Affinage

PLXNB2

Plexin-B2 · UniProt O15031

Length
1838 aa
Mass
205.1 kDa
Annotated
2026-06-10
71 papers in source corpus 7 papers cited in narrative 9 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PLXNB2 is a transmembrane semaphorin-family receptor that transduces ligand cues into control of cytoskeletal mechanics and cell differentiation across neural development, tissue fibrosis, and cancer. In neural progenitors, PLXNB2 maintains cortical tension through actomyosin contractility, establishing a mechanical barrier against premature differentiation; its loss lowers cortical tension and triggers premature cell-cycle exit, accelerated neuronal commitment, progenitor depletion, and neuroepithelial disorganization. Biallelic loss-of-function variants in PLXNB2 cause an autosomal recessive syndrome of amelogenesis imperfecta, sensorineural hearing loss, and variable intellectual disability, with receptor expression in differentiating ameloblasts linking PLXNB2 to enamel formation (PMID:38458752). As a signaling receptor, PLXNB2 engages SEMA4D secreted by macrophages to drive fibrogenic activation of hepatic stellate cells, and acts as a glial receptor in astrocytes and microglia that shapes amygdala-mediated stress responses (PMID:36325348) and an H3K18-lactylation-driven neuroprotective microglial program after ischemic stroke (PMID:40835170). In cancer, a G842C gain-of-function mutation sustains tumor stem cell self-renewal and invasiveness via basal EGFR phosphorylation, and PLXNB2 sits upstream of AKT/ERK1/2 signaling in ovarian cancer cells where it is controlled by miRNA regulatory axes (PMID:36722641, PMID:30054097).

Mechanistic history

Synthesis pass · year-by-year structured walk · 9 steps
  1. 2018 Medium

    Established PLXNB2 as a node upstream of pro-proliferative kinase signaling, answering whether the receptor feeds canonical growth pathways in cancer.

    Evidence Luciferase 3'UTR validation of miR-126-3p targeting plus siRNA knockdown with phospho-AKT/ERK1/2 readout in ovarian cancer cells

    PMID:30054097

    Open questions at the time
    • Does not identify the ligand driving AKT/ERK1/2 activation
    • Single cell-line context; no in vivo confirmation of the signaling axis
  2. 2021 Medium

    Extended the regulatory understanding of PLXNB2 by placing its expression under a circRNA/miRNA sponge axis controlling tumorigenic behavior.

    Evidence Dual-luciferase and RIP assays for circ_0013958/miR-637/PLXNB2 plus knockdown and xenograft assays in ovarian cancer

    PMID:34367233

    Open questions at the time
    • Regulation is transcript-level; does not address receptor signaling mechanism
    • No structural or ligand-binding detail
  3. 2022 Medium

    Defined a glial, non-neuronal function for PLXNB2, addressing whether the receptor acts in CNS cell types governing behavior.

    Evidence Intra-amygdaloid functional-blocking monoclonal antibody with behavioral, volumetric MRI, and microglial morphology readouts in mouse

    PMID:36325348

    Open questions at the time
    • No genetic KO confirmation of the antibody phenotype
    • Ligand and downstream signaling in glia not identified
  4. 2023 High

    Showed that a specific gain-of-function mutation reprograms PLXNB2 into an oncogenic driver coupled to EGFR, distinguishing mutant from wild-type receptor function.

    Evidence Mutant-selective shRNA knockdown, lentiviral gene transfer, xenograft tumorigenesis, EGFR phospho-immunoblot, and EGFR inhibitor treatment in CUP stem cells

    PMID:36722641

    Open questions at the time
    • Mechanism by which G842C activates EGFR is not resolved
    • Whether wild-type PLXNB2 couples to EGFR under any condition is unclear
  5. 2024 High

    Connected PLXNB2 to human Mendelian disease, answering whether loss of the receptor produces a defined developmental syndrome.

    Evidence Exome/genome sequencing with Sanger segregation across six families and mouse ameloblast expression analysis

    PMID:38458752

    Open questions at the time
    • Cellular mechanism linking PLXNB2 loss to enamel and inner-ear defects not established
    • Variant-specific functional consequences not assayed
  6. 2024 Low

    Proposed PLXNB2 as a stromal receptor for tumor-derived angiogenin, addressing tumor-stromal paracrine signaling.

    Evidence Single-cell RNA-seq of paired human colon/CRC tissue with CellChat ligand-receptor inference

    PMID:38295715

    Open questions at the time
    • Purely computational inference; no biochemical validation of PLXNB2-angiogenin binding
    • No functional assay of the proposed signaling
  7. 2025 Medium

    Identified the mechanical mechanism by which PLXNB2 controls neural progenitor fate, linking the receptor to cortical tension and differentiation timing.

    Evidence CRISPR KO in cerebral organoids with cortical tension measurement and cell-cycle/differentiation marker analysis (preprint)

    Open questions at the time
    • Preprint, not peer-reviewed
    • Ligand and downstream actomyosin effectors not defined
    • Direct mechanistic link to patient intellectual disability is correlative
  8. 2025 Medium

    Established an epigenetically driven, ligand-coupled PLXNB2 program in microglia, defining a neuroprotective role in ischemia.

    Evidence MCAO mouse model with H3K18la manipulation and microglia-specific Plxnb2 inhibition and outcome measures

    PMID:40835170

    Open questions at the time
    • Downstream microglial signaling from PLXNB2 not resolved
    • Single-lab study
  9. 2025 Medium

    Defined a SEMA4D-PLXNB2 ligand-receptor axis driving fibrogenic stellate cell activation, naming a direct ligand for the receptor in tissue fibrosis.

    Evidence Single-cell fixed RNA profiling of TAA-induced mouse liver fibrosis with in vivo SEMA4D blockade (preprint)

    Open questions at the time
    • Preprint, single lab
    • Direct SEMA4D-PLXNB2 binding not biochemically demonstrated here
    • Downstream signaling in HSCs not characterized

Open questions

Synthesis pass · forward-looking unresolved questions
  • How PLXNB2 ligand engagement is mechanistically transduced into cytoskeletal, EGFR, and AKT/ERK outputs across its different cell-type contexts remains unresolved.
  • No structural model of ligand-receptor or receptor-EGFR coupling
  • Unified downstream signaling logic across neural, glial, fibrotic, and cancer contexts is undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060089 molecular transducer activity 2 GO:0098772 molecular function regulator activity 2
Localization
GO:0005886 plasma membrane 2
Pathway
R-HSA-1266738 Developmental Biology 2 R-HSA-162582 Signal Transduction 2
Partners

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2022 PLXNB2 is expressed in astrocytes and microglia in the mouse amygdala; functional blocking of amygdaloid Plxnb2 with a monoclonal antibody induced anxiety-like behavior, amygdaloid enlargement, and microglial ramification, establishing a glial PLXNB2-dependent role in amygdala-mediated stress responses. In vivo intra-amygdaloid injection of Plxnb2 functional-blocking monoclonal antibody (mAb-102); behavioral testing; volumetric MRI; microglial morphology analysis; cell-type-specific expression by immunofluorescence in mouse brain. Frontiers in immunology Medium 36325348
2024 Biallelic loss-of-function variants in PLXNB2 cause an autosomal recessive syndrome with amelogenesis imperfecta (AI), sensorineural hearing loss, and variable intellectual disability in humans. Plxnb2 expression was detected in differentiating ameloblasts in mice, linking the receptor's developmental expression to enamel formation. Exome/genome sequencing with Sanger segregation in six families; RNA expression analysis in C57Bl/6 mouse ameloblasts. Journal of medical genetics High 38458752
2023 A G842C gain-of-function mutation in PLXNB2 sustains self-renewal, proliferation, and invasiveness of cancer-of-unknown-primary (CUP) stem cells. Knockdown of mutant but not wild-type PLXNB2 impaired proliferation and tumorigenesis in mice; transfer of G842C-PLXNB2 alone promoted tumorigenesis. The mutant receptor was associated with basal EGFR phosphorylation, and EGFR inhibition blocked viability and invasiveness of CUP cells dependent on G842C-PLXNB2. shRNA knockdown (mutant vs. wild-type selective), lentiviral gene transfer, in vitro proliferation/self-renewal assays, xenograft mouse tumorigenesis, EGFR phosphorylation immunoblot, EGFR inhibitor treatment. EMBO molecular medicine High 36722641
2018 PLXNB2 is a direct target of miR-126-3p in ovarian cancer cells; knockdown of PLXNB2 with siRNA recapitulated the inhibitory effects of miR-126-3p overexpression on cell proliferation, invasion, and phosphorylation of AKT and ERK1/2, placing PLXNB2 upstream of AKT/ERK1/2 signaling in this context. Luciferase reporter assay confirming miR-126-3p binding to PLXNB2 3′UTR; siRNA knockdown of PLXNB2; proliferation, invasion, and cell cycle assays; phospho-immunoblot for AKT and ERK1/2. Reproductive biology Medium 30054097
2021 In ovarian cancer cells, PLXNB2 expression is regulated via a circ_0013958/miR-637 sponge axis; dual-luciferase and RIP assays confirmed miR-637 directly targets the PLXNB2 3′UTR, and PLXNB2 downstream activity mediates the pro-tumorigenic effects of circ_0013958 on proliferation, migration, and invasion. Dual-luciferase reporter assay; RNA immunoprecipitation (RIP); siRNA knockdown; in vitro proliferation/invasion/apoptosis assays; xenograft tumor assay. Frontiers in genetics Medium 34367233
2024 CRC-associated myofibroblasts upregulate PLXNB2 as a cell-surface angiogenin receptor; single-cell RNA-seq analysis of paired normal and CRC human tissue showed that myofibroblasts in CRC uniquely express PLXNB2 and receive angiogenin paracrine signals from CRC cells via PLXNB2, suggesting PLXNB2 mediates tumor-stromal angiogenin signaling. Single-cell RNA sequencing of paired normal human colon and CRC tissue; CellChat ligand-receptor interaction analysis; PLXNB2 expression quantification across cell populations. The Journal of surgical research Low 38295715
2025 Histone H3 lysine 18 lactylation (H3K18la) transcriptionally upregulates plxnb2 in microglia after ischemic stroke; microglia-specific inhibition of plxnb2 abolished the neuroprotective effects of lactate treatment, demonstrating that H3K18la-driven plxnb2 expression mediates an anti-inflammatory, neuroprotective microglial program in ischemia. Middle cerebral artery occlusion mouse model; H3K18la ChIP/lactate manipulation; microglia-specific Plxnb2 inhibition; histological and behavioral outcome measures. Neurobiology of disease Medium 40835170
2025 Deletion of Plexin-B2 in neural progenitors lowers cortical tension (actomyosin contractility), reducing the mechanical barrier against premature neuronal differentiation. In cerebral organoids, Plexin-B2 ablation caused premature cell-cycle exit, accelerated neuronal lineage commitment, progenitor pool depletion, and neuroepithelial disorganization, phenocopying features of intellectual disability seen in patients with pathogenic PLXNB2 variants. Genetic deletion (CRISPR/KO) in cerebral organoids; cortical tension measurements; cell-cycle and differentiation marker analysis; comparison to patient phenotype. bioRxivpreprint Medium
2025 SEMA4D secreted by monocyte-derived macrophages during liver fibrosis progression activates Plxnb2-expressing hepatic stellate cells (HSCs); blockade of SEMA4D attenuated fibrosis in vivo, placing the SEMA4D–PLXNB2 ligand-receptor pair as a mediator of fibrogenic HSC activation. Single-cell fixed RNA profiling (FLEX) of TAA-induced mouse liver fibrosis; ligand-receptor interaction analysis; in vivo SEMA4D blockade with fibrosis readout. bioRxivpreprint Medium

Source papers

Stage 0 corpus · 71 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1998 MM-1, a novel c-Myc-associating protein that represses transcriptional activity of c-Myc. The Journal of biological chemistry 101 9792694
2001 A novel transrepression pathway of c-Myc. Recruitment of a transcriptional corepressor complex to c-Myc by MM-1, a c-Myc-binding protein. The Journal of biological chemistry 87 11585818
2022 HDLBP-stabilized lncFAL inhibits ferroptosis vulnerability by diminishing Trim69-dependent FSP1 degradation in hepatocellular carcinoma. Redox biology 81 36423520
2002 Physical interaction of p73 with c-Myc and MM1, a c-Myc-binding protein, and modulation of the p73 function. The Journal of biological chemistry 63 11844794
2001 MM-1, a c-Myc-binding protein, is a candidate for a tumor suppressor in leukemia/lymphoma and tongue cancer. The Journal of biological chemistry 63 11567024
2018 MiR-126-3p inhibits ovarian cancer proliferation and invasion via targeting PLXNB2. Reproductive biology 53 30054097
2002 Involvement of phosphorylation of Tyr-31 and Tyr-118 of paxillin in MM1 cancer cell migration. International journal of cancer 47 11774284
2007 MM-1 facilitates degradation of c-Myc by recruiting proteasome and a novel ubiquitin E3 ligase. International journal of oncology 34 17786314
2008 Hepatitis C virus ARFP/F protein interacts with cellular MM-1 protein and enhances the gene trans-activation activity of c-Myc. Journal of biomedical science 33 18398700
2013 Complete Genome Sequence of the γ-Hexachlorocyclohexane-Degrading Bacterium Sphingomonas sp. Strain MM-1. Genome announcements 30 23682148
2012 Kinetics of arsenite oxidation by Variovorax sp. MM-1 isolated from a soil and identification of arsenite oxidase gene. Journal of hazardous materials 30 23290483
2011 Co-occurrence of types 1 and 2 PrP(res) in sporadic Creutzfeldt-Jakob disease MM1. The American journal of pathology 30 21356381
2018 ΔNp63α down-regulates c-Myc modulator MM1 via E3 ligase HERC3 in the regulation of cell senescence. Cell death and differentiation 28 29880857
2008 Negative regulation of the Wnt signal by MM-1 through inhibiting expression of the wnt4 gene. Experimental cell research 26 18281035
2011 The lin genes for γ-hexachlorocyclohexane degradation in Sphingomonas sp. MM-1 proved to be dispersed across multiple plasmids. Bioscience, biotechnology, and biochemistry 25 21389627
2012 Rabring7 degrades c-Myc through complex formation with MM-1. PloS one 24 22844532
1985 A lectinlike receptor on murine macrophage cell line cells, Mm1: involvement of sialic acid-binding sites in opsonin-independent phagocytosis for xenogeneic red cells. Journal of leukocyte biology 24 3855439
2005 Characterization of the differential expression of uncoupling protein 2 and ROS production in differentiated mouse macrophage-cells (Mm1) and the progenitor cells (M1). Journal of molecular histology 23 15703997
2016 An autopsied case of MM1 + MM2-cortical with thalamic-type sporadic Creutzfeldt-Jakob disease presenting with hyperintensities on diffusion-weighted MRI before clinical onset. Neuropathology : official journal of the Japanese Society of Neuropathology 22 27436355
2000 MM1, a temperate bacteriophage of the type 23F Spanish/USA multiresistant epidemic clone of Streptococcus pneumoniae: structural analysis of the site-specific integration system. Journal of virology 22 10933687
2008 Plaque-type deposition of prion protein in the damaged white matter of sporadic Creutzfeldt-Jakob disease MM1 patients. Acta neuropathologica 21 18751990
2017 Heavy metals detection using biosensor cells of a novel marine luminescent bacterium Vibrio sp. MM1 isolated from the Caspian Sea. Ecotoxicology and environmental safety 17 29127817
2016 p63α modulates c-Myc activity via direct interaction and regulation of MM1 protein stability. Oncotarget 17 27341130
1990 Monoclonal antibody inhibiting creatine kinase MM3 but not isoform MM1. Clinical chemistry 17 2297910
2003 Sporadic Creutzfeldt-Jakob disease with MM1-type prion protein and plaques. Neurology 16 12578942
2021 Circular RNA Circ_0013958 Functions as a Tumor Promoter in Ovarian Cancer by Regulating miR-637/PLXNB2 Axis. Frontiers in genetics 15 34367233
2006 Distinct localizations and repression activities of MM-1 isoforms toward c-Myc. Journal of cellular biochemistry 15 16173081
1984 Antibody-mediated enhancement of dengue virus infection in mouse macrophage cell lines, Mk1 and Mm1. Proceedings of the Society for Experimental Biology and Medicine. Society for Experimental Biology and Medicine (New York, N.Y.) 15 6364153
2008 MRI in the classical MM1 and the atypical MV2 subtypes of sporadic CJD: an inter-observer agreement study. European journal of neurology 14 18684308
1982 Biological behavior of MM1 hamster melanoma. Cancer research 13 6280853
2017 Complete genome sequence of Microbulbifer sp. CCB-MM1, a halophile isolated from Matang Mangrove Forest, Malaysia. Standards in genomic sciences 12 28694917
2022 Glial receptor PLXNB2 regulates schizophrenia-related stress perception via the amygdala. Frontiers in immunology 11 36325348
2021 Covalent Cysteine Targeting of Bruton's Tyrosine Kinase (BTK) Family by Withaferin-A Reduces Survival of Glucocorticoid-Resistant Multiple Myeloma MM1 Cells. Cancers 11 33807411
2015 Sporadic Creutzfeldt-Jakob Disease MM1+2C and MM1 are Identical in Transmission Properties. Brain pathology (Zurich, Switzerland) 11 25851836
2020 Purification and characterization of a novel fenamiphos hydrolysing enzyme from Microbacterium esteraromaticum MM1. Chemosphere 10 32229357
2025 Histone H3 lysine 18 lactylation attenuates neuroinflammation and neurological damage by regulating microglial plxnb2 after ischemic stroke. Neurobiology of disease 9 40835170
2018 Whole genome sequence and comparative analysis of Borrelia burgdorferi MM1. PloS one 9 29889842
1982 Effect of adrenal manipulation on glucocorticoid receptors in MM1 hamster melanoma. Cancer research 9 7074606
2023 Mutated axon guidance gene PLXNB2 sustains growth and invasiveness of stem cells isolated from cancers of unknown primary. EMBO molecular medicine 7 36722641
2020 Prefoldin subunit MM1 promotes cell migration via facilitating filopodia formation. Biochemical and biophysical research communications 7 32981679
2020 An enigmatic case of cortical anopsia: Antemortem diagnosis of a 14-3-3 negative Heidenhain-variant MM1-sCJD. Prion 6 31880189
2017 MM1-type sporadic Creutzfeldt-Jakob disease with 1-month total disease duration and early pathologic indicators. Neuropathology : official journal of the Japanese Society of Neuropathology 6 28402042
2024 Biallelic variants in Plexin B2 (PLXNB2) cause amelogenesis imperfecta, hearing loss and intellectual disability. Journal of medical genetics 5 38458752
2022 Population pharmacokinetic/pharmacodynamic joint modeling of ixazomib efficacy and safety using data from the pivotal phase III TOURMALINE-MM1 study in multiple myeloma patients. CPT: pharmacometrics & systems pharmacology 5 35598166
2021 Ultraviolet B irradiation up-regulates MM1 and induces photoageing of the epidermis. Photodermatology, photoimmunology & photomedicine 5 33565151
2017 New nucleoside hydrolase with transribosylation activity from Agromyces sp. MM-1 and its application for enzymatic synthesis of 2'-O-methylribonucleosides. Journal of bioscience and bioengineering 5 28826816
2014 MM1+2C sporadic Creutzfeldt-Jakob disease presenting as rapidly progressive nonfluent aphasia. Journal of Alzheimer's disease : JAD 5 24121954
2008 MM1-type sporadic Creutzfeldt-Jakob disease with unusually prolonged disease duration presenting with panencephalopathic-type pathology. Neuropathology : official journal of the Japanese Society of Neuropathology 5 18248577
1985 Specific inhibition by prostaglandin D2 and its metabolites of lysozyme synthesis in mouse macrophage-like cell line, Mm-1. Biochimica et biophysica acta 5 3855662
2025 Linvoseltamab in Patients With Relapsed/Refractory Multiple Myeloma in the LINKER-MM1 Study: Longer Follow-Up and Subgroup Analyses. Clinical lymphoma, myeloma & leukemia 4 41387038
2024 Colorectal Cancer-Associated Myofibroblasts Exhibit Enhanced Angiogenin Expression and Signaling via the PLXNB2 Receptor. The Journal of surgical research 4 38295715
2019 Autopsied case of sporadic Creutzfeldt-Jakob disease classified as MM1+2C-type. Neuropathology : official journal of the Japanese Society of Neuropathology 4 31062411
2018 An autopsied case of MM1-type sporadic Creutzfeldt-Jakob disease with pathology of Wernicke encephalopathy. Prion 4 30409087
2004 Peculiarities of the DNA of MM1, a temperate phage of Streptococcus pneumoniae. International microbiology : the official journal of the Spanish Society for Microbiology 4 15248162
2003 Molecular and biochemical analysis of the system regulating the lytic/lysogenic cycle in the pneumococcal temperate phage MM1. FEMS microbiology letters 4 12770707
2022 Genomic, transcriptomic and RNA editing analysis of human MM1 and VV2 sporadic Creutzfeldt-Jakob disease. Acta neuropathologica communications 3 36517866
2021 Metabolic strategies of dormancy of a marine bacterium Microbulbifer aggregans CCB-MM1: Its alternative electron transfer chain and sulfate-reducing pathway. Genomics 3 33689784
2013 [A case of MM1+2 Creutzfeldt-Jakob disease with a longitudinal study of EEG and MRI]. Rinsho byori. The Japanese journal of clinical pathology 3 24450104
2001 Mammary fetal gland: identification of new oncofetal antigens by monoclonal antibodies B72.3, MM1.80 and 4.36. Tumori 3 11693803
1996 Implications of automated creatine kinase (CK)-MM1,2,3/CK-MB1,2 isoform analysis as an early marker for the detection of myocardial tissue damage. Scandinavian journal of clinical and laboratory investigation 3 8981658
2021 An assimilatory sulfite reductase, CysI, negatively regulates the dormancy of Microbulbifer aggregans CCB-MM1T. Journal of basic microbiology 2 34796964
2020 Identification of intracerebral hemorrhage in the early-phase of MM1+2C-type sporadic Creutzfeldt-Jakob disease: A case report. Neuropathology : official journal of the Japanese Society of Neuropathology 2 32367540
2023 Expression analysis, clinical significance and potential function of PLXNB2 in acute myeloid leukaemia. Molecular biology reports 1 37632633
2021 System degeneration in an MM1-type sporadic Creutzfeldt-Jakob disease case with an unusually prolonged akinetic mutism state. Prion 1 33472525
2026 Kinetics of MM1.S Multiple Myeloma Cells in a 3D Polymer Particle Culture System with Bone Marrow Stromal Cells and Bortezomib. Pharmaceuticals (Basel, Switzerland) 0 41599720
2026 Virulent phages MM-1 and MM-2 attack enterohemorrhagic Escherichia coli and Salmonella enterica strains. International journal of medical microbiology : IJMM 0 41990421
2023 Evaluation of murine OX40L-murine IgG1(MM1) fusion protein on immunogenicity against L. mexicana infection in BALB/c mice. Comparative immunology, microbiology and infectious diseases 0 37393646
2022 Chronological Changes in the Expression Pattern of Hippocampal Prion Proteins During Disease Progression in Sporadic Creutzfeldt-Jakob Disease MM1 Subtype. Journal of neuropathology and experimental neurology 0 36063412
2019 [Effect of Pomalidomide on Activity of Myeloma Cell Line MM1.S and Expression of CRBN]. Zhongguo shi yan xue ye xue za zhi 0 31839058
2005 Molecular cloning, expression and chromosomal localization of mouse MM-1. Molecular biology reports 0 16328889
1990 [Serum isoforms of creatine kinase MM (MM3/MM1 ratio) in the diagnosis of acute myocardial infarction]. Zhonghua xin xue guan bing za zhi 0 2093552

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