Affinage

PLXNC1

Plexin-C1 · UniProt O60486

Length
1568 aa
Mass
175.7 kDa
Annotated
2026-06-10
12 papers in source corpus 9 papers cited in narrative 9 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/5 claims corpus-supported (80%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PLXNC1 (VESPR/CD232) is a transmembrane plexin-family receptor characterized by a semaphorin-like domain that transduces semaphorin signals to govern immune cell activation and neural circuit formation (PMID:9586637). It was originally isolated as the cellular receptor for the poxvirus-encoded semaphorin A39R, whose binding to PLXNC1-expressing monocytes up-regulates ICAM-1 and induces cytokine production (PMID:9586637). In the nervous system, Sema7A/PLXNC1 signaling patterns connectivity: it directs topographic segregation of nigrostriatal versus mesolimbic dopaminergic pathways through differential transcriptional control of Plxnc1 (repression by Lmx1a/Lmx1b in substantia nigra neurons, enhancement by Otx2 in ventral tegmental area neurons) (PMID:29038581), and during a neonatal critical period it drives dendrite selection and glomerular enlargement in olfactory mitral/tufted cells to enable olfactory imprinting (PMID:33780330). In disease and inflammatory contexts, Sema7A/PLXNC1 binding promotes neutrophil extracellular trap formation in acute lung injury (PMID:41713818), and PLXNC1 drives gastric cancer proliferation and migration by acting upstream of IL6ST in the IL-6/STAT3 axis (PMID:32117710) and by transferring exosomal miR-92b-5p to macrophages to promote M2 polarization, with STAT3 in turn directly activating PLXNC1 transcription to form a feedback loop (PMID:39566403). PLXNC1 also physically binds GRP78 to drive ER stress, inflammation, and matrix degradation in IL-1β-treated chondrocytes (PMID:37853395).

Mechanistic history

Synthesis pass · year-by-year structured walk · 9 steps
  1. 1998 High

    Established that PLXNC1 is a bona fide cell-surface receptor by isolating it as the binding partner for the viral semaphorin A39R and linking that engagement to immune activation.

    Evidence A39R.Fc affinity purification, tandem MS peptide identification, and monocyte stimulation assays in a human B cell line

    PMID:9586637

    Open questions at the time
    • Did not identify the endogenous mammalian semaphorin ligand
    • Downstream intracellular signaling effectors of the receptor were not defined
  2. 2017 High

    Showed that Sema7A/PlxnC1 signaling patterns dopaminergic circuitry and that Plxnc1 expression is set by opposing transcription factors, explaining how the receptor achieves spatial specificity in vivo.

    Evidence Transcription factor knockout/overexpression, axon tracing, and genetic epistasis with rescue in mice

    PMID:29038581

    Open questions at the time
    • Did not resolve the intracellular guidance signaling cascade downstream of PlxnC1
    • Direct transcription-factor binding at the Plxnc1 locus not shown
  3. 2021 High

    Demonstrated a developmental role for PlxnC1 in olfactory imprinting, establishing that Sema7A/PlxnC1 signaling drives postsynaptic dendrite selection during a critical window.

    Evidence Knockout and rescue mice, live imaging of dendrite localization, and odor behavioral assays

    PMID:33780330

    Open questions at the time
    • Molecular link between receptor engagement and dendrite/glomerular remodeling not defined
    • Critical-period timing mechanism not mechanistically explained
  4. 2020 Medium

    Placed PLXNC1 upstream of IL6ST in the IL-6/STAT3 axis, implicating the receptor as a driver of gastric cancer proliferation and migration.

    Evidence shRNA knockdown, IL6ST overexpression rescue, in vitro proliferation/migration assays, xenograft, and GSEA

    PMID:32117710

    Open questions at the time
    • No direct DNA-binding assay confirming PLXNC1 acts at the IL6ST promoter
    • Mechanism by which a plexin receptor regulates IL6ST transcription unresolved
    • Single-lab finding without independent replication
  5. 2023 Medium

    Identified a physical PLXNC1–GRP78 interaction that drives ER stress and inflammatory matrix degradation, extending PLXNC1 function into chondrocyte pathology.

    Evidence Co-IP, shRNA knockdown, GRP78 overexpression rescue, western blot, TUNEL, and RT-qPCR in IL-1β-treated chondrocytes

    PMID:37853395

    Open questions at the time
    • Single Co-IP without reciprocal validation or structural mapping of the interface
    • Whether interaction is direct versus complex-mediated not established
    • Single-lab finding
  6. 2024 Medium

    Defined a PLXNC1–exosomal miR-92b-5p–STAT3 circuit promoting M2 macrophage polarization and a STAT3-driven feedback loop that transcriptionally sustains PLXNC1 expression.

    Evidence Exosome isolation, small RNA-seq, flow cytometry, ChIP-qPCR, dual-luciferase reporter, co-culture, and xenograft

    PMID:39566403

    Open questions at the time
    • Mechanism linking the receptor to MEK1/MSK1/CREB1-controlled exosomal miRNA loading not fully resolved
    • Single-lab finding without independent confirmation of the feedback loop
  7. 2024 Low

    Flagged PLXNC1 as a candidate ATM/ATR phosphorylation substrate linked to neurite extension, hinting at kinase regulation of its neural signaling role.

    Evidence Global phosphoproteomics after ATM depletion in human neuroblastoma cells (preprint)

    PMID:bio_10.1101_2024.06.26.600760

    Open questions at the time
    • No direct mutagenesis or functional validation of the specific phosphorylation event
    • Preprint, single dataset
    • Functional consequence of phosphorylation for receptor activity unknown
  8. 2025 Low

    Proposed that anti-correlated PLXNC1/SEMA7A expression along the cortical sensorimotor-association axis exerts repulsive control over cortico-cortical connectivity.

    Evidence Multispecies transcriptomic analysis and in vivo connectivity experiments (preprint)

    PMID:bio_10.1101_2025.06.26.660775

    Open questions at the time
    • Limited mechanistic detail in preprint abstract
    • Causal connectivity experiments not fully described
    • Cellular mechanism of repulsion not defined
  9. 2026 Medium

    Showed that Sema7A/PlxnC1 binding promotes neutrophil extracellular trap formation in acute lung injury and that this engagement is pharmacologically druggable.

    Evidence Molecular docking, in vitro competitive binding (baicalin), ALI rat model, RNA-seq, and single-cell sequencing

    PMID:41713818

    Open questions at the time
    • Downstream signaling from PlxnC1 to NET machinery not mapped
    • Docking-based competitive inhibition not confirmed by direct structural data
    • Single-lab finding

Open questions

Synthesis pass · forward-looking unresolved questions
  • The intracellular signal-transduction mechanism by which PLXNC1 converts semaphorin binding into cytoskeletal, transcriptional, and immune outputs remains undefined.
  • No defined cytoplasmic effector or signaling cascade for the receptor
  • No structural model of ligand-receptor engagement
  • Mechanism connecting a surface receptor to reported transcriptional activities (IL6ST) unresolved

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060089 molecular transducer activity 2 GO:0038024 cargo receptor activity 1
Localization
GO:0005886 plasma membrane 1
Pathway
R-HSA-162582 Signal Transduction 3 R-HSA-1266738 Developmental Biology 2 R-HSA-168256 Immune System 2

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1998 PLXNC1 (VESPR) was identified as a novel cellular receptor for the poxvirus-encoded semaphorin A39R. A39R.Fc fusion protein was used to affinity purify PLXNC1 from a human B cell line; tandem mass spectrometry of receptor peptides confirmed its identity as a new plexin family member containing a semaphorin-like domain. Binding of A39R to PLXNC1-expressing monocytes up-regulated ICAM-1 and induced cytokine production. Affinity purification with A39R.Fc fusion protein, tandem mass spectrometry, cDNA cloning, functional monocyte stimulation assays Immunity High 9586637
2017 Sema7A/PlxnC1 signaling is responsible for the segregation of nigrostriatal and mesolimbic dopaminergic pathways. The transcription factors Lmx1a and Lmx1b transcriptionally repress Plxnc1 expression in substantia nigra dopamine neurons, while Otx2 enhances Plxnc1 expression in ventral tegmental area neurons; this differential expression directs topographic dopaminergic circuit formation. Transcription factor knockout/overexpression, axon tracing, genetic epistasis, in vivo knockout and rescue experiments in mice Nature communications High 29038581
2021 Sema7A/PlxnC1 signaling in the olfactory system promotes post-synaptic events and dendrite selection in mitral/tufted cells, resulting in glomerular enlargement and increased sensitivity to experienced odors. PlxnC1 is expressed in mitral/tufted cells during the neonatal critical period, and knockout experiments confirmed this pathway is required for olfactory imprinting. Knockout mice, rescue experiments, live imaging of dendrite localization, odor behavioral assays eLife High 33780330
2020 PLXNC1 promotes gastric cancer cell proliferation and migration through transcriptional activation of IL6ST (gp130/interleukin-6 signal transducer). PLXNC1 knockdown abolished these effects, and overexpression of IL6ST rescued the malignant behavior of PLXNC1-deficient cells, placing PLXNC1 upstream of IL6ST in the IL-6/STAT3 signaling axis. shRNA knockdown, overexpression, rescue experiment with IL6ST, in vitro proliferation/migration assays, in vivo xenograft, GSEA Frontiers in oncology Medium 32117710
2023 PLXNC1 physically binds to GRP78 (glucose-regulating protein 78) in IL-1β-treated chondrocytes, as confirmed by co-immunoprecipitation. PLXNC1 silencing decreased GRP78 expression and suppressed endoplasmic reticulum stress, inflammation, apoptosis, and extracellular matrix degradation; GRP78 overexpression abolished these protective effects, placing PLXNC1 upstream of GRP78-mediated ER stress. Co-immunoprecipitation (Co-IP), shRNA knockdown, western blotting, CCK-8 viability, TUNEL apoptosis, RT-qPCR Journal of orthopaedic surgery and research Medium 37853395
2024 PLXNC1 in gastric cancer cells promotes M2 macrophage polarization by transferring exosomal miR-92b-5p to macrophages, where miR-92b-5p inhibits SOCS7-STAT3 interactions and activates STAT3. PLXNC1 regulates exosomal miR-92b-5p levels through the MEK1/MSK1/CREB1 pathway. STAT3, in turn, transcriptionally regulates PLXNC1 expression (confirmed by ChIP-QPCR and dual-luciferase reporter assay), forming a feedback loop. Exosome isolation/characterization, small RNA-seq, flow cytometry, shRNA knockdown, ChIP-QPCR, dual-luciferase reporter assay, co-culture, xenograft mouse model Phytomedicine Medium 39566403
2024 PLXNC1 was identified as an ATM/ATR phosphorylation target in human neuroblastoma cells. Phosphoproteomics showed strong downregulation of ATM/ATR-phosphopeptides on PLXNC1 after ATM depletion, categorizing it among neurite extension factors; this suggests ATM kinase phosphorylates PLXNC1 as part of semaphorin-CRMP5-microtubule signaling relevant to neurite retraction. Global phosphoproteomics (phosphopeptide profiling), ATM depletion in human neuroblastoma cells bioRxiv (preprint)preprint Low bio_10.1101_2024.06.26.600760
2025 PLXNC1 and SEMA7A exhibit anti-correlated expression along the cortical sensorimotor-association axis and have repulsive functions in shaping cortico-cortical connectivity, as part of competing transcriptional programs (pericentral vs. central) that spatially pattern the neocortex. Multispecies transcriptomic analysis, in vivo connectivity experiments (details in preprint) bioRxiv (preprint)preprint Low bio_10.1101_2025.06.26.660775
2026 Sema7A binds PlxnC1 to promote neutrophil extracellular trap (NET) formation in acute lung injury. Molecular docking and in vitro experiments showed that baicalin (from Tanreqing injection) competitively inhibits Sema7A binding to PlxnC1, thereby suppressing NET formation. Molecular docking, in vitro competitive binding assay, in vivo ALI rat model, RNA sequencing, single-cell sequencing Journal of ethnopharmacology Medium 41713818

Source papers

Stage 0 corpus · 12 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1998 A poxvirus-encoded semaphorin induces cytokine production from monocytes and binds to a novel cellular semaphorin receptor, VESPR. Immunity 203 9586637
2017 Transcriptional repression of Plxnc1 by Lmx1a and Lmx1b directs topographic dopaminergic circuit formation. Nature communications 27 29038581
2024 EGCG targeting STAT3 transcriptionally represses PLXNC1 to inhibit M2 polarization mediated by gastric cancer cell-derived exosomal miR-92b-5p. Phytomedicine : international journal of phytotherapy and phytopharmacology 26 39566403
2021 The olfactory critical period is determined by activity-dependent Sema7A/PlxnC1 signaling within glomeruli. eLife 26 33780330
2019 MiR-4500 Regulates PLXNC1 and Inhibits Papillary Thyroid Cancer Progression. Hormones & cancer 23 31317324
2020 PLXNC1 Enhances Carcinogenesis Through Transcriptional Activation of IL6ST in Gastric Cancer. Frontiers in oncology 17 32117710
2018 Long non-coding RNA CASC2 inhibits tumorigenesis via the miR-181a/PLXNC1 axis in melanoma. Acta biochimica et biophysica Sinica 17 29514220
2021 PLXNC1: A Novel Potential Immune-Related Target for Stomach Adenocarcinoma. Frontiers in cell and developmental biology 15 34277610
2023 PLXNC1 interference alleviates the inflammatory injury, apoptosis and extracellular matrix degradation of IL-1β-exposed chondrocytes via suppressing GRP78 expression. Journal of orthopaedic surgery and research 8 37853395
2012 PLXNC1 and RDH13 associated with bilateral convergent strabismus with exophthalmus in German Brown cattle. Molecular vision 4 22933835
2026 Tanreqing injection regulates Sema7a/Plxnc1 signaling pathway mediated neutrophil extracellular trap formation to alleviate lipopolysaccharide-induced acute lung injury. Journal of ethnopharmacology 0 41713818
2025 Identification of PLXNC1 as a novel biomarker for consensus molecular subtype 4 in colorectal cancer. Genes & diseases 0 42004227

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