Affinage

PLCL2

Inactive phospholipase C-like protein 2 · UniProt Q9UPR0

Length
1127 aa
Mass
125.9 kDa
Annotated
2026-04-28
28 papers in source corpus 6 papers cited in narrative 6 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PLCL2 is a catalytically inactive phospholipase C-like protein that functions as a signaling modulator in immune, endocrine, and metabolic contexts. Its PH domain binds PI(4,5)P2 and Ins(1,4,5)P3 and targets the protein to perinuclear/endoplasmic reticulum membranes, but substitution of two essential catalytic residues (His→Thr, Tyr→Phe) abolishes PLC enzymatic activity (PMID:10581172). In B lymphocytes, PLCL2 negatively regulates BCR signaling by suppressing calcium influx, NFATc nuclear accumulation, and ERK activation, thereby restraining mature B cell proliferation and T-cell-independent antigen responses (PMID:14517301). In the uterus, PLCL2 is a transcriptional target of progesterone receptor isoform B—driven via a PGR-occupied upstream enhancer—and attenuates myometrial contractility through the Oxtr–PLCL2–Trpc3 axis, while in adipocytes it interacts with the insulin receptor to maintain its surface retention and support downstream Akt signaling (PMID:33707208, PMID:40493036, PMID:34859819).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 1999 High

    Establishing that PLCL2 is a PLC-family member that retains phosphoinositide binding but lacks catalytic activity resolved the question of whether all PLC-like proteins are enzymes, and identified PI(4,5)P2/IP3 binding and perinuclear/ER localization as defining features.

    Evidence Site-directed mutagenesis of catalytic residues, lipid-binding assays, and GFP-fusion localization in C2C12 and COS7 cells

    PMID:10581172

    Open questions at the time
    • No physiological function or signaling pathway had yet been assigned
    • Mechanism by which PI(4,5)P2 binding without catalysis affects signaling was unknown
  2. 2003 High

    Genetic deletion of PLCL2 in mice revealed it as a negative regulator of BCR signaling—suppressing Ca²⁺ flux, NFATc activation, and ERK activity—thereby defining its first physiological role as a brake on B cell activation.

    Evidence PLCL2 knockout mouse with calcium flux, NFATc localization, ERK activity, proliferation, and antigen response assays

    PMID:14517301

    Open questions at the time
    • Molecular mechanism by which catalytically dead PLCL2 dampens Ca²⁺ signaling (e.g., PI(4,5)P2 sequestration vs. adaptor function) was not resolved
    • Whether PLCL2 acts cell-autonomously in B cells was not formally shown
  3. 2009 Medium

    PLCL1/PLCL2 double-knockout mice exhibited elevated gonadotropin secretion and impaired female reproduction, extending the functional scope of PLCL2 to neuroendocrine regulation, though individual contributions of the two paralogs remained unresolved.

    Evidence PLCL1/PLCL2 double-knockout mice; serum LH/FSH measurements; pituitary explant cultures; estrous cycle monitoring

    PMID:19553601

    Open questions at the time
    • PLCL2-specific contribution was not genetically separated from PLCL1
    • Molecular targets of PLCL2 in pituitary gonadotrophs were not identified
  4. 2021 High

    Identification of PLCL2 as a downstream effector of progesterone receptor isoform B in the uterus established a new tissue context and placed PLCL2 within the Oxtr–PLCL2–Trpc3 pathway controlling myometrial contractility.

    Evidence Transgenic PGR-A/PGR-B mouse models; uterine RNA-seq; ex vivo and in vivo contractility assays; CRISPRa gain-of-function

    PMID:33707208

    Open questions at the time
    • Direct biochemical interaction between PLCL2 and Oxtr or Trpc3 was not demonstrated
    • Whether PLCL2 acts by sequestering phosphoinositides or via protein–protein interactions in myometrium was unclear
  5. 2022 Medium

    Demonstration that PLCL2 (together with PLCL1) interacts with the insulin receptor and promotes its surface retention and downstream Akt signaling in adipocytes revealed a metabolic function involving receptor trafficking regulation.

    Evidence PLCL1/PLCL2 double-knockout mouse adipocytes; co-immunoprecipitation with IR; glucose uptake assay; Rab5 siRNA rescue of surface IR

    PMID:34859819

    Open questions at the time
    • PLCL2-specific contribution was not genetically separated from PLCL1
    • Whether PLCL2 binds the IR directly or through an adaptor complex is unresolved
    • Structural basis of PLCL2–IR interaction is unknown
  6. 2025 Medium

    Identification of a PGR-occupied enhancer 35 kb upstream of PLCL2 that drives its transcription in myometrial cells provided the cis-regulatory mechanism linking progesterone signaling to PLCL2 expression.

    Evidence H3K27ac/H3K4me1 ChIP-seq, chromatin conformation capture, PGR overexpression, CRISPRa activation of enhancer in human myometrial cells

    PMID:40493036

    Open questions at the time
    • Whether this enhancer operates in other PGR-expressing tissues is unknown
    • In vivo validation of enhancer necessity (e.g., enhancer deletion mouse) is lacking

Open questions

Synthesis pass · forward-looking unresolved questions
  • The unifying molecular mechanism by which a catalytically dead PLC-like protein modulates diverse signaling pathways—whether through phosphoinositide sequestration, scaffolding, or competition with active PLCs—remains unresolved.
  • No structural model of full-length PLCL2 exists
  • Relative importance of PI(4,5)P2 binding versus protein–protein interactions for each tissue function is unknown
  • PLCL2-specific versus PLCL1-redundant functions have not been genetically separated in endocrine and metabolic tissues

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 2 GO:0008289 lipid binding 1
Localization
GO:0005783 endoplasmic reticulum 1
Pathway
R-HSA-162582 Signal Transduction 3 R-HSA-1474165 Reproduction 2 R-HSA-168256 Immune System 1
Partners

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1999 PLCL2 (PLC-L2) was identified as a novel PLC-like protein that lacks PLC catalytic activity due to replacement of two essential residues (His356→Thr and Tyr552→Phe in the X and Y domains). Its PH domain binds strongly to PI(4,5)P2 and Ins(1,4,5)P3, and moderately to PI(4)P and PI(3,4,5)P3. PLCL2 localizes predominantly to perinuclear areas including the endoplasmic reticulum in myoblast, myotube, and COS7 cells, with the PH domain sufficient for this localization. Site-directed mutagenesis analysis of catalytic residues; lipid-binding assays; GFP-fusion localization in C2C12 and COS7 cells; subcellular fractionation Biochemical and biophysical research communications High 10581172
2003 PLCL2 functions as a negative regulator of B-cell receptor (BCR) signaling. Genetic knockout of PLCL2 in mice causes hyperproliferation of mature B cells in response to BCR cross-linking, enhanced calcium influx, increased NFATc nuclear accumulation, elevated ERK activity, and a stronger T-cell-independent antigen response, without affecting B2 cell development. PLCL2 knockout mouse model; B cell proliferation assays; calcium flux measurements; NFATc nuclear localization assays; ERK kinase activity assays; antigen response assays Molecular and cellular biology High 14517301
2009 PLCL2 (PRIP-2) and its paralog PLCL1 (PRIP-1) together regulate gonadotropin secretion in females. Double-knockout mice show elevated serum LH and FSH levels and increased LH secretion from explanted anterior pituitary glands, resulting in impaired female reproductive function (smaller uterus, altered estrous cycles, reduced litter size). PLCL1/PLCL2 double-knockout mouse model; serum hormone measurements; explant culture of anterior pituitary glands; estrous cycle monitoring Biology of reproduction Medium 19553601
2021 Progesterone receptor isoform B (PGR-B) suppresses uterine contractility through a pathway that increases PLCL2 expression while reducing Oxtr and Trpc3 expression. Both PLCL2 and its paralog PLCL1 can attenuate uterine smooth muscle cell contraction when activated by CRISPRa, defining PLCL2 as a downstream effector of PGR-B-mediated myometrial relaxation. Transgenic mouse models overexpressing PGR-A or PGR-B; uterine RNA sequencing; ex vivo and in vivo contractility assays; CRISPRa-based gain-of-function in uterine cells Proceedings of the National Academy of Sciences of the United States of America High 33707208
2022 PLCL2 (PRIP-2) acts as a positive regulator of insulin signaling in adipocytes by interacting with the insulin receptor (IR) and modulating IR internalization. In PLCL2/PLCL1 double-knockout adipocytes, insulin-stimulated phosphorylation of IR, IRS-1, and Akt is impaired, glucose uptake is reduced, and cell-surface IR is decreased. Co-immunoprecipitation showed PRIP interacts with IR. Rab5 silencing rescued surface IR levels in KO cells; dephosphorylation of inhibitory serine residues on IRS-1 was impaired in KO cells. PRIP double-knockout mouse adipocytes; immunoprecipitation; glucose uptake assay; Western blot for insulin signaling; siRNA knockdown of Rab5; surface IR quantification Journal of cell science Medium 34859819
2025 Progesterone receptor (PGR) acts through a putative enhancer located 35 kb upstream of the PLCL2 gene to promote PLCL2 expression in human myometrial cells. PGR occupancy at this locus correlates with PLCL2 mRNA levels, and PGR overexpression increases PLCL2 expression; CRISPRa activation of this enhancer upregulates PLCL2. H3K27ac/H3K4me1 ChIP-seq (cistrome mapping); chromatin conformation capture; PGR overexpression in myometrial cells; CRISPRa targeting of upstream enhancer; RT-qPCR eLife Medium 40493036

Source papers

Stage 0 corpus · 28 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2013 Phosphoproteomics of collagen receptor networks reveals SHP-2 phosphorylation downstream of wild-type DDR2 and its lung cancer mutants. The Biochemical journal 64 23822953
1999 Identification and characterization of a new phospholipase C-like protein, PLC-L(2). Biochemical and biophysical research communications 46 10581172
2014 A genome-wide association study identifies PLCL2 and AP3D1-DOT1L-SF3A2 as new susceptibility loci for myocardial infarction in Japanese. European journal of human genetics : EJHG 43 24916648
2015 Identification of NF-κB and PLCL2 as new susceptibility genes and highlights on a potential role of IRF8 through interferon signature modulation in systemic sclerosis. Arthritis research & therapy 41 25880423
2003 Role of phospholipase C-L2, a novel phospholipase C-like protein that lacks lipase activity, in B-cell receptor signaling. Molecular and cellular biology 39 14517301
2012 Comprehensive assessment of rheumatoid arthritis susceptibility loci in a large psoriatic arthritis cohort. Annals of the rheumatic diseases 37 22328738
2014 Epigenetic alterations of chromosome 3 revealed by NotI-microarrays in clear cell renal cell carcinoma. BioMed research international 34 24977159
2009 Involvement of phospholipase C-related inactive protein in the mouse reproductive system through the regulation of gonadotropin levels. Biology of reproduction 34 19553601
2021 Progesterone receptor isoform B regulates the Oxtr-Plcl2-Trpc3 pathway to suppress uterine contractility. Proceedings of the National Academy of Sciences of the United States of America 28 33707208
2020 A Genome-Wide Association Study on Feed Efficiency Related Traits in Landrace Pigs. Frontiers in genetics 24 32719719
2016 Investigation of the genetic overlap between rheumatoid arthritis and psoriatic arthritis in a Greek population. Scandinavian journal of rheumatology 17 27440135
2023 Genome-wide identification of RNA modification-related single nucleotide polymorphisms associated with rheumatoid arthritis. BMC genomics 16 36973646
2020 Multi-Ancestry Genome-wide Association Study Accounting for Gene-Psychosocial Factor Interactions Identifies Novel Loci for Blood Pressure Traits. HGG advances 12 34734193
2021 hsa_circ_0001275 Is One of a Number of circRNAs Dysregulated in Enzalutamide Resistant Prostate Cancer and Confers Enzalutamide Resistance In Vitro. Cancers 11 34945002
2023 Exome-wide analysis identify multiple variations in olfactory receptor genes (OR12D2 and OR5V1) associated with autism spectrum disorder in Saudi females. Frontiers in medicine 6 36817779
2022 Genome-wide association study of SARS-CoV-2 infection in Chinese population. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 5 35927536
2020 Two Novel SNPs in the PLCL2 Gene Associated with Large Artery Atherosclerotic Stroke Identified by Fine-Mapping. Journal of molecular neuroscience : MN 5 31970634
2023 [High expression of Circ-PALLD in heart failure is transcriptionally regulated by the transcription factor GATA4]. Nan fang yi ke da xue xue bao = Journal of Southern Medical University 3 37712274
2022 Fine-Mapping of the PLCL2 Gene Identifies Candidate Variants Associated With Ischaemic Stroke Risk in Metabolic Syndrome Patients. Frontiers in neurology 3 35126281
2020 [Functional Hypermethylation of ALDH1L1, PLCL2, and PPP2R3A in Colon Cancer]. Molekuliarnaia biologiia 3 32392189
2020 Association of rs4618210A>G variant in PLCL2 gene with myocardial infarction: A case-control study in Iran. Journal of cardiovascular and thoracic research 3 33510879
2025 Assessment of the Histone Mark-based Epigenomic Landscape in Human Myometrium at Term Pregnancy. bioRxiv : the preprint server for biology 2 40060655
2023 A novel fatty-acid metabolism-based classification for triple negative breast cancer. Aging 2 36880837
2025 Assessment of the histone mark-based epigenomic landscape in human myometrium at term pregnancy. eLife 1 40493036
2022 Phospholipase C-related but catalytically inactive protein acts as a positive regulator of insulin signalling in adipocytes. Journal of cell science 1 34859819
2026 Overlapping genetic etiology of pediatric and adult germ cell tumors. Journal of the National Cancer Institute 0 41941753
2025 Genetic markers for knee osteoarthritis presence are not associated with disease progression - data from the IMI-APPROACH cohort. PloS one 0 40554537
2024 Variants in 3p24.3 predicts the risk of early neurological deterioration in large artery atherosclerotic stroke. Brain research 0 38499234