresolved
    • Whether the same holoenzyme acts on both sites simultaneously in vivo not established
  3. 2018 Medium

    Demonstrated conservation of the TORC1–Greatwall–PP2A-B55delta module by linking it to metabolic (fermentation) control in yeast, extending its role beyond animal cell-cycle regulation.

    Evidence S. cerevisiae genetics with CDC55 deletion and fermentation assays, confirmed in S. pombe

    PMID:30341081

    Open questions at the time
    • Molecular substrate linking B55delta to glycolytic control not identified
    • Relevance to mammalian metabolism not tested here
  4. 2016 Medium

    Connected PPP2R2D-mediated CDK1 counteraction to chemosensitivity, and showed its expression is set post-transcriptionally by miR-133b.

    Evidence Luciferase 3'UTR reporter for miR-133b, knockdown/overexpression cell lines, cisplatin cell-cycle and in vivo tumorigenicity assays in hepatocellular carcinoma

    PMID:27074866

    Open questions at the time
    • Direct CDK1 dephosphorylation by B55delta not reconstituted in this context
    • Single cancer type
  5. 2020 Medium

    Established an immunoregulatory role: PPP2R2D restrains IL-2 production by keeping the IL-2 locus and pCREB low, linking the phosphatase subunit to T-cell tolerance.

    Evidence T cell-specific conditional KO (LckCre), chromatin accessibility, IL-2 and pCREB measurement, Treg suppression and TLR7 autoimmunity models

    PMID:32897879

    Open questions at the time
    • Direct substrate at the IL-2 locus not biochemically defined
    • Single lab, no reconstitution
  6. 2022 Medium

    Defined a hepatic AhR→PPP2R2D→AMPKalpha axis, showing PPP2R2D dephosphorylates AMPKalpha to inhibit autophagy and drive alcohol-induced steatosis.

    Evidence Alcohol-fed mouse model, hepatocyte-specific AhR KO, PPP2R2D gain/loss, AMPKalpha phosphorylation assays and lipidomics

    PMID:36241614

    Open questions at the time
    • Direct PP2A-B55delta dephosphorylation of AMPKalpha not reconstituted in vitro
    • Single lab
  7. 2022 Medium

    Extended the T-cell role to checkpoint and exhaustion control, showing PPP2R2D loss opens chromatin at exhaustion loci and expands intratumoral Tregs.

    Evidence T cell-specific conditional KO, melanoma xenograft, chromatin accessibility at exhaustion loci, adoptive transfer, flow cytometry

    PMID:35831019

    Open questions at the time
    • Mechanistic link between phosphatase activity and chromatin state at checkpoint loci undefined
    • Direct substrate unknown
  8. 2024 Low

    Reinforced the PPP2R2D–AMPKalpha link in renal epithelium and added miR-5010-5p as a second post-transcriptional regulator tuning the axis under high glucose.

    Evidence Dual-luciferase reporter, miRNA mimic transfection, AMPKalpha and NF-kappaB phosphorylation western blots, cytokine measurement

    PMID:38442987

    Open questions at the time
    • Indirect evidence that PPP2R2D dephosphorylates AMPKalpha — no direct biochemistry
    • Single lab

Open questions

Synthesis pass · forward-looking unresolved questions
  • The molecular determinants of B55delta substrate selection across its cell-cycle (CDK/Arpp19) and metabolic/immune (AMPKalpha, chromatin) roles remain unresolved.
  • No structural model of how B55delta recruits distinct substrates
  • Direct reconstitution of AMPKalpha dephosphorylation lacking
  • Mechanism connecting phosphatase activity to chromatin accessibility at immune loci unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140096 catalytic activity, acting on a protein 3 GO:0098772 molecular function regulator activity 2
Pathway
R-HSA-1640170 Cell Cycle 3 R-HSA-1430728 Metabolism 2 R-HSA-168256 Immune System 2
Complex memberships
PP2A holoenzyme (B55delta-containing)

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2009 Greatwall kinase (Gwl), activated by Cdk1/cyclin B during M phase, promotes inactivation of PP2A/B55delta (PP2A containing the B55delta/PPP2R2D regulatory subunit), a phosphatase that targets CDK phosphosites. Once activated, Gwl promotes PP2A/B55delta inhibition without further requirement for MPF. Removal of PP2A/B55delta activity rescues the inability of Gwl-depleted Xenopus egg extracts to enter M phase, placing PP2A/B55delta downstream of Gwl in the pathway controlling mitotic entry. Xenopus egg extract biochemistry, immunodepletion of Gwl and PP2A/B55delta, epistasis rescue experiments Molecular biology of the cell High 19793917
2021 PP2A-B55delta (PPP2R2D-containing complex) is the phosphatase responsible for dephosphorylating Arpp19 at serine 109 (the PKA site) in Xenopus oocytes. In prophase, PKA and PP2A-B55delta are simultaneously active; the drop in PKA activity induced by progesterone allows PP2A-B55delta to dephosphorylate Arpp19-S109, releasing the prophase arrest. PP2A-B55delta thus acts on two distinct Arpp19 sites: opposing PKA (S109 dephosphorylation to initiate meiosis) and being inhibited by Greatwall-phosphorylated Arpp19 (S67) to permit Cdk1 activation at M-phase entry. Xenopus oocyte meiosis assays, phosphatase identification biochemistry, site-specific Arpp19 phosphorylation/dephosphorylation assays, epistasis with PKA and Greatwall Nature communications High 33758202
2018 In yeast (Saccharomyces cerevisiae), the TORC1–Greatwall(Rim15)–PP2A-B55delta (Cdc55) pathway controls alcoholic fermentation rate. Deletion of CDC55 (encoding B55delta) abolished high fermentation performance in Rim15-deficient yeast, placing PP2A-B55delta downstream of Greatwall/Rim15 and upstream of glycolytic control. The pathway is conserved in fission yeast (Schizosaccharomyces pombe). Yeast genetics, fermentation assays with CDC55 deletion mutants, TORC1 pathway epistasis Applied and environmental microbiology Medium 30341081
2020 PPP2R2D in T cells suppresses IL-2 production by maintaining the IL-2 gene and IL-2-enhancing transcription factor loci in a closed chromatin state and keeping phosphorylated CREB (an IL-2 enhancer) at low levels. T cell-specific PPP2R2D knockout mice produce more IL-2, show elevated pCREB, and display increased Treg suppressive function in vitro and in vivo, with reduced systemic autoimmunity upon TLR7 stimulation. T cell-specific conditional knockout (LckCre), chromatin accessibility assays, IL-2 production measurement, in vitro and in vivo Treg suppression assays, autoimmunity model JCI insight Medium 32897879
2022 Alcohol consumption induces hepatic AhR activation, which transcriptionally upregulates Ppp2r2d. Elevated PPP2R2D then dephosphorylates/inactivates AMPKalpha, causing autophagy inhibition and mitochondrial dysfunction, and altering phospho-/sphingo-lipid metabolism. Hepatocyte-specific AhR ablation reverses steatosis and restores phospholipid content, confirming the AhR→PPP2R2D→AMPKalpha dephosphorylation axis. Alcohol-fed mouse model, hepatocyte-specific AhR knockout, PPP2R2D overexpression/knockdown, AMPKalpha phosphorylation assays, autophagy markers, lipidomics, AhR chromatin-binding (transcriptional target identification) Nature communications Medium 36241614
2016 PPP2R2D (PP2A-B55delta) counteracts CDK1 activation in hepatocellular carcinoma cells treated with cisplatin, modulating G2/M cell cycle transitions. miR-133b suppresses PP2A-B55delta expression by binding to the 3'-UTR of PPP2R2D mRNA. Overexpression of B55delta enhances cisplatin sensitivity, while knockdown reduces it. Luciferase reporter assay (miR-133b binding to PPP2R2D 3'UTR), PPP2R2D stable knockdown/overexpression cell lines, cell cycle analysis, apoptosis assays, in vivo tumorigenicity assay Journal of experimental & clinical cancer research Medium 27074866
2022 In T cells, PPP2R2D acts as a negative regulator of immune checkpoint receptor expression (PD-1, LAG3, TIM3, CTLA4): T cell-specific PPP2R2D-deficient mice show open chromatin at exhaustion marker loci and greater intratumoral T cell exhaustion. PPP2R2D deficiency also leads to expansion of Foxp3+ Treg cells within tumors, enhancing Treg-mediated suppression of antitumor immunity. Conditional T cell-specific KO (LckCreR2Dfl/fl), melanoma xenograft model, chromatin accessibility assays at exhaustion marker loci, adoptive T cell transfer, flow cytometry Journal of immunology Medium 35831019
2018 PPP2R2D promotes gastric cancer cell proliferation and migration through activation of mTOR signaling: PPP2R2D knockdown decreases mTOR phosphorylation, while overexpression promotes proliferation and migration in vitro. siRNA knockdown and overexpression in gastric cancer cell lines, mTOR phosphorylation assays, proliferation/migration assays, in vivo tumor growth and metastasis model International journal of oncology Low 29568966
2024 PPP2R2D modulates AMPKalpha phosphorylation in renal tubular epithelial cells: miR-5010-5p targets PPP2R2D (validated by dual-luciferase assay), and miR-5010-5p transfection reduces PPP2R2D expression, restores phosphorylated AMPK, and decreases NF-kappaB phosphorylation, reducing inflammatory cytokine production under high-glucose conditions. Dual-luciferase reporter assay, miRNA mimic transfection, western blotting for AMPKalpha phosphorylation and NF-kappaB phosphorylation, cytokine measurement BMJ open diabetes research & care Low 38442987

Source papers

Stage 0 corpus · 13 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2009 The M phase kinase Greatwall (Gwl) promotes inactivation of PP2A/B55delta, a phosphatase directed against CDK phosphosites. Molecular biology of the cell 160 19793917
2016 Protein phosphatase 2A-B55δ enhances chemotherapy sensitivity of human hepatocellular carcinoma under the regulation of microRNA-133b. Journal of experimental & clinical cancer research : CR 35 27074866
2022 Induction of the hepatic aryl hydrocarbon receptor by alcohol dysregulates autophagy and phospholipid metabolism via PPP2R2D. Nature communications 29 36241614
2018 Nutrient Signaling via the TORC1-Greatwall-PP2AB55δ Pathway Is Responsible for the High Initial Rates of Alcoholic Fermentation in Sake Yeast Strains of Saccharomyces cerevisiae. Applied and environmental microbiology 22 30341081
2020 PPP2R2D suppresses IL-2 production and Treg function. JCI insight 17 32897879
2018 PPP2R2D, a regulatory subunit of protein phosphatase 2A, promotes gastric cancer growth and metastasis via mechanistic target of rapamycin activation. International journal of oncology 15 29568966
2021 The M-phase regulatory phosphatase PP2A-B55δ opposes protein kinase A on Arpp19 to initiate meiotic division. Nature communications 9 33758202
2024 MicroRNA-5010-5p ameliorates high-glucose induced inflammation in renal tubular epithelial cells by modulating the expression of PPP2R2D. BMJ open diabetes research & care 6 38442987
2022 PPP2R2D Suppresses Effector T Cell Exhaustion and Regulatory T Cell Expansion and Inhibits Tumor Growth in Melanoma. Journal of immunology (Baltimore, Md. : 1950) 5 35831019
2025 LncRNA SNHG25 facilitates colorectal cancer progression by upregulating PPP2R2D expression through sponging miR-329-3p. Cytotechnology 4 40256259
2018 Cd induces G2/M cell cycle arrest by up-regulating miR-133b via directly targeting PPP2R2D in L02 hepatocytes. Metallomics : integrated biometal science 3 30211417
2014 An in vivo screen implicates PPP2R2D as an inhibitor of T-cell function. Cancer discovery 2 24596207
2018 Retraction: Cd induces G2/M cell cycle arrest by up-regulating miR-133b via directly targeting PPP2R2D in L02 hepatocytes. Metallomics : integrated biometal science 0 30357203

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