Affinage

PLXNA3

Plexin-A3 · UniProt P51805

Length
1871 aa
Mass
207.7 kDa
Annotated
2026-06-10
100 papers in source corpus 1 papers cited in narrative 1 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PLXNA3 encodes plexin-A3, a receptor for semaphorin-3F (SEMA3F) that functions in the guidance of GnRH neurons and olfactory/vomeronasal nerve fibers during human fetal development (PMID:33495532). PLXNA3 is expressed along the olfactory nerve and the intracranial projection of the vomeronasal/terminal nerve, and together with PLXNA1 and PLXNA2 is present in early migratory GnRH neurons, positioning it within the SEMA3F signaling pathway that directs these cells (PMID:33495532). Loss-of-function missense variants in PLXNA3 cause idiopathic hypogonadotropic hypogonadism, consistent with disrupted SEMA3F-mediated guidance of GnRH neurons and olfactory/vomeronasal fibers (PMID:33495532). Beyond this receptor role and disease association, no further mechanistic detail — including downstream signaling, co-receptor requirements, or structural basis of ligand binding — has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 1 step
  1. 2021 Medium

    Established that PLXNA3 is a disease gene for idiopathic hypogonadotropic hypogonadism and placed it mechanistically in the SEMA3F guidance pathway for GnRH neurons and olfactory/vomeronasal nerve fibers.

    Evidence Exome sequencing of 216 IHH patients with cell-based functional assays of variants in HEK293T cells and fluorescent immunohistochemistry of human fetal nasal/forebrain tissue

    PMID:33495532

    Open questions at the time
    • No reconstitution of SEMA3F binding or downstream signaling by PLXNA3 reported
    • No structural data on the receptor or its variants
    • Relative contributions of PLXNA1/A2/A3 to GnRH neuron guidance not dissected

Open questions

Synthesis pass · forward-looking unresolved questions
  • How PLXNA3 transduces SEMA3F signaling at the molecular level and which co-receptors and downstream effectors mediate GnRH neuron and nerve fiber guidance remains unresolved.
  • Downstream signaling effectors unidentified
  • Co-receptor (e.g. neuropilin) requirements not tested in this corpus
  • In vivo guidance mechanism not directly demonstrated

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Partners

Evidence

Reading pass · 1 per-paper finding extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2021 Loss-of-function missense variants in PLXNA3 (encoding plexin-A3, the receptor for semaphorin-3F) were identified in patients with idiopathic hypogonadotropic hypogonadism (IHH). Functional assays in transiently transfected HEK293T cells demonstrated that the identified variants were deleterious. Fluorescent immunohistochemistry showed that PLXNA3 is expressed along the olfactory nerve and intracranial projection of the vomeronasal nerve/terminal nerve, and PLXNA1-A3 are expressed in early migratory GnRH neurons, placing PLXNA3 in the SEMA3F signaling pathway required for GnRH neuron guidance and olfactory/vomeronasal nerve fiber development. Exome sequencing of 216 IHH patients; transient transfection of HEK293T cells with WT or variant plasmids for functional assays; fluorescent immunohistochemistry on human fetal nasal region and nasal/forebrain junction tissue Genetics in medicine : official journal of the American College of Medical Genetics Medium 33495532

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2006 Sex chromosome specialization and degeneration in mammals. Cell 423 16530039
2002 Sex steroids and bone. Recent progress in hormone research 372 12017554
2007 Why humans have sex. Archives of sexual behavior 352 17610060
2012 Sex affects immunity. Journal of autoimmunity 318 22225601
2017 Sex Hormones and Sex Chromosomes Cause Sex Differences in the Development of Cardiovascular Diseases. Arteriosclerosis, thrombosis, and vascular biology 259 28279969
2002 Plant sex determination and sex chromosomes. Heredity 258 11932767
2004 Sex determination: insights from the chicken. BioEssays : news and reviews in molecular, cellular and developmental biology 250 14745830
2011 Are all sex chromosomes created equal? Trends in genetics : TIG 246 21962970
2020 Sex determination, gonadal sex differentiation, and plasticity in vertebrate species. Physiological reviews 207 33180655
2011 Sex in fungi. Annual review of genetics 205 21942368
2018 Glucocorticoids, Sex Hormones, and Immunity. Frontiers in immunology 201 29946321
2016 How to make a sex chromosome. Nature communications 198 27373494
2008 Weird animal genomes and the evolution of vertebrate sex and sex chromosomes. Annual review of genetics 193 18983263
2012 Dosage compensation of the sex chromosomes. Annual review of genetics 175 22974302
2024 Xist ribonucleoproteins promote female sex-biased autoimmunity. Cell 168 38306984
2020 The Role of Sex and Sex Hormones in Neurodegenerative Diseases. Endocrine reviews 168 31544208
2018 Sex differences in obesity, lipid metabolism, and inflammation-A role for the sex chromosomes? Molecular metabolism 166 29706320
1971 Actions of vertebrate sex hormones. Annual review of physiology 159 4157116
1995 Sex chromosome tetrasomy and pentasomy. Pediatrics 155 7567329
2024 The conneXion between sex and immune responses. Nature reviews. Immunology 152 38383754
2016 Sex Determination, Sex Chromosomes, and Karyotype Evolution in Insects. The Journal of heredity 146 27543823
2008 Sex chromosomes and sex determination in Lepidoptera. Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation 145 18391545
2018 Sex differences in psychiatric disorders: what we can learn from sex chromosome aneuploidies. Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 126 30127341
2008 Sex determination in amphibians. Seminars in cell & developmental biology 108 18996493
2006 Somatic sex determination. WormBook : the online review of C. elegans biology 108 18050479
2018 Transitions in sex determination and sex chromosomes across vertebrate species. Molecular ecology 106 29451715
2002 Origins of the machinery of recombination and sex. Heredity 106 11932771
2018 Why Do Sex Chromosomes Stop Recombining? Trends in genetics : TIG 104 29716744
2002 Sex comes in from the cold: the integration of sex and pattern. Trends in genetics : TIG 101 12350340
1998 Sex in the 90s: SRY and the switch to the male pathway. Annual review of physiology 101 9558474
2010 Evolution of sex chromosomes in insects. Annual review of genetics 100 21047257
2017 Fungal Sex: The Basidiomycota. Microbiology spectrum 99 28597825
2019 Sex bias in autoimmunity. Current opinion in rheumatology 96 30394940
2001 Minireview: sex differentiation. Endocrinology 95 11459768
2005 Insulin resistance: sex matters. Current opinion in clinical nutrition and metabolic care 92 15930959
2012 Sex and life expectancy. Gender medicine 85 23164528
2001 Sex from W to Z: evolution of vertebrate sex chromosomes and sex determining genes. The Journal of experimental zoology 83 11555852
2016 Sex hormones and acne. Clinics in dermatology 76 28274349
2022 Sex determination mechanisms and sex control approaches in aquaculture animals. Science China. Life sciences 75 35583710
2016 Why we should consider sex (and study sex differences) in addiction research. Addiction biology 75 27029841
2017 Stress and sex: does cortisol mediate sex change in fish? Reproduction (Cambridge, England) 74 28890443
2013 Sex and sex hormones in cardiac stress--mechanistic insights. The Journal of steroid biochemistry and molecular biology 73 23770428
2011 Sex matters: evaluating sex and gender in migraine and headache research. Headache 73 21631471
2022 The Hepatoprotective and Hepatotoxic Roles of Sex and Sex-Related Hormones. Frontiers in immunology 70 35860276
1996 Sex chromatin in lepidoptera. The Quarterly review of biology 68 8693060
2020 Sex Chromosome Degeneration by Regulatory Evolution. Current biology : CB 63 32559446
2008 Endothelin, sex and hypertension. Clinical science (London, England : 1979) 63 18062774
2014 Sex chromosome drive. Cold Spring Harbor perspectives in biology 61 25524548
2008 Sex hormones and urticaria. Journal of dermatological science 60 18485675
2007 Sex-linked deafness. Clinical genetics 60 18005182
2019 Deconstructing the sex bias in allergy and autoimmunity: From sex hormones and beyond. Advances in immunology 59 31296302
2018 Sex chromosome contributions to sex differences in multiple sclerosis susceptibility and progression. Multiple sclerosis (Houndmills, Basingstoke, England) 57 29307297
2006 Sex determination in papaya. Seminars in cell & developmental biology 57 17353137
2018 Sex chromosome aneuploidies. Handbook of clinical neurology 56 29325624
2018 Sex determination and gonadal sex differentiation in the chicken model. The International journal of developmental biology 53 29616724
2022 Multilayered omics reveal sex- and depot-dependent adipose progenitor cell heterogeneity. Cell metabolism 50 35447091
1985 Schizophrenia: sex differences. Canadian journal of psychiatry. Revue canadienne de psychiatrie 50 3896453
2021 Autosomal sex-associated co-methylated regions predict biological sex from DNA methylation. Nucleic acids research 45 34403484
2009 The sex determining loci and sex chromosomes in the family salmonidae. Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation 45 19684453
2001 Sex related embryo development. Theriogenology 45 11198086
2001 Sex chromosomes, sex-linked genes, and sex determination in the vertebrate class amphibia. EXS 45 11301597
2017 Sex steroids and neurogenesis. Biochemical pharmacology 44 28571999
2021 When and how do sex-linked regions become sex chromosomes? Evolution; international journal of organic evolution 43 33592115
2010 Review: Sex chromosome evolution and the expression of sex-specific genes in the placenta. Placenta 43 20163856
2007 Determination and stability of sex. BioEssays : news and reviews in molecular, cellular and developmental biology 43 17187356
2012 The molecular genetics of sex determination and sex reversal in mammals. Seminars in reproductive medicine 42 23044871
2009 Sex determination diversity and sex chromosome evolution in poeciliid fish. Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation 42 19684452
2007 Ellobius lutescens: sex determination and sex chromosome. Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation 42 18391532
1994 Sex determination. Human molecular genetics 42 7849739
2024 Sex differences in disease: sex chromosome and immunity. Journal of translational medicine 41 39731171
2014 Sex chromosome polymorphism in guppies. Chromosoma 41 24676866
2007 Genomics of sex chromosomes. Current opinion in plant biology 41 17300986
1992 Sex determination and sex reversal: genotype, phenotype, dogma and semantics. Human genetics 41 1634224
2018 How oxygen gave rise to eukaryotic sex. Proceedings. Biological sciences 40 29436502
2014 Avian sex, sex chromosomes, and dosage compensation in the age of genomics. Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 40 24599719
2006 The right dose for every sex. Chromosoma 40 17124606
2014 Yes! Sex matters: sex, the brain and blood pressure. Current hypertension reports 39 24929952
2009 Sex determination and sex chromosome evolution: insights from medaka. Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation 39 19684454
2008 WNT4 and sex development. Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation 39 18987495
2003 CNS: sex steroids and SERMs. Annals of the New York Academy of Sciences 39 14644845
2002 Tying rings for sex. Trends in microbiology 39 12160637
2015 Human sex-determination and disorders of sex-development (DSD). Seminars in cell & developmental biology 38 26526145
2005 Sex chromosomes and sex determination in reptiles. Current opinion in genetics & development 38 16214335
2002 Sex and the single chromosome. Advances in genetics 37 11931222
2021 Sex determination without sex chromosomes. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 36 34247500
2016 Sex Reversal in Birds. Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation 35 27529790
2001 46,XX sex reversal. Archives of medical research 34 11750731
2021 Sex-chromosome evolution in frogs: what role for sex-antagonistic genes? Philosophical transactions of the Royal Society of London. Series B, Biological sciences 33 34247502
2020 Obesity: sex and sympathetics. Biology of sex differences 32 32160920
2020 Default Sex and Single Gene Sex Determination in Dioecious Plants. Frontiers in plant science 32 32849717
2018 Sex Hormones Regulate SHANK Expression. Frontiers in molecular neuroscience 32 30319350
2020 Stress, Sex, and Sugar: Glucocorticoids and Sex-Steroid Crosstalk in the Sex-Specific Misprogramming of Metabolism. Journal of the Endocrine Society 31 32734132
2007 Sex determination in birds: HINTs from the W sex chromosome? Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation 31 18391538
2024 Sex and sex steroids as determinants of cardiovascular risk. Steroids 29 38631602
2001 Sex and U. Trends in genetics : TIG 27 11173114
2020 Evolution of Sex Determination and Sex Chromosomes: A Novel Alternative Paradigm. BioEssays : news and reviews in molecular, cellular and developmental biology 26 32648258
2021 Loss-of-function variants in SEMA3F and PLXNA3 encoding semaphorin-3F and its receptor plexin-A3 respectively cause idiopathic hypogonadotropic hypogonadism. Genetics in medicine : official journal of the American College of Medical Genetics 24 33495532
2007 Age-specific changes in sex steroid biosynthesis and sex development. Best practice & research. Clinical endocrinology & metabolism 24 17875487
2004 ATRX and sex differentiation. Trends in endocrinology and metabolism: TEM 24 15350606
1999 Sex chromosomes and sex-determining genes: insights from marsupials and monotremes. Cellular and molecular life sciences : CMLS 23 10412369

Missed literature

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