Affinage

PLCXD2

PI-PLC X domain-containing protein 2 · UniProt Q0VAA5

Round 2 corrected
Length
305 aa
Mass
34.8 kDa
Annotated
2026-04-28
13 papers in source corpus 2 papers cited in narrative 4 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PLCXD2 is a constitutively active phospholipase C family member that functions as a postsynaptic effector controlling spine apparatus abundance and dendritic spine maturation in cortical neurons. PLCXD2 forms a signaling complex with the GPCR-like receptor GPR158, which directly restrains PLCXD2 enzymatic activity; loss of GPR158 leads to unrestrained PLCXD2 activity, impeding spine apparatus incorporation into dendritic spines and disrupting both structural and functional spine maturation (PMID:40393451). Extracellular heparan sulfate proteoglycans modulate the GPR158–PLCXD2 interaction, providing spatiotemporal control that bypasses canonical G-protein-mediated PLC regulation (PMID:40393451). In gastric cancer cells, PLCXD2 protein levels are post-transcriptionally suppressed by miR-378a-3p within the ACTA2-AS1 ceRNA axis, and PLCXD2 expression suppresses malignant phenotypes including proliferation, migration, and epithelial-mesenchymal transition (PMID:35274046).

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 2022 Medium

    Identification of PLCXD2 as a functionally relevant target downstream of a non-coding RNA regulatory axis in cancer cells established that PLCXD2 protein levels are post-transcriptionally controlled by miR-378a-3p and that PLCXD2 expression suppresses proliferative and invasive phenotypes in gastric cancer.

    Evidence Luciferase reporter assays, RNA immunoprecipitation, siRNA knockdown with proliferation/migration/invasion readouts in gastric cancer cell lines

    PMID:35274046

    Open questions at the time
    • No direct measurement of PLCXD2 phospholipase activity in cancer cells
    • Single-lab study without independent replication
    • Whether the tumor-suppressive role depends on catalytic activity versus scaffolding is unknown
  2. 2025 High

    Discovery that PLCXD2 is a constitutively active PLC restrained by GPR158 in a postsynaptic complex resolved how neurons control PLCXD2 enzymatic output and linked its unrestrained activity to defective spine apparatus dynamics and impaired dendritic spine maturation.

    Evidence In vivo sparse genetic loss-of-function in mouse cortical neurons, co-immunoprecipitation of GPR158–PLCXD2 complex, spine apparatus imaging and functional spine maturation readouts

    PMID:40393451

    Open questions at the time
    • The lipid substrate specificity and catalytic products of PLCXD2 have not been biochemically defined
    • No structural model of the GPR158–PLCXD2 complex exists
    • Whether PLCXD2 functions in non-neuronal postmitotic cells through a similar GPR158-dependent mechanism is unknown
  3. 2025 Medium

    The finding that extracellular HSPGs modulate the GPR158–PLCXD2 interaction revealed a non-canonical GPCR-to-PLC signaling pathway that bypasses classical G-protein intermediates, suggesting spatiotemporal regulation of PLCXD2 by the extracellular matrix.

    Evidence Biochemical binding assays and in vivo functional assays examining HSPG modulation of GPR158–PLCXD2 interaction in mouse cortical neurons

    PMID:40393451

    Open questions at the time
    • The specific HSPG species and binding domains involved are not defined
    • Quantitative biochemistry of HSPG-dependent inhibition kinetics is lacking
    • Whether HSPG modulation is activity-dependent or developmentally programmed is unresolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • The substrate specificity, catalytic mechanism, and lipid products of PLCXD2 remain undefined, and the structural basis for GPR158-mediated inhibition of its constitutive activity has not been determined.
  • No in vitro enzymatic reconstitution with defined substrates has been reported
  • No crystal or cryo-EM structure of PLCXD2 alone or in complex with GPR158 exists
  • Downstream signaling consequences of PLCXD2 catalytic products at synapses are unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016787 hydrolase activity 2
Localization
GO:0005886 plasma membrane 2
Pathway
R-HSA-112316 Neuronal System 2 R-HSA-162582 Signal Transduction 2
Partners

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2025 PLCXD2 is a constitutively active phospholipase C (PLC) family member that forms a postsynaptic signaling complex with the GPCR-like receptor GPR158. In mouse cortical neurons in vivo, absence of GPR158 results in unrestrained PLCXD2 activity that impedes spine apparatus (SA) incorporation into dendritic spines and hampers structural and functional dendritic spine maturation, establishing PLCXD2 as a downstream effector whose activity must be restrained by GPR158 for proper postsynaptic development. Sparse in vivo genetic manipulations (loss-of-function) in mouse cortical neurons, co-immunoprecipitation of GPR158-PLCXD2 complex, structural/functional spine maturation readouts Developmental cell High 40393451
2025 Extracellular heparan sulfate proteoglycan (HSPG) binding modulates the GPR158-PLCXD2 interaction, providing spatiotemporal control over GPR158-mediated inhibition of PLCXD2 activity at synapses. This reveals a direct GPCR-like receptor-to-PLC signaling pathway that bypasses canonical PLC regulation via G proteins. Biochemical binding assays and in vivo functional assays examining HSPG modulation of GPR158-PLCXD2 interaction Developmental cell Medium 40393451
2025 The GPR158-PLCXD2 signaling module regulates spine apparatus abundance, which is required for proper postsynaptic structure and function, linking PLCXD2 phospholipase activity to endoplasmic reticulum-related organelle (spine apparatus) dynamics in dendritic spines. In vivo sparse genetic manipulation, live imaging of spine apparatus, functional spine maturation assays in mouse cortical neurons Developmental cell High 40393451
2022 PLCXD2 expression in gastric cancer cells is suppressed by miR-378a-3p, which directly targets PLCXD2 mRNA. Knockdown of PLCXD2 rescued the inhibitory effect of lncRNA ACTA2-AS1 overexpression on malignant behaviors (proliferation, migration, invasion, EMT), indicating PLCXD2 acts downstream of the ACTA2-AS1/miR-378a-3p ceRNA axis to suppress malignant phenotypes. RNA pulldown assays, luciferase reporter assays, RNA immunoprecipitation assays, siRNA knockdown with cellular phenotype readouts (CCK-8, colony formation, wound healing, Transwell, Western blot) Open medicine (Warsaw, Poland) Medium 35274046

Source papers

Stage 0 corpus · 13 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2003 Complete sequencing and characterization of 21,243 full-length human cDNAs. Nature genetics 754 14702039
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2010 Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. Molecular medicine (Cambridge, Mass.) 108 20379614
2013 CBFβ stabilizes HIV Vif to counteract APOBEC3 at the expense of RUNX1 target gene expression. Molecular cell 102 23333304
2010 Common genetic variation and performance on standardized cognitive tests. European journal of human genetics : EJHG 78 20125193
2020 Suppression of DDX39B sensitizes ovarian cancer cells to DNA-damaging chemotherapeutic agents via destabilizing BRCA1 mRNA. Oncogene 38 32989256
2010 An approach based on a genome-wide association study reveals candidate loci for narcolepsy. Human genetics 32 20677014
2020 AMPK Interactome Reveals New Function in Non-homologous End Joining DNA Repair. Molecular & cellular proteomics : MCP 15 31900314
2022 lncRNA ACTA2-AS1 inhibits malignant phenotypes of gastric cancer cells. Open medicine (Warsaw, Poland) 8 35274046
2025 A postsynaptic GPR158-PLCXD2 complex controls spine apparatus abundance and dendritic spine maturation. Developmental cell 3 40393451